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Conserved domains on  [gi|2431621462|gb|WCC54149|]
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NADH-quinone oxidoreductase subunit NuoF [Xanthomonas perforans]

Protein Classification

NADH oxidoreductase (quinone) subunit F( domain architecture ID 11493352)

NADH oxidoreductase (quinone) subunit F (NuoF) is part of the dehydrogenase domain of the complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
nuoF_fam TIGR01959
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ...
 20-429 0e+00

NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]


:

Pssm-ID: 131014  Cd Length: 411  Bit Score: 744.15  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  20 VVYTTLHYDTPWSYESYLKTGGYAALRKILEEkIPPADVIEMVKASNLRGRGGAGFPTGLKWSFMPKG--TMQKYILCNS 97
Cdd:TIGR01959   1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEE-MSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDdsPKPKYLVCNA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  98 DESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYLRGEFHHEpFENFELALADAYANGWLGKNILGSGVDIDIY 177
Cdd:TIGR01959  80 DESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKE-AENLEAAIAEAYAAGLLGKNILGSGFDFELF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 178 GALGAGAYICGEETALMESLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIF 257
Cdd:TIGR01959 159 VHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLF 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 258 SVSGCVQKGGNFEVPLGTTFDELLE-MAGGLRPGRKLKGVVPGGVSMPVLKADQVAGLQMDYDTLRALGTGLGSGAIVVL 336
Cdd:TIGR01959 239 SVSGHVNKPGNYELPLGTPLRELLEdYAGGMRGGWKLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVM 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 337 DDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQG 416
Cdd:TIGR01959 319 DESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQS 398

                         410
                  ....*....|...
gi 2431621462 417 FLRQFWDEFEYYI 429
Cdd:TIGR01959 399 AIKHFRDEFEAHI 411
 
Name Accession Description Interval E-value
nuoF_fam TIGR01959
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ...
 20-429 0e+00

NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 131014  Cd Length: 411  Bit Score: 744.15  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  20 VVYTTLHYDTPWSYESYLKTGGYAALRKILEEkIPPADVIEMVKASNLRGRGGAGFPTGLKWSFMPKG--TMQKYILCNS 97
Cdd:TIGR01959   1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEE-MSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDdsPKPKYLVCNA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  98 DESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYLRGEFHHEpFENFELALADAYANGWLGKNILGSGVDIDIY 177
Cdd:TIGR01959  80 DESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKE-AENLEAAIAEAYAAGLLGKNILGSGFDFELF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 178 GALGAGAYICGEETALMESLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIF 257
Cdd:TIGR01959 159 VHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLF 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 258 SVSGCVQKGGNFEVPLGTTFDELLE-MAGGLRPGRKLKGVVPGGVSMPVLKADQVAGLQMDYDTLRALGTGLGSGAIVVL 336
Cdd:TIGR01959 239 SVSGHVNKPGNYELPLGTPLRELLEdYAGGMRGGWKLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVM 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 337 DDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQG 416
Cdd:TIGR01959 319 DESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQS 398

                         410
                  ....*....|...
gi 2431621462 417 FLRQFWDEFEYYI 429
Cdd:TIGR01959 399 AIKHFRDEFEAHI 411
NuoF COG1894
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ...
 18-433 0e+00

NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 441498 [Multi-domain]  Cd Length: 418  Bit Score: 718.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  18 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKiPPADVIEMVKASNLRGRGGAGFPTGLKWSFMPKGT-MQKYILCN 96
Cdd:COG1894     4 TRVLLRNCGIIDPESLEDYIARGGYQALRKALTEM-TPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPgDPKYLVCN 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  97 SDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYLRGEFHHEpFENFELALADAYANGWLGKNILGSGVDIDI 176
Cdd:COG1894    83 ADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLA-IERLEKAIEEAREAGLLGKNILGSGFDFDI 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 177 YGALGAGAYICGEETALMESLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKI 256
Cdd:COG1894   162 EVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 257 FSVSGCVQKGGNFEVPLGTTFDELL-EMAGGLRPGRKLKGVVPGGVSMPVLKADQvAGLQMDYDTLRALGTGLGSGAIVV 335
Cdd:COG1894   242 FSLSGHVKNPGLYEVPMGTTLRELIyDIGGGIRGGRKLKAVQPGGPSGGCLPAEH-LDTPMDYESLAAAGSMLGSGGMIV 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 336 LDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQ 415
Cdd:COG1894   321 MDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPNPVL 400

                         410
                  ....*....|....*...
gi 2431621462 416 GFLRQFWDEFEYYIVNGR 433
Cdd:COG1894   401 STLKYFRDEFEAHIKDKR 418
PRK13596 PRK13596
NADH-quinone oxidoreductase subunit NuoF;
21-444 0e+00

NADH-quinone oxidoreductase subunit NuoF;


Pssm-ID: 237441  Cd Length: 433  Bit Score: 548.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  21 VYTTLHYDTPWSYESYLKTGGYAALRKILE---EKIppadvIEMVKASNLRGRGGAGFPTGLKWSFMPKGTMQK--YILC 95
Cdd:PRK13596    8 IFTNLYGLQDWSLKGAKKRGDWDGTKAILDkgrDWI-----IEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRphYLVV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  96 NSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYLRGEFHHEpFENFELALADAYANGWLGKNILGSGVDID 175
Cdd:PRK13596   83 NADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIRE-REALQAAIDEAYEAGLIGKNACGSGWDFD 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 176 IYGALGAGAYICGEETALMESLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255
Cdd:PRK13596  162 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 256 IFSVSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQMDYDTLRALGTGLGSGAI 333
Cdd:PRK13596  242 LFCISGHVNKPCNVEEAMGIPFRELIEKhAGGVRGGwDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAV 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 334 VVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWP 413
Cdd:PRK13596  322 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 401

                         410       420       430
                  ....*....|....*....|....*....|.
gi 2431621462 414 IQGFLRQFWDEFEYYIVNGRSIVDTQVGVAA 444
Cdd:PRK13596  402 IQGLIRHFRPEIEERIDQYTANAHSDPLEAA 432
Complex1_51K pfam01512
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
62-233 1.33e-54

Respiratory-chain NADH dehydrogenase 51 Kd subunit;


Pssm-ID: 460237 [Multi-domain]  Cd Length: 150  Bit Score: 178.48  E-value: 1.33e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  62 VKASNLRGRGGAGFPTGLKWSFMPKGTMqKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYLRGE 141
Cdd:pfam01512   1 VKEAGIVGRGGAGFPTHVKLSPPPKKKI-KYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIRDE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 142 fHHEPFENFELALADAYAngwlgknilgSGVDIDIygALGAGAYICGEETALMESLEGkKGQPRYKPpfPANFGLygkpt 221
Cdd:pfam01512  80 -KPEAIAALEKAIAEARA----------AGFDIEV--HRGAGAYPCGEEKALIYSLTG-RGVPRGKP--PADVGV----- 138

                         170
                  ....*....|..
gi 2431621462 222 TINNTETYASVP 233
Cdd:pfam01512 139 VVNNVETLAAVP 150
NADH_4Fe-4S smart00928
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
343-388 2.08e-22

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;


Pssm-ID: 197996 [Multi-domain]  Cd Length: 46  Bit Score: 89.51  E-value: 2.08e-22
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2431621462  343 VRFACRISQFFHKESCGQCTPCREGTGWMHRVLERIVAGKATMEDL 388
Cdd:smart00928   1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
 
Name Accession Description Interval E-value
nuoF_fam TIGR01959
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ...
 20-429 0e+00

NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 131014  Cd Length: 411  Bit Score: 744.15  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  20 VVYTTLHYDTPWSYESYLKTGGYAALRKILEEkIPPADVIEMVKASNLRGRGGAGFPTGLKWSFMPKG--TMQKYILCNS 97
Cdd:TIGR01959   1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEE-MSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDdsPKPKYLVCNA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  98 DESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYLRGEFHHEpFENFELALADAYANGWLGKNILGSGVDIDIY 177
Cdd:TIGR01959  80 DESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKE-AENLEAAIAEAYAAGLLGKNILGSGFDFELF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 178 GALGAGAYICGEETALMESLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIF 257
Cdd:TIGR01959 159 VHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLF 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 258 SVSGCVQKGGNFEVPLGTTFDELLE-MAGGLRPGRKLKGVVPGGVSMPVLKADQVAGLQMDYDTLRALGTGLGSGAIVVL 336
Cdd:TIGR01959 239 SVSGHVNKPGNYELPLGTPLRELLEdYAGGMRGGWKLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVM 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 337 DDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQG 416
Cdd:TIGR01959 319 DESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQS 398

                         410
                  ....*....|...
gi 2431621462 417 FLRQFWDEFEYYI 429
Cdd:TIGR01959 399 AIKHFRDEFEAHI 411
NuoF COG1894
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ...
 18-433 0e+00

NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 441498 [Multi-domain]  Cd Length: 418  Bit Score: 718.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  18 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKiPPADVIEMVKASNLRGRGGAGFPTGLKWSFMPKGT-MQKYILCN 96
Cdd:COG1894     4 TRVLLRNCGIIDPESLEDYIARGGYQALRKALTEM-TPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPgDPKYLVCN 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  97 SDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYLRGEFHHEpFENFELALADAYANGWLGKNILGSGVDIDI 176
Cdd:COG1894    83 ADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLA-IERLEKAIEEAREAGLLGKNILGSGFDFDI 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 177 YGALGAGAYICGEETALMESLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKI 256
Cdd:COG1894   162 EVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 257 FSVSGCVQKGGNFEVPLGTTFDELL-EMAGGLRPGRKLKGVVPGGVSMPVLKADQvAGLQMDYDTLRALGTGLGSGAIVV 335
Cdd:COG1894   242 FSLSGHVKNPGLYEVPMGTTLRELIyDIGGGIRGGRKLKAVQPGGPSGGCLPAEH-LDTPMDYESLAAAGSMLGSGGMIV 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 336 LDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQ 415
Cdd:COG1894   321 MDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPNPVL 400

                         410
                  ....*....|....*...
gi 2431621462 416 GFLRQFWDEFEYYIVNGR 433
Cdd:COG1894   401 STLKYFRDEFEAHIKDKR 418
PRK13596 PRK13596
NADH-quinone oxidoreductase subunit NuoF;
21-444 0e+00

NADH-quinone oxidoreductase subunit NuoF;


Pssm-ID: 237441  Cd Length: 433  Bit Score: 548.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  21 VYTTLHYDTPWSYESYLKTGGYAALRKILE---EKIppadvIEMVKASNLRGRGGAGFPTGLKWSFMPKGTMQK--YILC 95
Cdd:PRK13596    8 IFTNLYGLQDWSLKGAKKRGDWDGTKAILDkgrDWI-----IEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRphYLVV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  96 NSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYLRGEFHHEpFENFELALADAYANGWLGKNILGSGVDID 175
Cdd:PRK13596   83 NADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIRE-REALQAAIDEAYEAGLIGKNACGSGWDFD 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 176 IYGALGAGAYICGEETALMESLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255
Cdd:PRK13596  162 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 256 IFSVSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQMDYDTLRALGTGLGSGAI 333
Cdd:PRK13596  242 LFCISGHVNKPCNVEEAMGIPFRELIEKhAGGVRGGwDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAV 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 334 VVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWP 413
Cdd:PRK13596  322 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 401

                         410       420       430
                  ....*....|....*....|....*....|.
gi 2431621462 414 IQGFLRQFWDEFEYYIVNGRSIVDTQVGVAA 444
Cdd:PRK13596  402 IQGLIRHFRPEIEERIDQYTANAHSDPLEAA 432
PTZ00304 PTZ00304
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
 21-429 8.38e-158

NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional


Pssm-ID: 185547 [Multi-domain]  Cd Length: 461  Bit Score: 454.24  E-value: 8.38e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  21 VYTTLHYDTPWSYESYLKTGGYAALRKILEEKipPADVIEMVKASNLRGRGGAGFPTGLKWSFMPKGTMQ---KYILCNS 97
Cdd:PTZ00304   28 IFTNLYRDFDTYIDGALKRGDWYRTKDILLKG--HDWIIDEIKKSGLRGRGGAGFPSGLKWSFMPKVKPDgrpSYLVVNA 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  98 DESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYLRGEFHHEpFENFELALADAYANGWLGKNILGSGVDIDIY 177
Cdd:PTZ00304  106 DESEPGTCKDREIMRHDPHKLVEGALLAGFAMRARAAYIYIRGEFYNE-ARALQQAIDEAYKKGFLGKNACGSGYDFDVY 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 178 GALGAGAYICGEETALMESLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIF 257
Cdd:PTZ00304  185 VHRGAGAYICGEETALIESIEGKPGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWFASFGRPNNAGTKLF 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 258 SVSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQMDYDTLRALGTGLGSGAIVV 335
Cdd:PTZ00304  265 CISGHVNNPCTVEEEMSIPLRELIERhCGGVRGGwDNLLCVIPGGSSVPLIPKEICDNVLMDFDALKEVQSGLGTAAVIV 344

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 336 LDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQ 415
Cdd:PTZ00304  345 MDKSTDIIDAILRLSKFYKHESCGQCTPCREGTPWLVKMMERFVVGNADKEEIDTLEEVSKQIEGHTICALGDAAAWPVQ 424

                         410
                  ....*....|....
gi 2431621462 416 GFLRQFWDEFEYYI 429
Cdd:PTZ00304  425 GLIRHFRPEIEERI 438
PLN03132 PLN03132
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
 6-431 6.23e-153

NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional


Pssm-ID: 178678 [Multi-domain]  Cd Length: 461  Bit Score: 441.62  E-value: 6.23e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462   6 APSGPVGPAPQPHQV----------VYTTLHYDTPWSYESYLKTGGYAALRKILEEKipPADVIEMVKASNLRGRGGAGF 75
Cdd:PLN03132   14 ATPQPPPPPPPPEKThfgglkdedrIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKG--PDWIVNEMKKSGLRGRGGAGF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  76 PTGLKWSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYLRGEFHHEPFeNFELA 153
Cdd:PLN03132   92 PSGLKWSFMPKVSDGRpsYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEYVNERL-NLERA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 154 LADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVP 233
Cdd:PLN03132  171 RHEAYAAGLLGKNACGSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSP 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 234 AIIRNGPEWFLGLSKTKNGGPKIFSVSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQV 311
Cdd:PLN03132  251 TILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERhCGGVRGGwDNLLAIIPGGSSVPLLPKKIC 330

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 312 AGLQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLERIVAGKATMEDLHQL 391
Cdd:PLN03132  331 DDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWDIMERMKVGNAKLEEIDML 410

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 2431621462 392 RTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVN 431
Cdd:PLN03132  411 QEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 450
PRK11278 PRK11278
NADH-quinone oxidoreductase subunit NuoF;
34-426 2.37e-124

NADH-quinone oxidoreductase subunit NuoF;


Pssm-ID: 236891 [Multi-domain]  Cd Length: 448  Bit Score: 368.36  E-value: 2.37e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  34 ESYLKTGGYAALRKILEEkIPPADVIEMVKASNLRGRGGAGFPTGLKWSFMPKG-TMQ-KYILCNSDESEPGTCKDRDIL 111
Cdd:PRK11278   28 DEYRSKNGYEGARKALTG-MSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDeSMNiRYLLCNADEMEPGTYKDRLLM 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 112 RYNPHSVVEGMAIACYATGSTVGYNYLRGEFHhEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEET 191
Cdd:PRK11278  107 EQLPHLLVEGMLISAFALKAYRGYIFLRGEYI-EAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEET 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 192 ALMESLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLS--KTKNGGPKIFSVSGCVQKGGNF 269
Cdd:PRK11278  186 ALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISkgKSKDAGTKLMGFSGRVKNPGLW 265

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 270 EVPLGTTFDELLE-MAGGLRPGRKLKGVVPGGVSMPVLKADQVaGLQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACR 348
Cdd:PRK11278  266 ELPFGTTAREILEdYAGGMRDGLKFKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRN 344

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431621462 349 ISQFFHKESCGQCTPCREGTGWMHRVLERIVAGKATMEDLHQLRTVAGQI-EGHTICAFGEAAAWPIQGFLRQFWDEFE 426
Cdd:PRK11278  345 LEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYFREEFE 423
Complex1_51K pfam01512
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
62-233 1.33e-54

Respiratory-chain NADH dehydrogenase 51 Kd subunit;


Pssm-ID: 460237 [Multi-domain]  Cd Length: 150  Bit Score: 178.48  E-value: 1.33e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  62 VKASNLRGRGGAGFPTGLKWSFMPKGTMqKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYLRGE 141
Cdd:pfam01512   1 VKEAGIVGRGGAGFPTHVKLSPPPKKKI-KYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIRDE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 142 fHHEPFENFELALADAYAngwlgknilgSGVDIDIygALGAGAYICGEETALMESLEGkKGQPRYKPpfPANFGLygkpt 221
Cdd:pfam01512  80 -KPEAIAALEKAIAEARA----------AGFDIEV--HRGAGAYPCGEEKALIYSLTG-RGVPRGKP--PADVGV----- 138

                         170
                  ....*....|..
gi 2431621462 222 TINNTETYASVP 233
Cdd:pfam01512 139 VVNNVETLAAVP 150
NADH_4Fe-4S pfam10589
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
344-428 9.10e-42

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;


Pssm-ID: 463160 [Multi-domain]  Cd Length: 85  Bit Score: 142.62  E-value: 9.10e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 344 RFACRISQFFHKESCGQCTPCREGTGWMHRVLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWD 423
Cdd:pfam10589   1 DVARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSLCGLGDGAANPVLSALRYFRD 80


                  ....*
gi 2431621462 424 EFEYY 428
Cdd:pfam10589  81 EFEAH 85
NADH_4Fe-4S smart00928
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
343-388 2.08e-22

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;


Pssm-ID: 197996 [Multi-domain]  Cd Length: 46  Bit Score: 89.51  E-value: 2.08e-22
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2431621462  343 VRFACRISQFFHKESCGQCTPCREGTGWMHRVLERIVAGKATMEDL 388
Cdd:smart00928   1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
RnfC COG4656
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ...
 51-308 7.77e-12

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 443694 [Multi-domain]  Cd Length: 451  Bit Score: 66.70  E-value: 7.77e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  51 EKIPPADVIEMVKASNLRGRGGAGFPTGLKWSFMPKGTMqKYILCNSDESEPG-TCKDRdILRYNPHSVVEGMAIACYAT 129
Cdd:COG4656   117 EDLSPEEIIERIREAGIVGLGGAGFPTHVKLSPPPDKKI-DTLIINGAECEPYlTCDDR-LMRERAEEIIEGIRILMKAL 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 130 GSTVGY-----NYlrgefhHEPFENFELALADAYangwlgknilgsgvDIDI------YGAlgagayicGEETALMESLE 198
Cdd:COG4656   195 GAKKVIigiedNK------PEAIAALRKALAGDD--------------DIEVvvlptkYPQ--------GGEKQLIKALT 246

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 199 GKK---GQprykppFPANFGLygkptTINNTETYASV-PAIIRNGP--EwflglsktknggpKIFSVSG-CVQKGGNFEV 271
Cdd:COG4656   247 GREvpsGG------LPADVGV-----VVQNVGTAYAIyRAVRDGKPliE-------------RVVTVTGdAVKEPGNLLV 302

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 2431621462 272 PLGTTFDELLEMAGGLRPgrKLKGVVPGGVSM---------PVLKA 308
Cdd:COG4656   303 RIGTPVSDLLEQAGGFKE--EPGKLIMGGPMMgfalpsldvPVTKG 346
rnfC TIGR01945
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ...
 50-307 4.72e-10

electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273888 [Multi-domain]  Cd Length: 435  Bit Score: 61.21  E-value: 4.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462  50 EEKIPPADVIEMVKASNLRGRGGAGFPTGLKWSfMPKGTMQKYILCNSDESEPG-TCKDRdILRYNPHSVVEGMAIACYA 128
Cdd:TIGR01945 116 FENLSPEEILEKIRAAGIVGLGGATFPTHVKLN-PPPEKKIETLIINGAECEPYlTCDDR-LMRERAEEIIGGIRILLKI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 129 TG---STVGynylrgefhhepFENFELalaDAYANgwLGKNILGSGVDIdiygALGAGAYICGEETALMESLEGK---KG 202
Cdd:TIGR01945 194 LGvkkVVIG------------IEDNKP---EAIAA--LKKALGGYNIKV----RVLPTKYPQGGEKQLIYALTGRevpSG 252

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462 203 QprykppFPANFGLygkptTINNTETYASVPAIIRNGpewfLGLSKtknggpKIFSVSG-CVQKGGNFEVPLGTTFDELL 281
Cdd:TIGR01945 253 G------LPADIGV-----VVQNVGTAFAIYEAVVNG----KPLIE------RVVTVTGdAIRRPKNLWVLIGTPVSDIL 311

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2431621462 282 EMAGGLRpGRKLKgVVPGGVSM---------PVLK 307
Cdd:TIGR01945 312 AFCGGFR-EKPER-LIMGGPMMglalpsldvPVTK 344
SLBB pfam10531
SLBB domain;
256-306 1.45e-08

SLBB domain;


Pssm-ID: 463136 [Multi-domain]  Cd Length: 56  Bit Score: 50.74  E-value: 1.45e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2431621462 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGGLRPGRKLKGVV-----PGGVSMPVL 306
Cdd:pfam10531   1 VVTVTGEVKRPGNYEVPIGTTLSDLIELAGGFTDDADLDINLrrlkrPGGPMMGIA 56
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 5-124 2.35e-03

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 40.32  E-value: 2.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431621462   5 HAP-SGPV---GPAPQPHQ-------VVYTTLHYDT-----PWSyesylktgGYAALrkileekiPPADVIEMVKASNLR 68
Cdd:PRK05035   77 HAPtSGTVvaiEPHPTAHPsglaelcVVIEPDGEDRwierqPWA--------DYRQL--------SPEELIERIRQAGIA 140

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2431621462  69 GRGGAGFPTGLKWSfmPKGTMQKYILCNSDESEPG-TCKDRdILRYNPHSVVEGMAI 124
Cdd:PRK05035  141 GLGGAGFPTAVKLQ--PGGDKIETLIINGAECEPYiTADDR-LMRERADEIIEGIRI 194
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 263-308 8.90e-03

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 38.39  E-value: 8.90e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2431621462 263 VQKGGNFEVPLGTTFDELLEMAGGlRPGRKLKgVVPGGVSM---------PVLKA 308
Cdd:PRK05035  299 VARPGNVWARLGTPVRHLLNQAGF-KPDADQR-VIMGGPMMgftlpsldvPVVKT 351
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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