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Conserved domains on  [gi|2445580979|gb|WDE88714|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Setophaga palmarum]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.58e-164

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 462.75  E-value: 1.58e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   1 MNPQANLIFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  81 TGQWDITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPALLTTLAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVMMTATIFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 2445580979 321 TSITIAILTTMSVMLLPISPMILTLV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.58e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 462.75  E-value: 1.58e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   1 MNPQANLIFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  81 TGQWDITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPALLTTLAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVMMTATIFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 2445580979 321 TSITIAILTTMSVMLLPISPMILTLV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 4.45e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.78  E-value: 4.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----THPASSM 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  97 ILTSAIAM------KLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPA------LLTTLAILSTAL 164
Cdd:pfam00361  81 LLLLFLLIlvgflfKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 165 GGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYVMMTATIFL-TLNTIKVLKLSTLMTA----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2445580979 236 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 7.67e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 101.73  E-value: 7.67e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  90 ---THPASSMILTSAIAM-------KLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPITLLYMTSPSLNPA--- 152
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADwql 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 153 LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YVMMTATIFLTLNTIK----- 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2445580979 224 VLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 298
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 7.86e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.09  E-value: 7.86e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  93 ASSMILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLP---PITLLYMTSPSLNPA----L 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEawqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 154 LTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVM----MTATIFLTLNTIKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFiyalMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2445580979 227 ---LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.58e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 462.75  E-value: 1.58e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   1 MNPQANLIFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  81 TGQWDITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPALLTTLAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVMMTATIFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 2445580979 321 TSITIAILTTMSVMLLPISPMILTLV 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 8.50e-141

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 402.65  E-value: 8.50e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   1 MNPQANLIFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  81 TGQWDITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSlNPALLTTLAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVMMTATIFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRT-NK 319
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLpST 319

                         330       340
                  ....*....|....*....|....*..
gi 2445580979 320 STSITIAILTTMSVMLLPISPMILTLV 346
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 1.12e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 386.97  E-value: 1.12e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   1 MNPQANLIFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  81 TGQWDITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPALLTTLAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVMMTATIFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKS 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*
gi 2445580979 321 TSITIAILTTMSVMLLPISPMILTL 345
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 7.00e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 349.53  E-value: 7.00e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   1 MNPQANLIFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  81 TGQWDITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPALLTTLAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVMMTATIFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWR-TN 318
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                         330       340
                  ....*....|....*....|....*..
gi 2445580979 319 KSTSITIAILTTMSVMLLPISPMILTL 345
Cdd:MTH00105  320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-345 2.59e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 297.27  E-value: 2.59e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   1 MNPQANLIFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  81 TGQWDITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPALLTTLAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVMMTATIFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKS 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*
gi 2445580979 321 TSITIAILTTMSVMLLPISPMILTL 345
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 2.54e-81

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 251.39  E-value: 2.54e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   1 MNPQANLIFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  81 TGQWDITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPALLTTLAIL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVMMTATIFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKS 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330
                  ....*....|....*.
gi 2445580979 321 TSITIAILTTMSVMLL 336
Cdd:MTH00041  321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 1.76e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 186.95  E-value: 1.76e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   1 MNPQANLIFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  81 tgqwdITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTspsLNPALLTTLAIL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVMMTATIFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWRTNKS 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311

                         330       340
                  ....*....|....*....|....*
gi 2445580979 321 TSITIaILTTMSVMLLPISPMILTL 345
Cdd:MTH00160  312 SLILN-FLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 1.00e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 155.81  E-value: 1.00e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   5 ANLIFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  85 DitqlthpaSSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPA-LLTTLAILSTA 163
Cdd:MTH00144   85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAyLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 164 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVMMTATIFLTLNTiKVLKLSTLMTAWTKIPSLNAM 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2445580979 244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-331 1.53e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 153.01  E-value: 1.53e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   7 LIFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSmtnawhTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  87 TQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPALLTTLAILSTALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 167 WMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVMMTATIFLTLNTIKVLKLSTLMTAWTKIPSLNAMLLL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYcTTITLPPHTTNhMKQWRTNKSTSITIA 326
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-LKSAPYEPKTKILIS 320


                  ....*
gi 2445580979 327 ILTTM 331
Cdd:MTH00011  321 MCTLS 325
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-302 2.63e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 130.95  E-value: 2.63e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   8 IFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  88 qLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLymTSPSLNPALLTTLAILSTALGGW 167
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 168 MGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVMMTATIFLTLNTIKVLKLSTlMTAWTKIPSLNAMLLLT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2445580979 248 LLSLAG-LPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00197  232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 2.49e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 104.73  E-value: 2.49e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  79 WHTGQWDITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNpaLLTTLA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 159 ILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYVMMTATIFLTLNTIKVLK--LSTLMT 232
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2445580979 233 AWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 4.45e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.78  E-value: 4.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----THPASSM 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  97 ILTSAIAM------KLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPA------LLTTLAILSTAL 164
Cdd:pfam00361  81 LLLLFLLIlvgflfKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 165 GGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYVMMTATIFL-TLNTIKVLKLSTLMTA----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2445580979 236 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 7.67e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 101.73  E-value: 7.67e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  90 ---THPASSMILTSAIAM-------KLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPITLLYMTSPSLNPA--- 152
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADwql 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 153 LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YVMMTATIFLTLNTIK----- 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2445580979 224 VLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 298
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 1.82e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 97.78  E-value: 1.82e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   8 IFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI 86
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  87 ----TQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPALLTtlAILST 162
Cdd:MTH00199  181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 163 ALGGWMGLNQTQIRKILAFSSISHLGW----MAIIIIYNPKLTLLNFYLYVMMTATIFLTLNTIKVLK--LSTLMTAWTK 236
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                         250       260       270
                  ....*....|....*....|....*....|.
gi 2445580979 237 IPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 2.94e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 94.12  E-value: 2.94e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  93 ASSMI------------LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPITLLYMTSPSLNPA---L 153
Cdd:PRK05777  193 LADGSgnsllllfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 154 LTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YVMMTATIFLTLNTIK-----V 224
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2445580979 225 LKLSTL-MTAWTKiPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRL 296
Cdd:PRK05777  353 ESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 7.86e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.09  E-value: 7.86e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  93 ASSMILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLP---PITLLYMTSPSLNPA----L 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEawqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 154 LTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYVM----MTATIFLTLNTIKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFiyalMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2445580979 227 ---LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-192 4.22e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 76.05  E-value: 4.22e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   3 PQANLIFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQAAASALVLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  74 SMTNAWHTGQ-----------WDITQLTHPASSM---ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPI 139
Cdd:MTH00198  267 CALYFGFTGNegmlgtilsatLETTNIELRQGSLgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2445580979 140 TLLymTSPSLNPALLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:MTH00198  347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-279 4.09e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 72.87  E-value: 4.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  93 ASSM----------ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIM-KLPPITLL--------YMTSPSLNPAL 153
Cdd:COG0651   196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVYAILrvltllfgADPALFLGTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 154 LTtLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYV----MMTATIFLTLNTIKVL---- 225
Cdd:COG0651   276 LV-LGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAAGAIERAtgtr 354

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2445580979 226 KLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAA 279
Cdd:COG0651   355 DLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLA 408
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 3.42e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 70.03  E-value: 3.42e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   7 LIFITSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLTQAAASALVL--FSSM--TNAWHT 81
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  82 GQWDI------TQLTHPASSMI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITL----LYMTSP 147
Cdd:CHL00049  194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFY 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 148 SLNPA---LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIII-------YNPKLTLLNFYlyvmmtatIFL 217
Cdd:CHL00049  274 FSSNEwhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFY--------IFM 345

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2445580979 218 TLNTIKVLKLSTLMTA----------WTKIPSLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049  346 NLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 5.33e-13

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 69.69  E-value: 5.33e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  50 PRAIEAATKYFLTQAAASALVLF-SSMTNAWHTGQwdiTQLTHPASSMI-------------LTSAIAMKLGLVPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 116 PEVLQGSPLTTGLLLSTIMKLP----PITLLYMTSPSLNP---ALLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                  ....
gi 2445580979 189 WMAI 192
Cdd:PRK02504  314 FVMI 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 6.21e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.18  E-value: 6.21e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  49 HPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW--DITQLTHPASSMILTSAI--------AMKLGLVPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAQLLLflaffiafAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 119 LQGSPLTTGLLLSTIM-KLP-------PITLLYMTSPSLNPALLTtLAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ..
gi 2445580979 191 AI 192
Cdd:COG1008   315 LL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 2.36e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 61.65  E-value: 2.36e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSmtnAWHTGQWDITQLTHPASSM-------------IL 98
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  99 TSAIAMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTIMKLPPI--TLLYMTSPSLNPA----LLTTLAILSTALGGWMGL 170
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 171 NQTQIRKILAFSSISHLGWM------AIIIIYNPKLT----------LLNFYLYVMMTATIFLT-------LNTIKVLKL 227
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagaviyeTGTRNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2445580979 228 STLMTawtKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  387 GGLAR---TMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 4.25e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 49.18  E-value: 4.25e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2445580979 291 FFYLRLAYCTTITLPPHTTNHMKQWRTNKSTSIT-IAILTTMSVMLLPISP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 1.86e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.45  E-value: 1.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  87 TQLTHPAS----SMILTSAIAM------KLGLVPFHFWFPEVLQGSP-LTTGLLLSTIMKLPPITLLYMTS-------PS 148
Cdd:PRK08676  191 TELAAHASllspSVLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2445580979 149 LNPALLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIII 194
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 3.90e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.48  E-value: 3.90e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  50 PRAIEAATKYFLTQAAASALVLFSSMTNAW-HTGQWDITQL-THPASSMILT-------SAIAMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFGVQTwlflaffIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 121 GSPLTTGLLLSTIM-KLPPITLLYMTSPSLNPA------LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAII 193
Cdd:TIGR01972 232 EAPTAGSVILAGVLlKMGTYGFLRFNLPLFPDAslyfapVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311


                  .
gi 2445580979 194 I 194
Cdd:TIGR01972 312 I 312
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-190 1.46e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 49.77  E-value: 1.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   7 LIFITSLLLgttITISSNHWVMaWTGLEINTLAILPLISKSHH-PRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWD 85
Cdd:COG1009   118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  86 ITQLTHPASSMILTSAI----------AM-KLGLVPFHFWFPEVLQG-SPLTTgLLLSTIMKLPPITLLYMTSP--SLNP 151
Cdd:COG1009   194 FSELLAAAPTILSSPLLtlillllllgAFgKSAQFPLHFWLPDAMEGpTPVSA-LLHAATMVKAGVYLLARLSPlfALSP 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2445580979 152 ALLTTLAI--LSTAL-GGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1009   273 VWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 5.32e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.89  E-value: 5.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  50 PRAIEAATKYFLTQAAASALVLFSSMTNAWH----TGQWDITQLTHPASSMILTS--------AIAMKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 118 VLQGSPLTTGLLLSTIM-KLPPITLLYMTSPSLNPA------LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILlKMGAYGLLRFSLPLFPDAshefapIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFV 316


                  ....
gi 2445580979 191 AIII 194
Cdd:PRK05846  317 TLGI 320
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 5.76e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 47.95  E-value: 5.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-SMTNAwHTGQWDITQLTHPASSM--------ILTSAIA 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGALAENptvvtafgFVLLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 104 MKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLY-----------MTSPSLNPALLTtLAILSTALGGWMGLNQ 172
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIriyftvfggdfRFALGLGWLLAV-LALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 173 TQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YVMMTATIFLTLNTIKVL----KLSTLMTAWTKIPSLNAML 244
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAF 372

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2445580979 245 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 298
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 80-263 6.25e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 48.00  E-value: 6.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  80 HTGQWDITQL-THPASSMILTSAIAM-------KLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLL------YMT 145
Cdd:PRK12644  183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFAD 262

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 146 SPSLNPALLtTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIII-IYNPKLTLLNFYLYV---MMTATIFLTLNT 221
Cdd:PRK12644  263 VPVWRPTVL-VLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGLAMLLahaLFKAALFLVVGI 341

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2445580979 222 I-------KVLKLSTLmtaWTKIPSLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  342 IdhstgtrDIRKLSGL---GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-192 1.19e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 46.85  E-value: 1.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979   8 IFITSLLLgttiTISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSM---TNAWhtgqw 84
Cdd:PRK06458  116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAA----- 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  85 diTQLTHPASSMILTSAIAM----------------------KLGLVPFHFWFPEVLQGSP-----LTTGLLLST-IMKL 136
Cdd:PRK06458  187 --TVMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVaLYAV 264

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2445580979 137 PPITLLYMTSPSLNPA--LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK06458  265 LRYYILIDAAIGSDFPgrLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-275 1.25e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 46.91  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  34 EINTLAILPLISKSHHpRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDIT-------QLTHPASSMI----LTSAI 102
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIvflfLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 103 AMKLGLVPFHFWFPE-----------VLQGSPLTTG-----LLLSTIM--KLPPITLLYMTSPSLNpALLTTLAILSTAL 164
Cdd:PRK08668  207 VAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygflLVLYVLPgtKLFSEFGTYRGVPLFN-YILAWLGNISIIV 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 165 GGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLT----LLNFYLYVMMTATIFLTLNTI----KVLKLSTLMTAWTK 236
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEK 365

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2445580979 237 IPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:PRK08668  366 MPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 6.85e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 44.31  E-value: 6.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  55 AATKYFLTQAAASALVLFSSMTNAWHTG--QWDITQL---THPASSMILTSA-----IAMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2445580979 124 LTTGLLLSTIMKLPPITLL------YMTSPSLNPALLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 2.06e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.02  E-value: 2.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 105 KLGLvpfHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPALLTTLAI-----LSTALGGWMGLNQTQIRKIL 179
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 180 AFSSISHLGWMAIIIIY--NPKLTLLNFYLYVMMTATIFLTLNTI---------KVLKLSTLMTAwtkIPSLNAMLLLTL 248
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVihsttvdeqDMRKMGGLIHS---IPFTYTMMLIGS 394

                         170       180
                  ....*....|....*....|
gi 2445580979 249 LSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  395 FSIMGLPYLTGFYSKDLILE 414
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
95-268 2.30e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 43.01  E-value: 2.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  95 SMILTSAIAMKLGLVPFhFWFPEVLQGSPLTTGLLLSTIMKLPPI-------TLLYMTSPSLNPALLTTLAILSTALGGW 167
Cdd:PRK12663  210 ALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVIGAL 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 168 MGLNQTQIRKILAFSSISHLGWM-AIIIIYNPK-LTLLNFYLY---VMMTAtIFLTLNTIKVL----KLSTLMTAWTKIP 238
Cdd:PRK12663  289 GALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVhdmVVKTA-LFLIAGSLVRLtgyrSLQYLGGLYRKEP 367

                         170       180       190
                  ....*....|....*....|....*....|
gi 2445580979 239 SLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663  368 LFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 2.49e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.80  E-value: 2.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-----SMTNAWHTGqwDITQLTHP--------ASSMILT 99
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 100 SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITL------------LYMTSPSLNPALLTtLAILSTALGGW 167
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFNNVFMI-LAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 168 MGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYV----MMTATIFLTLNTIK----VLKLSTLMTAWTKIPS 239
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                         250       260
                  ....*....|....*....|....*...
gi 2445580979 240 LNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 2.50e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.60  E-value: 2.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 101 AIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTI-MKLPPITLLYMTSP-------SLNPALLtTLAILSTALGGWMGLNQ 172
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                          90       100
                  ....*....|....*....|...
gi 2445580979 173 TQIRKILAFSSISHLGWMAIIII 195
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITLV 340
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 2.54e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 42.71  E-value: 2.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  55 AATKYFLTQAAASALVLFSSMTNAWHTGQ--WDITQLTH---PASSMILTS-----AIAMKLGLVPFHFWFPE------- 117
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDahgeasa 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 118 ----VLQGSPLTTG--LLLSTIMKLPPITLLYmtspsLNPALLTtLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMA 191
Cdd:PRK12561  218 pvsmILAGVLLKMGgyALIRFNVQMLPDAHVY-----FAPALAI-LGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291


                  ...
gi 2445580979 192 III 194
Cdd:PRK12561  292 LGI 294
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-266 4.83e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.83  E-value: 4.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 109 VPFHFWFPEVLQG-SPLTTGLLLSTIMKLPpITLLYMTSPSL--NPALLTTLAI---LSTALGGWMGLNQTQIRKILAFS 182
Cdd:PRK12647  212 FPFHFWLPNAMEApTPVSAYLHSATMVKAG-IYLLARLNPVLggTPLWQTILPLfggLTMLTGALLAVRQTDLKLILAYS 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 183 SISHLGWMAIIIIYNPKLTLLNFYLYV----MMTATIFLTLNTIK-------VLKLSTLmtaWTKIPSLNAMLLLTLLSL 251
Cdd:PRK12647  291 TVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSM 367

                         170
                  ....*....|....*
gi 2445580979 252 AGLPPLTGFLPKWLI 266
Cdd:PRK12647  368 AGLPPLFGFLAKELI 382
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 6.40e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 41.55  E-value: 6.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  52 AIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPASSMILTSAIAMKLGLV----------------PFHFWF 115
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 116 PEVLQGSPLTTGLLLSTIMKLPPITLLYMTSP--SLNPALLTTLAILSTA---LGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 1.48e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.47  E-value: 1.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  55 AATKYFLTQAAASALVLFSSMTNAWHTGQWD------ITQLTHPASSMILTSAI----AMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 124 LTTGLLLSTIMKLPPITL------LYMTSPSLNPALLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYN 197
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 198 PKLTLLNFYLYvMMTATIFLTL------------NTIKVLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK07363  318 TQLSLLGAVAQ-MISHGLILALlfhlvgiverkvGTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFI 396


                  ...
gi 2445580979 266 IIQ 268
Cdd:PRK07363  397 VFQ 399
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 101-188 1.78e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 40.05  E-value: 1.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 101 AIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTI-MKLPPITLLYMTSPSLNPA------LLTTLAILSTALGGWMGLNQT 173
Cdd:MTH00204  218 SLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGIlLKLGGYGFLRFSWPLFPAAseyfapLIVMLSVIAVIYGSLTTCRQV 297

                          90
                  ....*....|....*
gi 2445580979 174 QIRKILAFSSISHLG 188
Cdd:MTH00204  298 DFKRLIAYSSVAHMG 312
PRK12650 PRK12650
DUF4040 family protein;
29-194 2.01e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.03  E-value: 2.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  29 AWtglEINTLAILPLISKSHhPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP---ASSMILTSAIAM- 104
Cdd:PRK12650  138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSdvwAEKPGLTTVVAVl 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 105 -------KLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSL--NPA---LLTTLAILSTALGGWMGLNQ 172
Cdd:PRK12650  214 iavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQK 293

                         170       180
                  ....*....|....*....|..
gi 2445580979 173 TQIRKILAFSSISHLGWMAIII 194
Cdd:PRK12650  294 TDLKKLTAYSTVSQLGWIVATI 315
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 2.14e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.63  E-value: 2.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  34 EINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQ-----LTHPASSMILTSAIAMKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 109 V------PFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLL-------YMTS--PSLNPALLTtLAILSTALGGWMGLNQT 173
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMlvifklfGGLSyfPSAQGVLIA-LSVLAMVFGVVMALLQT 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 174 QIRKILAFSSISHLGWMAIIIIYNPKLT----LLNFYLYVMMTATIFLTLNTI----KVLKLSTLMTAWTKIPSLNAMLL 245
Cdd:PRK06277  289 DYKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFMVL 368

                         250       260
                  ....*....|....*....|...
gi 2445580979 246 LTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277  369 CAKLAISGVPPFNGFQSKLMLAQ 391
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
13-190 4.28e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.91  E-value: 4.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  13 LLLGTTITISSNHWVM---AW--TGLEINTLailpLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDIT 87
Cdd:PRK08168  109 VLAAVHLLVLSDHLLVliaAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLS 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  88 QL-----THPASS------MILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLyMTSPSLNPA---- 152
Cdd:PRK08168  185 ALwahlaAQGASPslqaaaLLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLI-RFAPLLEQAppar 263

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2445580979 153 -LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK08168  264 wLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK12646 PRK12646
DUF4040 family protein;
92-188 6.15e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 38.58  E-value: 6.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  92 PASSMILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPA-----LLTTLAILSTALGG 166
Cdd:PRK12646  211 PMIFMFLLGAFT-KSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFGS 289

                          90       100
                  ....*....|....*....|..
gi 2445580979 167 WMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK12646  290 ITALKQWDLKGILAYSTISQLG 311
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 6.45e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 38.39  E-value: 6.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH--PASSMILTSAIAMKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 111 FHFWFPEVLQGSPLTTGLLLSTI-MKLPPITLLYMTSPSLNPAL-LTTLAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVvVKAGVFPLVRCALDVPGLDLiVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 189 WmaiiIIYNPKLTLLNFYLYVMMTATIFLTLNTIKVLKL----STLMTAWTKIPSLNAmllltLLSLAGLPPLTGFLPKW 264
Cdd:PRK07234  283 F----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNFteliSQMLGIGKWIPLTMA-----SFSIAGFPLLAGFVSKV 353


                  ....*..
gi 2445580979 265 LIIQELT 271
Cdd:PRK07234  354 LTLKNLL 360
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 7.16e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 38.17  E-value: 7.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979  55 AATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPASSMILT-----SAIAMKLGLVPFHFWFPEVLQGSPLTTGLL 129
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 130 LSTIM-KLPPITLLYMTSPSLNP-----ALLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLG--WMAIIIIYNPKLT 201
Cdd:PRK08667  243 MSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiiLMGIGLYVIFGVY 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2445580979 202 LLNFYLYVMMTATIFLTLNTiKVLKLSTLMTAWT------------------KIPSLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK08667  323 GLDTLALLALGGALFHSLNH-ALFKSLLFLTAGSvvhatgtrniekmgglvkLMPYTSALFLVGAVSIAALPPFNGFASE 401


                  ....*..
gi 2445580979 264 WLIIQEL 270
Cdd:PRK08667  402 LLLYESF 408
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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