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Conserved domains on  [gi|2452618656|gb|WEG23709|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Castor fiber subsp. birulai]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.87e-58

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 175.51  E-value: 1.87e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   1 MNLIVALTLNSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2452618656  81 TNNLYPVILMALALIIVLSLGLAYEWSQKGLEWNE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.87e-58

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 175.51  E-value: 1.87e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   1 MNLIVALTLNSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2452618656  81 TNNLYPVILMALALIIVLSLGLAYEWSQKGLEWNE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 2.54e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 88.63  E-value: 2.54e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656  18 ITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQTNNLYPVILMALaLIIV 97
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLI-FIAI 79

                          90
                  ....*....|....*
gi 2452618656  98 LSLGLAYEWSQKGLE 112
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-113 1.19e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 74.77  E-value: 1.19e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   3 LIVALtlnsLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQTN 82
Cdd:COG0838    12 LLVAL----GLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFREL 87

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2452618656  83 NLYPVILMaLALIIVLSLGLAYEWSQKGLEW 113
Cdd:COG0838    88 GWFGLIEM-LVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.87e-58

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 175.51  E-value: 1.87e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   1 MNLIVALTLNSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2452618656  81 TNNLYPVILMALALIIVLSLGLAYEWSQKGLEWNE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 1.88e-39

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 127.73  E-value: 1.88e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   1 MNLIVA-LTLNSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWAL 79
Cdd:MTH00136    1 MNLITTiLTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2452618656  80 QTNNLYPVILMALALIIVLSLGLAYEWSQKGLEWNE 115
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 1.38e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 120.10  E-value: 1.38e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   3 LIVALTLNSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQTN 82
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2452618656  83 NLYPVILMALALIIVLSLGLAYEWSQKGLEWNE 115
Cdd:MTH00069   82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-113 2.72e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 119.60  E-value: 2.72e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   1 MNLIVALTLNSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2452618656  81 TNNLYPVILMALALIIVLSLGLAYEWSQKGLEW 113
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 3.34e-30

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 104.29  E-value: 3.34e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   1 MNLIVALTLNSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00042    2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2452618656  81 TNNLYPVILMALALIIVLSLGLAYEWSQKGLEWNE 115
Cdd:MTH00042   82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-113 7.40e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 103.05  E-value: 7.40e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   1 MNLIV-ALTLNSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWAL 79
Cdd:MTH00203    1 MNLIMlFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2452618656  80 QTNnlYPVILMALALIIVLSLGLAYEWSQKGLEW 113
Cdd:MTH00203   81 QLS--SLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-113 2.06e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 89.53  E-value: 2.06e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   1 MNLIVALTLNSLLAIFLITIAFWIPQINIYN-EKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWAL 79
Cdd:MTH00148    2 LSILLSLLFALILSPVLLLLGLVLSKRSYSDrEKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2452618656  80 QTNNLYPVILMALALIIVLSLGLAYEWSQKGLEW 113
Cdd:MTH00148   82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDW 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 2.54e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 88.63  E-value: 2.54e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656  18 ITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQTNNLYPVILMALaLIIV 97
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLI-FIAI 79

                          90
                  ....*....|....*
gi 2452618656  98 LSLGLAYEWSQKGLE 112
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-113 1.26e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 82.13  E-value: 1.26e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   2 NLIVALTLNSLLAIFLITIAFWIPQINIYN-EKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDrEKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2452618656  81 TNNLYPVILMALALIIVLSLGLAYEWSQKGLEW 113
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 3-113 1.27e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 82.35  E-value: 1.27e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   3 LIVALTLNSLLAIFLITIAFwipQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQTN 82
Cdd:MTH00202    8 SILSILISSLLFLVSWMLSF---RSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSS 84

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2452618656  83 NLYPVILMALALIIVLSLGLAYEWSQKGLEW 113
Cdd:MTH00202   85 WSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-113 1.68e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 77.06  E-value: 1.68e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656  32 EKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQTNNLYPVILMALALIIvLSLGLAYEWSQKGL 111
Cdd:MTH00055   37 EKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLII-LTIGLIYEWVKGGL 115


                  ..
gi 2452618656 112 EW 113
Cdd:MTH00055  116 EW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-113 5.15e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 75.67  E-value: 5.15e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   1 MNLIVALTLNSLLAIFLITIAFWIPQINIYN--EKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTAdrEKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2452618656  79 LQTNNLYPVILMALALIIVLSLGLAYEWSQKGLEW 113
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDW 115
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-113 1.19e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 74.77  E-value: 1.19e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   3 LIVALtlnsLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQTN 82
Cdd:COG0838    12 LLVAL----GLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFREL 87

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2452618656  83 NLYPVILMaLALIIVLSLGLAYEWSQKGLEW 113
Cdd:COG0838    88 GWFGLIEM-LVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-113 5.11e-17

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 70.48  E-value: 5.11e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   1 MNLIVALTLNSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQ 80
Cdd:MTH00018    1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYN 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2452618656  81 TNNLYPVILMALALIIvLSLGLAYEWSQKGLEW 113
Cdd:MTH00018   81 QIAPFGFWTMVGFLFI-LTLGLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-114 5.12e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 68.42  E-value: 5.12e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656  31 NEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQTNNLYPvILMALALIIVLSLGLAYEWSQKG 110
Cdd:MTH00030   41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFS-FWIVYTFLIVLAIGLAYEWIKGG 119


                  ....
gi 2452618656 111 LEWN 114
Cdd:MTH00030  120 LEWD 123
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 3-113 2.06e-15

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 66.43  E-value: 2.06e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   3 LIVAltlnSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALllplpwalqtn 82
Cdd:PRK06602   15 LIVA----IGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAF----------- 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2452618656  83 nLYP--VILM---------ALALIIVLSLGLAYEWSQKGLEW 113
Cdd:PRK06602   80 -LFPwaVSFReigwlgfveAMIFILVLLVGLVYLWRKGALDW 120
ndhC CHL00022
NADH dehydrogenase subunit 3
 7-113 3.28e-09

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 50.37  E-value: 3.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   7 LTLNSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEialllplpwalqTNNLYP 86
Cdd:CHL00022   14 LIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVE------------TVFLYP 81

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2452618656  87 -----------VILMALALIIVLSLGLAYEWSQKGLEW 113
Cdd:CHL00022   82 wamsfdvlgvsAFIEALIFVLILIVGLVYAWRKGALEW 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
5-114 4.89e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 50.13  E-value: 4.89e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   5 VALTLNSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWALQTNNL 84
Cdd:PRK07756   14 IFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGL 93

                          90       100       110
                  ....*....|....*....|....*....|
gi 2452618656  85 YPVILMaLALIIVLSLGLAYEWSQKGLEWN 114
Cdd:PRK07756   94 FALIEM-LIFVVMLLVGLAYAWKKKVLQWL 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 3-114 6.60e-09

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 49.67  E-value: 6.60e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656   3 LIVALTLNSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLP--FSMKFFLIAITFLLFDLEIALLLPLPWALQ 80
Cdd:PRK07928    7 ILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFD 86

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2452618656  81 TNNLYPVILMALALIIVlSLGLAYEWSQKGLEWN 114
Cdd:PRK07928   87 ALGVFGLVEMALFMLTV-FVAYAYVWRRGGLEWD 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 9.93e-05

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 38.88  E-value: 9.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2452618656  33 KSNPYECGFDPMGSARlPFSMKFFLIAITFLLFDLEIALLLPLPWALQTNNLYPVILMaLALIIVLSLGLAYEWSQKGLE 112
Cdd:PRK08489   47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFKLLGLFGLIEM-LLFIVLLTIGFIYAWKKGALE 124


                  .
gi 2452618656 113 W 113
Cdd:PRK08489  125 W 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-69 2.88e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 37.18  E-value: 2.88e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2452618656   1 MNLIVALTLNSLLAIFLITIAFWIPQINIYNEKSNPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEI 69
Cdd:MTH00092    2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEI 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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