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Conserved domains on  [gi|2468023908|gb|WEV90607|]
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cytochrome b, partial (mitochondrion) [Lasiopodomys raddei]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-293 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 577.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00100   76 GWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00100  156 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLL 235

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00100  236 ILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSM 315

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVILMPM 293
Cdd:MTH00100  316 MFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPI 368
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-293 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 577.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00100   76 GWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00100  156 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLL 235

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00100  236 ILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSM 315

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVILMPM 293
Cdd:MTH00100  316 MFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPI 368
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-292 2.20e-99

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 296.70  E-value: 2.20e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSY----SMIetWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLS 76
Cdd:COG1290    85 GWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkprELN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFG 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  77 AIPYIGPTLVEWIWGGFSVDKATLTRFFAFH-FILPFIITALVMIHLLFLHETGSNNPTG----LNSDADKIPFHPYYTI 151
Cdd:COG1290   163 AIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTV 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 152 KDFLGALILLTSFMTLVLFLPDtlGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILALM 229
Cdd:COG1290   243 KDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLL 320

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2468023908 230 PLLHTSKQRTLTFRPITQTMYWILVADLLILTWIGGQPVehPFIIIGQTASIAYFTIIVILMP 292
Cdd:COG1290   321 PFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLP 381
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-131 1.55e-62

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 196.05  E-value: 1.55e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYS--MIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAI 78
Cdd:cd00284    68 GWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAI 147

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2468023908  79 PYIGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSN 131
Cdd:cd00284   148 PVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-129 1.14e-58

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 186.05  E-value: 1.14e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYS--MIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAI 78
Cdd:pfam00033  59 GWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSypRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAI 138

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2468023908  79 PYIGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETG 129
Cdd:pfam00033 139 PVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 183-252 1.08e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.48  E-value: 1.08e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2468023908 183 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTLTF-RPITQTMYWI 252
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVFLF 135
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-293 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 577.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00100   76 GWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00100  156 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLL 235

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00100  236 ILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSM 315

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVILMPM 293
Cdd:MTH00100  316 MFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPI 368
CYTB MTH00119
cytochrome b; Provisional
 1-293 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 534.87  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00119   77 GWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPY 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00119  157 IGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLM 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00119  237 LTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSM 316

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVILMPM 293
Cdd:MTH00119  317 TFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPL 369
CYTB MTH00131
cytochrome b; Provisional
 1-293 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 526.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00131   76 GWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPY 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00131  156 VGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAIL 235

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00131  236 LLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGL 315

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVILMPM 293
Cdd:MTH00131  316 TFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPL 368
CYTB MTH00074
cytochrome b; Provisional
 1-293 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 506.91  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00074   77 GWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPY 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00074  157 MGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIM 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00074  237 LTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSL 316

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVILMPM 293
Cdd:MTH00074  317 MFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPL 369
CYTB MTH00191
cytochrome b; Provisional
 1-293 1.55e-178

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 496.74  E-value: 1.55e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00191   73 GWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPY 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00191  153 IGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFIL 232

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00191  233 LFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSN 312

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVILMPM 293
Cdd:MTH00191  313 TFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-291 1.17e-172

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 481.59  E-value: 1.17e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00156   66 GWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPY 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00156  146 LGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIM 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00156  226 LMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGN 305

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVILM 291
Cdd:MTH00156  306 QFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-290 8.68e-166

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 464.76  E-value: 8.68e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00145   77 GWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPY 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00145  157 VGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVL 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00145  237 LFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSL 316

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVIL 290
Cdd:MTH00145  317 SFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL 366
CYTB MTH00034
cytochrome b; Validated
 1-293 1.83e-162

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 456.47  E-value: 1.83e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00034   76 GWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPY 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00034  156 IGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLIL 235

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00034  236 FAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSS 315

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVILMPM 293
Cdd:MTH00034  316 TFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPL 368
CYTB MTH00016
cytochrome b; Validated
 1-290 9.72e-156

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 439.50  E-value: 9.72e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00016   77 GWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPY 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00016  157 IGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVM 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00016  237 LFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGL 316

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVIL 290
Cdd:MTH00016  317 SFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMIN 366
CYTB MTH00053
cytochrome b; Provisional
 1-293 3.25e-140

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 400.24  E-value: 3.25e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00053   77 GFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPY 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00053  157 VGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVIL 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00053  237 LIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGL 316

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVILMPM 293
Cdd:MTH00053  317 SFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPL 369
CYTB MTH00022
cytochrome b; Validated
 1-293 1.85e-139

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 398.30  E-value: 1.85e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00022   75 GFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 154

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00022  155 VGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVL 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00022  235 FFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGL 314

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVILMPM 293
Cdd:MTH00022  315 TFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPL 367
CYTB MTH00224
cytochrome b; Provisional
 1-289 1.02e-138

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 396.60  E-value: 1.02e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00224   77 GWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPY 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00224  157 IGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIA 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTL 240
Cdd:MTH00224  237 ILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSL 316

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVI 289
Cdd:MTH00224  317 PFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 1-293 1.18e-105

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 312.64  E-value: 1.18e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00033   73 GWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPS 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00033  153 VGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLIL 232

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVL--FLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQR 238
Cdd:MTH00033  233 FGVFVIIGIepRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIR 312

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2468023908 239 TLTFRPITQTMYWILVADLLILTWIGGQPV-EHPFIIIGQTASIAYFTIIVILMPM 293
Cdd:MTH00033  313 SLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPL 368
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-292 2.20e-99

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 296.70  E-value: 2.20e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSY----SMIetWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLS 76
Cdd:COG1290    85 GWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkprELN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFG 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  77 AIPYIGPTLVEWIWGGFSVDKATLTRFFAFH-FILPFIITALVMIHLLFLHETGSNNPTG----LNSDADKIPFHPYYTI 151
Cdd:COG1290   163 AIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTV 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 152 KDFLGALILLTSFMTLVLFLPDtlGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILALM 229
Cdd:COG1290   243 KDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLL 320

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2468023908 230 PLLHTSKQRTLTFRPITQTMYWILVADLLILTWIGGQPVehPFIIIGQTASIAYFTIIVILMP 292
Cdd:COG1290   321 PFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLP 381
CYTB MTH00086
cytochrome b; Provisional
 1-291 2.78e-98

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 292.61  E-value: 2.78e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 80
Cdd:MTH00086   65 GWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPI 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  81 IGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00086  145 WGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFW 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTsFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSkqrTL 240
Cdd:MTH00086  225 LV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TS 300

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIAYFTIIVILM 291
Cdd:MTH00086  301 CLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 2-291 7.80e-78

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 240.66  E-value: 7.80e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   2 WLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYI 81
Cdd:MTH00046   68 WCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIV 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  82 GPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSNNPTGL-NSDADKIPFHPYYTIKDFLGALIL 160
Cdd:MTH00046  148 GSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVV 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 161 LTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILIlalmpLLHTSKQRTL 240
Cdd:MTH00046  228 CSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFF-----LWVPTFNGSS 302

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2468023908 241 TFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTASIayftIIVILM 291
Cdd:MTH00046  303 VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSV----LMVLLL 349
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-131 1.55e-62

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 196.05  E-value: 1.55e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYS--MIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAI 78
Cdd:cd00284    68 GWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAI 147

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2468023908  79 PYIGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETGSN 131
Cdd:cd00284   148 PVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-129 1.14e-58

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 186.05  E-value: 1.14e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYS--MIETWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAI 78
Cdd:pfam00033  59 GWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSypRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAI 138

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2468023908  79 PYIGPTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALVMIHLLFLHETG 129
Cdd:pfam00033 139 PVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 132-279 1.24e-51

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 166.28  E-value: 1.24e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 132 NPTGLNSDADKIPFHPYYTIKDFLGALILLTSFMTLVLFLPDTLGDPDNFTPANPLNTPPHIKPEWYFLFAYAILRSIPN 211
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2468023908 212 KLGGVLALILSILILALMPLLHTSKQRTlTFRPITQTMYWILVADLLILTWIGGQPVEHPFIIIGQTA 279
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
13-178 5.83e-44

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 147.39  E-value: 5.83e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  13 SMFFICLYLHVGRGIYYGSYSMIE--TWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGPTLVEWIW 90
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908  91 GGFSVDKATLTRFFAFHF-ILPFIITALVMIHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDFLGALILLTSFMTLVL 169
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2468023908 170 FLPDTLGDP 178
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
183-283 2.34e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 133.37  E-value: 2.34e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908 183 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTLTFRPITQTMYWILVADLLILTW 262
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2468023908 263 IGGQPVEHPFIIIGQTASIAY 283
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 1-133 2.05e-26

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 103.25  E-value: 2.05e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIE--TWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAI 78
Cdd:PRK03735   87 GWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAI 166

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2468023908  79 PYIGPTLVEWIWGGFSVDKATLTRFFAFH-FILPFIITALVMIHLLFLHETGSNNP 133
Cdd:PRK03735  167 PVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 1-133 1.08e-22

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 93.25  E-value: 1.08e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468023908   1 GWLIRYMHANGASMFFICLYLHVGRGIYYGSYSMIE--TWNMGIVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAI 78
Cdd:CHL00070   79 GWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAI 158

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2468023908  79 PYIGPTLVEWIWGGFSVDKATLTRFFAFH-FILPFIITALVMIHLLFLHETGSNNP 133
Cdd:CHL00070  159 PVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 183-216 2.28e-07

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 49.41  E-value: 2.28e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2468023908 183 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 216
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGI 99
petD CHL00058
cytochrome b6/f complex subunit IV
 183-252 2.49e-07

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 49.61  E-value: 2.49e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2468023908 183 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTLTF-RPITQTMYWI 252
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPVATTVFLI 135
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 183-252 1.08e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.48  E-value: 1.08e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2468023908 183 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPLLHTSKQRTLTF-RPITQTMYWI 252
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVFLF 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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