NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2473904341|gb|WFD50120|]
View 

cytochrome b, partial (mitochondrion) [Xanthonycticebus pygmaeus]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-207 6.89e-141

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 398.24  E-value: 6.89e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00100  173 ATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGD 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00100  253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADL 332

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILVLMPLASL*ENKLLKW 207
Cdd:MTH00100  333 LTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-207 6.89e-141

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 398.24  E-value: 6.89e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00100  173 ATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGD 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00100  253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADL 332

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILVLMPLASL*ENKLLKW 207
Cdd:MTH00100  333 LTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 35-182 8.23e-54

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 168.98  E-value: 8.23e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  35 NPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGDPDNYTPANPLITPPHIKPEWYFLFAYAILRSIPN 114
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2473904341 115 KLGGVMALAMSILILALIPHLHTAKQRSmMFRPLSQCLFWVLVANLLTLTWIGGQPVENPFIIIGQTA 182
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-201 2.87e-52

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 172.28  E-value: 2.87e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFH-FILPFIITALAMIHLIFLHETGSNNPSGVSSDS----DKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSP 75
Cdd:COG1290   184 ATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKtekvDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  76 DllGDPDNYTPANPLITPPHIKPEWYFLFAYAILRSIP--NKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLF 153
Cdd:COG1290   264 I--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALG 341

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2473904341 154 WVLVANLLTLTWIGGQPVenPFIIIGQTASILYFLTILVLMPLASL*E 201
Cdd:COG1290   342 VAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
86-186 4.51e-47

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 149.94  E-value: 4.51e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  86 PANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANLLTLTW 165
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2473904341 166 IGGQPVENPFIIIGQTASILY 186
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 86-167 3.68e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 53.65  E-value: 3.68e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  86 PANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMF-RPLSQCLFwvLVANLLTLt 164
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 2473904341 165 WIG 167
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-207 6.89e-141

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 398.24  E-value: 6.89e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00100  173 ATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGD 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00100  253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADL 332

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILVLMPLASL*ENKLLKW 207
Cdd:MTH00100  333 LTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-207 1.15e-128

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 367.30  E-value: 1.15e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00119  174 PTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGD 253

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00119  254 PENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANL 333

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILVLMPLASL*ENKLLKW 207
Cdd:MTH00119  334 LILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-207 9.44e-124

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 354.73  E-value: 9.44e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00131  173 ATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGD 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00131  253 PDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADV 332

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILVLMPLASL*ENKLLKW 207
Cdd:MTH00131  333 LILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-207 2.12e-120

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 346.28  E-value: 2.12e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00074  174 ATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGD 253

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00074  254 PDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANT 333

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILVLMPLASL*ENKLLKW 207
Cdd:MTH00074  334 LILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-196 5.23e-112

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 324.18  E-value: 5.23e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00191  170 ATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGD 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00191  250 PENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANF 329

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILVLMPL 196
Cdd:MTH00191  330 ILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00145
cytochrome b; Provisional
 1-205 5.40e-102

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 299.51  E-value: 5.40e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00145  174 ATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGD 253

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00145  254 PENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNF 333

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILVLmPLASL*ENKLL 205
Cdd:MTH00145  334 FILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 1-205 2.99e-101

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 297.39  E-value: 2.99e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00034  173 ATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALND 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00034  253 PENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATF 332

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILVLMPLASL*ENKLL 205
Cdd:MTH00034  333 FILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00156
cytochrome b; Provisional
 1-194 1.64e-100

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 294.77  E-value: 1.64e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00156  163 ATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGD 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00156  243 PENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIV 322

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILVLM 194
Cdd:MTH00156  323 ILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00016
cytochrome b; Validated
 1-206 1.91e-92

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 275.02  E-value: 1.91e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00016  174 ATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGD 253

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00016  254 PENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNF 333

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFlTILVLMPLASL*ENKLLK 206
Cdd:MTH00016  334 LLLTWIGGRPVEPPYEFLGQIFTVFYF-FYFMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-206 1.40e-91

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 273.12  E-value: 1.40e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00053  174 ATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGD 253

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00053  254 AENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDF 333

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILVLMPLASL*ENKLLK 206
Cdd:MTH00053  334 FLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 1-206 1.35e-84

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 255.01  E-value: 1.35e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00022  172 ATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGD 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00022  252 PENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDF 331

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILVLMPLASL*ENKLLK 206
Cdd:MTH00022  332 ILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-206 1.08e-78

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 240.21  E-value: 1.08e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00224  174 ATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTD 253

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00224  254 PENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSW 333

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFlTILVLMPLASL*ENKLLK 206
Cdd:MTH00224  334 AILTWIGGRPVEDPFEGIGQVFTILYF-SYFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 2-202 7.70e-57

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 183.99  E-value: 7.70e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   2 TLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLG--AIFLLTTLSVLVLFSPDLLG 79
Cdd:MTH00033  171 TLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGflILFGVFVIIGIEPRIETLLQ 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  80 DPDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVAN 159
Cdd:MTH00033  251 DPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGD 330

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2473904341 160 LLTLTWIGGQPV-ENPFIIIGQTASILYFLTILVLMPLASL*EN 202
Cdd:MTH00033  331 FIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 35-182 8.23e-54

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 168.98  E-value: 8.23e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  35 NPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGDPDNYTPANPLITPPHIKPEWYFLFAYAILRSIPN 114
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2473904341 115 KLGGVMALAMSILILALIPHLHTAKQRSmMFRPLSQCLFWVLVANLLTLTWIGGQPVENPFIIIGQTA 182
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
CYTB MTH00086
cytochrome b; Provisional
 1-194 4.65e-53

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 173.59  E-value: 4.65e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVlFSPDLLGD 80
Cdd:MTH00086  162 ATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFIIFSL-FYPFNLGD 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLhtaKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00086  241 PEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVVN 317

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILVLM 194
Cdd:MTH00086  318 VILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-201 2.87e-52

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 172.28  E-value: 2.87e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFH-FILPFIITALAMIHLIFLHETGSNNPSGVSSDS----DKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSP 75
Cdd:COG1290   184 ATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKtekvDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  76 DllGDPDNYTPANPLITPPHIKPEWYFLFAYAILRSIP--NKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLF 153
Cdd:COG1290   264 I--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALG 341

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2473904341 154 WVLVANLLTLTWIGGQPVenPFIIIGQTASILYFLTILVLMPLASL*E 201
Cdd:COG1290   342 VAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
86-186 4.51e-47

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 149.94  E-value: 4.51e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  86 PANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFRPLSQCLFWVLVANLLTLTW 165
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2473904341 166 IGGQPVENPFIIIGQTASILY 186
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
CYTB MTH00046
cytochrome b; Validated
 2-192 2.65e-40

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 140.50  E-value: 2.65e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   2 TLTRFFAFHFILPFIITALAMIHLIFLHETGSNNP-SGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLGD 80
Cdd:MTH00046  165 TLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLD 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  81 PDNYTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGvMALAMSILILALIPhlhtAKQRSMMFRPLSQCLFWVLVANL 160
Cdd:MTH00046  245 IEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLF 319

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2473904341 161 LTLTWIGGQPVENPFIIIGQTASILYFLTILV 192
Cdd:MTH00046  320 FSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-81 8.77e-12

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 60.72  E-value: 8.77e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341   1 ATLTRFFAFHF-ILPFIITALAMIHLIFLHETGSNNPSGVSSDSDKIPFHPYYSFKDLLGAIFLLTTLSVLVLFSPDLLG 79
Cdd:pfam13631  88 ATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQINPIWLG 167


                  ..
gi 2473904341  80 DP 81
Cdd:pfam13631 168 GP 169
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 86-167 1.58e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 57.50  E-value: 1.58e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  86 PANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMF-RPLSQCLFwvLVANLLTLt 164
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVF--LFGTLVTL- 142


                  ...
gi 2473904341 165 WIG 167
Cdd:COG5679   143 WLG 145
petD CHL00058
cytochrome b6/f complex subunit IV
 86-146 7.15e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 55.39  E-value: 7.15e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2473904341  86 PANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMFR 146
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFR 125
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 86-167 3.68e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 53.65  E-value: 3.68e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2473904341  86 PANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVMALAMSILILALIPHLHTAKQRSMMF-RPLSQCLFwvLVANLLTLt 164
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 2473904341 165 WIG 167
Cdd:TIGR01156 142 WLG 144
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-34 1.90e-08

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 52.37  E-value: 1.90e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETGSN 34
Cdd:cd00284   167 ATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-32 1.57e-07

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 49.69  E-value: 1.57e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2473904341   1 ATLTRFFAFHFILPFIITALAMIHLIFLHETG 32
Cdd:pfam00033 158 ATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH