|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10747 |
PRK10747 |
putative protoheme IX biogenesis protein; Provisional |
12-398 |
0e+00 |
|
putative protoheme IX biogenesis protein; Provisional
Pssm-ID: 182695 [Multi-domain] Cd Length: 398 Bit Score: 762.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 12 IAGIVLGPMLAGHQGYVLIQTDNYNIETSVTGLVIILILGVVVLLAVEWILRRIFRTGAHTRGWFVGRKRRRARKQTEQA 91
Cdd:PRK10747 12 IAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKRRRARKQTEQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 92 LLKLAEGDYQQVEKLMSKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERASELSPKDPIPVEITRVRLQLARNENHA 171
Cdd:PRK10747 92 LLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 172 ARHGIDRLLEVSPRHPEVLRLAEQAYIRTGAWGSLLDIIPSMAKADVGDDEHRDELQRLAWIGLMDQARADLGSDGLKTW 251
Cdd:PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 252 WKNQSRKTRQQVPLQVAMAEHLIECDDHDTAQEILLDGLKRQYDDRLVMVIPRLKTNNPEQIEKMLRQQIKAVGDRPLLW 331
Cdd:PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLW 331
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2485371352 332 STLGQSLMKHGEWQEASLAFRAALKQRPDAFDYAWLADSLDKQHKPEEAAAMRRDGLLLTLQNNGIQ 398
Cdd:PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQNNPPQ 398
|
|
| TPR_hemY_coli |
TIGR00540 |
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ... |
20-387 |
8.49e-120 |
|
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]
Pssm-ID: 273126 [Multi-domain] Cd Length: 367 Bit Score: 351.98 E-value: 8.49e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 20 MLAGHQGYVLIQTDNYNIETSVTGLVIILILGVVVLLAVEWILRRIFRTGAHTRGWFVGRKRRRARKQTEQALLKLAEGD 99
Cdd:TIGR00540 1 ALAGNTGYVLIVYPPYRIELSLNFFVLLLVLLFVVLYILLRLIRRVFRLPRRVRAWRSRRKQRRAQQATREGLIALFEGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 100 YQQVEKLMSKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERASELSPKDPIPVEITRVRLQLARNENHAARHGIDRL 179
Cdd:TIGR00540 81 YSQAEKKATKAAEHSENPLLAYLLAARAAQQMGDEERRDRYLAEAAELAPNSELAVLLTRAELLLDQRDYEAALAALDSL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 180 LEVSPRHPEVLRLAEQAYIRTGAWGSLLDIIPSMAKADVGDDEHRDELQRLAWIGLMDQARADlGSDGLKTWWKNQSRKT 259
Cdd:TIGR00540 161 QAQAPRHTAVLRLALRAYQRSGNWDALLKLLPALRKAKALSPEEAARLEQQAYIGLLDEAREE-DADALKTWWKQLPRAE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 260 RQQVPLQVAMAEHLIECDDHDTAQEILLDGLKRQYDDRLVMVIPRLKTNNPEQIEKMLRQQIKAVGDRPLLWSTLGQSLM 339
Cdd:TIGR00540 240 RQEPELAVAAAEALIQLGDHDEAEKLIEEALKKEWDPELLRLYGRLQPGDPSPLIKRAEKWLKKHPDDALLLLALGRLCL 319
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2485371352 340 KHGEWQEASLAFRAALKQRPDAFDYAWLADSLDKQHKPEEAAAMRRDG 387
Cdd:TIGR00540 320 RQQLWGKAQSYLEASLSLAPTEEAHLELAQLFEQLGDTEAAAQHYRKS 367
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
87-392 |
2.68e-95 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 287.96 E-value: 2.68e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 87 QTEQALLKLAEGDYQQVEKLMSKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERASELSPKDPIPVEITRVRLQLAR 166
Cdd:COG3071 19 ALLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAVLLTRAELLLDQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 167 NENHAARHGIDRLLEVSPRHPEVLRLAEQAYIRTGAWGSLLDIIPSMAKADVGDDEHRDELQRLAWIGLMDQARADlgSD 246
Cdd:COG3071 99 GQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALERRAYLGLLRQAARD--AE 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 247 GLKTWWKNQSRKTRQQVPLQVAMAEHLIECDDHDTAQEILLDGLKRQYDDRLVMVIPRLKTNNPEQIEKMLRQQIKAVGD 326
Cdd:COG3071 177 ALKALWKALPRAERRDPELAAAYARALIALGDHDEAERLLREALKRQWDPRLVRLYGRLQGGDPAKQLKRAEKWLKKHPN 256
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2485371352 327 RPLLWSTLGQSLMKHGEWQEASLAFRAALKQRPDAFDYAWLADSLDKQHKPEEAAAMRRDGLLLTL 392
Cdd:COG3071 257 DPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
|
|
| HemY_N |
pfam07219 |
HemY protein N-terminus; This family represents the N-terminus (approximately 150 residues) of ... |
29-132 |
1.41e-35 |
|
HemY protein N-terminus; This family represents the N-terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. This is a membrane protein involved in a late step of protoheme IX synthesis.
Pssm-ID: 429353 [Multi-domain] Cd Length: 104 Bit Score: 126.09 E-value: 1.41e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 29 LIQTDNYNIETSVTGLVIILILGVVVLLAVEWILRRIFRTGAHTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVEKLMS 108
Cdd:pfam07219 1 LIVWGGYRIETSLWVAVLLLVLLFVLLYLLLRLLRLLLRLPGRVRRWRRRRRRRKARKALSEGLIALAEGDWAQAEKLAA 80
|
90 100
....*....|....*....|....
gi 2485371352 109 KNADHAEQPVVNYLLAAEAAQQRG 132
Cdd:pfam07219 81 KAAKLLDAPLLNYLLAARAAQLQG 104
|
|
| HemYx |
COG3898 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ... |
7-246 |
9.33e-13 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];
Pssm-ID: 443105 [Multi-domain] Cd Length: 468 Bit Score: 69.54 E-value: 9.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 7 LFILLIAGIVLGPMLAGHQGYVLIQTDNYNIETSVTGLVIILILGVVVLLAVEWILRRIFRTGAHTRGWFVGRKRRRARK 86
Cdd:COG3898 7 FLALVAALALGAAWLADRPGTVSITWLGYEIETSLLVAAIALLVLAAAVWLLWRLLRFLLGSPTALSRYFRRRRRRKGYQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 87 QTEQALLKLAEGDYQQVEKLMSKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERASElSPKdpipveiTRV------ 160
Cdd:COG3898 87 ALSRGLIAVAAGDGRLARRKAAKAERLLDRPPLTLLLEAQAAQLAGDREAARRAFEAMLE-DPE-------TRFlglrgl 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 161 -RLQLARNENHAARHGIDRLLEVSPRHPEVLRLAEQAYIRTGAWGSLLDIIPSMAKADVGDdehRDELQRLAWIGLMDQA 239
Cdd:COG3898 159 mVEALRRGDTEAALALAEEALALAPKLPWAQDALLELQAAAGDWDGALATLDAALKAGLLD---KDVARRRRAVLLTARA 235
|
....*..
gi 2485371352 240 RADLGSD 246
Cdd:COG3898 236 RELEEGD 242
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
89-388 |
4.54e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.05 E-value: 4.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 89 EQALLKLAEGDYQQVEKLMSKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERASELSPKDPipveitRVRLQLARNE 168
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLELAQDY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 169 NHA-----ARHGIDRLLEVSPRHPEVLRLAEQAYIRTGAWGSLLDIIPSMAKADVGDDEHRDELQRLAW-IGLMDQARAd 242
Cdd:COG2956 87 LKAglldrAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLeQGDYDEAIE- 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 243 lgsdglktWWKNQSRKTRQQVPLQVAMAEHLIECDDHDTAQEILLDGLKRqyddrlvmviprlktnNPEQIEKMLRqqik 322
Cdd:COG2956 166 --------ALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ----------------DPDYLPALPR---- 217
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2485371352 323 avgdrpllwstLGQSLMKHGEWQEASLAFRAALKQRPDAFDYAWLADSLDKQHKPEEAAAMRRDGL 388
Cdd:COG2956 218 -----------LAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
67-293 |
6.85e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 56.28 E-value: 6.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 67 RTGAHTRGWFVGRKRRRARKQTEQALLKLAE-----GDYQQVEKLMSKNADHAEQPVVNYLLAAEAAQQRGDEARANQHL 141
Cdd:COG2956 54 RRGEYDRAIRIHQKLLERDPDRAEALLELAQdylkaGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 142 ERASELSPKDPIpVEITRVRLQLARNENHAARHGIDRLLEVSPRHPEVLRLAEQAYIRTGAWGSLLDIIPSMAKADVGDD 221
Cdd:COG2956 134 ERLLKLGPENAH-AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYL 212
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2485371352 222 EHRDELQRLAwiglMDQARADLGSDGLKTWWKNQsrktrQQVPLQVAMAEHLIECDDHDTAQEILLDGLKRQ 293
Cdd:COG2956 213 PALPRLAELY----EKLGDPEEALELLRKALELD-----PSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
82-204 |
6.20e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 48.26 E-value: 6.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 82 RRARKQTEQALLKLAEGDYQQVEKLMSKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERASELSPKDPIpVEITRVR 161
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE-ARLNLGL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2485371352 162 LQLARNENHAARHGIDRLLEVSPRHPEVLRLAEQAYIRTGAWG 204
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
261-394 |
2.83e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.34 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 261 QQVPLQVAMAEHLIECDDHDTAQEILLDGLKRQYDD---RLVMVIPRLKTNNPEQIEKMLRQQIKAVGDRPLLWSTLGQS 337
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNpeaFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2485371352 338 LMKHGEWQEASLAFRAALKQRP-DAFDYAWLADSLDKQHKPEEAAAMRRDGLLLTLQN 394
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPeHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
305-383 |
5.58e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.45 E-value: 5.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 305 LKTNNPEQIEKMLRQQIKAVGDRPLLWSTLGQSLMKHGEWQEASLAFRAALKQRPDAFD-YAWLADSLDKQHKPEEAAAM 383
Cdd:COG3914 123 LALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEaLNNLGNALQDLGRLEEAIAA 202
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
79-395 |
1.73e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.00 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 79 RKRRRARKQTEQALLKLA-----EGDYQQVEKlmskNADHAEQPVVNYLLA----AEAAQQRGDEARANQHLERASELSP 149
Cdd:TIGR02917 217 RKAIALRPNNIAVLLALAtilieAGEFEEAEK----HADALLKKAPNSPLAhylkALVDFQKKNYEDARETLQDALKSAP 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 150 KDPIPVEITRVrLQLARNENHAARHGIDRLLEVSPRHPEVLRLAEQAYIRTGAWGSLLDIIPSMAKADVGDDEHRDELQR 229
Cdd:TIGR02917 293 EYLPALLLAGA-SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 230 lAWIGLMDQARA-DLGSDGLKTWWKNQSRKTRQQVpLQVAMAEHLIECDDHDTAQEILLDGLkrqyDDRLVMVIPRLKTN 308
Cdd:TIGR02917 372 -AYLALGDFEKAaEYLAKATELDPENAAARTQLGI-SKLSQGDPSEAIADLETAAQLDPELG----RADLLLILSYLRSG 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 309 NPEQIEKMLRQQIKAVGDRPLLWSTLGQSLMKHGEWQEASLAFRAALKQRPDAFDYAWLADSLDKQHKPEEAAAMRRDGL 388
Cdd:TIGR02917 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKV 525
|
....*..
gi 2485371352 389 LLTLQNN 395
Cdd:TIGR02917 526 LTIDPKN 532
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
79-293 |
2.34e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 42.87 E-value: 2.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 79 RKRRRARKQTEQALLKLaegdYQQ----------VEKLMSKNADHAEQPVVNYL--LAAEAaQQRGDEARANQHLERASE 146
Cdd:PRK11788 134 VDEGDFAEGALQQLLEI----YQQekdwqkaidvAERLEKLGGDSLRVEIAHFYceLAQQA-LARGDLDAARALLKKALA 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 147 LSPKDPIPVeITRVRLQLARNENHAARHGIDRLLEVSPRH-PEVLRLAEQAYIRTGAWgslldiipsmakadvgdDEHRD 225
Cdd:PRK11788 209 ADPQCVRAS-ILLGDLALAQGDYAAAIEALERVEEQDPEYlSEVLPKLMECYQALGDE-----------------AEGLE 270
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2485371352 226 ELQRLawigLMDQARADlgsdglktwwknqsrktrqqvpLQVAMAEHLIECDDHDTAQEILLDGLKRQ 293
Cdd:PRK11788 271 FLRRA----LEEYPGAD----------------------LLLALAQLLEEQEGPEAAQALLREQLRRH 312
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
101-211 |
5.84e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 5.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 101 QQVEKLMSKNADHAEqpvvNYLLAAEAAQQRGDEARANQHLERASELSPKDPiPVEITRVRLQLARNENHAARHGIDRLL 180
Cdd:COG4235 4 ARLRQALAANPNDAE----GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNA-DALLDLAEALLAAGDTEEAEELLERAL 78
|
90 100 110
....*....|....*....|....*....|....*...
gi 2485371352 181 EVSPRHPEVLRLAEQAYIRTG-------AWGSLLDIIP 211
Cdd:COG4235 79 ALDPDNPEALYLLGLAAFQQGdyaeaiaAWQKLLALLP 116
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
305-388 |
7.29e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 7.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 305 LKTNNPEQIEKMLRQQIKAVGDRPLLWSTLGQSLMKHGEWQEAsLAFRAALKQRPDAFD-YAWLADSLDKQHKPEEAAAM 383
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEaLLNLAELLLELGDYDEALAY 81
|
....*
gi 2485371352 384 RRDGL 388
Cdd:COG3063 82 LERAL 86
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
305-382 |
7.65e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.22 E-value: 7.65e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2485371352 305 LKTNNPEQIEKMLRQQIKAVGDRPLLWSTLGQSLMKHGEWQEASLAFRAALKQRPDAFDYAW-LADSLDKQHKPEEAAA 382
Cdd:COG4235 28 LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYlLGLAAFQQGDYAEAIA 106
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
121-383 |
1.27e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.22 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 121 YLLAAEAAQQRGDEARANQHLERASELSPKDPiPVEITRVRLQLARNENHAARHGIDRLLEVSPRHPEVLRLAEQAYIRT 200
Cdd:TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFF-PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 201 GAWGSLLDIIPSMAKADVGD----------------------------DEHRDELQRLAWIGLMDQARADLgSDGLKTWW 252
Cdd:TIGR02917 547 GNEEEAVAWLEKAAELNPQEiepalalaqyylgkgqlkkalailneaaDAAPDSPEAWLMLGRAQLAAGDL-NKAVSSFK 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 253 KNQSRKTRQQVPLQVAMAEHLIEcDDHDTAQEILLDGLKRQYDDR---LVMVIPRLKTNNPEQIEKMLRQQIKAVGDRPL 329
Cdd:TIGR02917 626 KLLALQPDSALALLLLADAYAVM-KNYAKAITSLKRALELKPDNTeaqIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2485371352 330 LWSTLGQSLMKHGEWQEASLAFRAALKQRPDAFDYAWLADSLDKQHKPEEAAAM 383
Cdd:TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKT 758
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
123-365 |
1.66e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 40.75 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 123 LAAEAAQQRGDEARANQHLERASELSPKDPIPVEITRVRLQLARNENHAARHGIDRLLEVSPRHPEVLRLAEQAyirtga 202
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAA------ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 203 wgslldiipsmakadvgddEHRDELQRLAWIGLMDQARADLgsdglktwwknqsRKTRQQVPLQVA----MAEHLIECDD 278
Cdd:COG3914 80 -------------------LLELAALLLQALGRYEEALALY-------------RRALALNPDNAEalfnLGNLLLALGR 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 279 HDTAQEILLDGLKRQYDD---RLVMVIPRLKTNNPEQIEKMLRQQIKAVGDRPLLWSTLGQSLMKHGEWQEASLAFRAAL 355
Cdd:COG3914 128 LEEALAALRRALALNPDFaeaYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
|
250
....*....|
gi 2485371352 356 KQRPDAFDYA 365
Cdd:COG3914 208 ELDPDNADAH 217
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
317-383 |
2.05e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.06 E-value: 2.05e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2485371352 317 LRQQIKAVGDRPLLWSTLGQSLMKHGEWQEASLAFRAALKQRPD-AFDYAWLADSLDKQHKPEEAAAM 383
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDnADALLDLAEALLAAGDTEEAEEL 73
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
328-360 |
2.28e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.19 E-value: 2.28e-03
10 20 30
....*....|....*....|....*....|...
gi 2485371352 328 PLLWSTLGQSLMKHGEWQEASLAFRAALKQRPD 360
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
305-383 |
3.87e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 305 LKTNNPEQIEKMLRQQIK-----AVGDRPLLWstLGQSLMKHGEWQEASLAFRAALKQRPDAFDYA----WLADSLDKQH 375
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKrypnsPLAPDALYW--LGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdallKLGLSYLELG 81
|
....*...
gi 2485371352 376 KPEEAAAM 383
Cdd:COG1729 82 DYDKARAT 89
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
91-361 |
5.33e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 38.91 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 91 ALLKLAEGDYQQV----EKLMSKNADHAEQpvvnYLLAAEAAQQRGDEARANQHLERASELSPkDPIPVEITRVRLQLAR 166
Cdd:TIGR02917 608 GRAQLAAGDLNKAvssfKKLLALQPDSALA----LLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 167 NENHAARHGIDRLLEVSPRHPEVLRLAEQAYIRTGAWGSLLDIIpsmakadvgddEHRDELQRLAWIgLMDQARADLGS- 245
Cdd:TIGR02917 683 KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY-----------RKALKRAPSSQN-AIKLHRALLASg 750
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 246 ------DGLKTWWKNQSrktrQQVPLQVAMAEHLIECDDHDTAQEILLDGLKRQYDD-----RLVMVIprLKTNNPEQIE 314
Cdd:TIGR02917 751 ntaeavKTLEAWLKTHP----NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNavvlnNLAWLY--LELKDPRALE 824
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2485371352 315 KMLRQqIKAVGDRPLLWSTLGQSLMKHGEWQEASLAFRAALKQRPDA 361
Cdd:TIGR02917 825 YAERA-LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
82-382 |
8.07e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 38.53 E-value: 8.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 82 RRARKQ---TEQALLKLAE-----GDYQQVEKLMS-KNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERASELSPKDP 152
Cdd:TIGR02917 80 RKALSLgypKNQVLPLLARayllqGKFQQVLDELPgKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 153 iPVEITRVRLQLARNENHAARHGIDRLLEVSPRHPEVLRLAEQAYIRTGAWGSLLDIIPSMAKAdvgDDEHRDELQRLAW 232
Cdd:TIGR02917 160 -YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL---RPNNIAVLLALAT 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 233 IGL----MDQARADLgsDGLKTWWKNQSRKTRQQVPLQVAMAEH---------------------------LIECDDHDT 281
Cdd:TIGR02917 236 ILIeageFEEAEKHA--DALLKKAPNSPLAHYLKALVDFQKKNYedaretlqdalksapeylpalllagasEYQLGNLEQ 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 282 AQEILLDGLKRQYDD---RLVMVIPRLKTNNPEQIEKMLRQQIKAVGDRPLLWSTLGQSLMKHGEWQEASLAFRAALKQR 358
Cdd:TIGR02917 314 AYQYLNQILKYAPNShqaRRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393
|
330 340
....*....|....*....|....*
gi 2485371352 359 PD-AFDYAWLADSLDKQHKPEEAAA 382
Cdd:TIGR02917 394 PEnAAARTQLGISKLSQGDPSEAIA 418
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
305-390 |
8.42e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 36.86 E-value: 8.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 305 LKTNNPEQIEKMLRQQIKAVGDRPLLWSTLGQSLMKHGEWQEASLAFRAALKQRP-DAFDYAWLADSLDKQHKPEEAAAM 383
Cdd:COG5010 65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPdNPNAYSNLAALLLSLGQDDEAKAA 144
|
....*..
gi 2485371352 384 RRDGLLL 390
Cdd:COG5010 145 LQRALGT 151
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
121-390 |
8.92e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 38.30 E-value: 8.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 121 YLLAAEAAQQRGDEARANQHLERASELSPKDPIPVEITRVRLQLARNENHAARHgiDRLLEVSPRHPEVLRLAEQAYIRT 200
Cdd:COG3899 708 LLRAARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRF--EEAEALLERALAARALAALAALRH 785
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 201 GAWGSLLDIIPSMAKADVGDDEHRDELQRLAW-----IGLMDQARADLGSDGLKTWWKNQSRKTRQqvPLQVAMAEHLIE 275
Cdd:COG3899 786 GNPPASARAYANLGLLLLGDYEEAYEFGELALalaerLGDRRLEARALFNLGFILHWLGPLREALE--LLREALEAGLET 863
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485371352 276 CDDHDTAQEILLDGLKRQYDDRLVMVIPRLKTNNPEQIEKMLRQQIKAVGDRPLLWSTLGQSLMKHGEWQEASLAFRAAL 355
Cdd:COG3899 864 GDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAA 943
|
250 260 270
....*....|....*....|....*....|....*
gi 2485371352 356 KQRPDAFDYAWLADSLDKQHKPEEAAAMRRDGLLL 390
Cdd:COG3899 944 ALAAAAAAAALAAALALAAAAAAAAAAALAAAAAA 978
|
|
| |
