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Conserved domains on  [gi|2499364362|gb|WGT45724|]
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competence protein ComS [Bacillus subtilis subsp. subtilis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ComS super family cl38846
Bacillus competence protein S; ComS is crucial for competence development as it prevents ...
 1-44 3.81e-26

Bacillus competence protein S; ComS is crucial for competence development as it prevents proteolytic degradation of ComK, the key transcriptional activator of all genes required for the uptake and integration of DNA. This family includes members of the Bacillus comS proteins such as Swiss:P80355.


The actual alignment was detected with superfamily member pfam17584:

Pssm-ID: 340299  Cd Length: 44  Bit Score: 89.04  E-value: 3.81e-26
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 2499364362  1 MNRSGKHLISSIILYPRPSGECISSISLDKQTQATTSPLYFCWR 44
Cdd:pfam17584  1 MNRSGKHLISSIILYPRPSGECISSISLDKQTQATTSPLYFCWR 44
 
Name Accession Description Interval E-value
ComS pfam17584
Bacillus competence protein S; ComS is crucial for competence development as it prevents ...
 1-44 3.81e-26

Bacillus competence protein S; ComS is crucial for competence development as it prevents proteolytic degradation of ComK, the key transcriptional activator of all genes required for the uptake and integration of DNA. This family includes members of the Bacillus comS proteins such as Swiss:P80355.


Pssm-ID: 340299  Cd Length: 44  Bit Score: 89.04  E-value: 3.81e-26
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 2499364362  1 MNRSGKHLISSIILYPRPSGECISSISLDKQTQATTSPLYFCWR 44
Cdd:pfam17584  1 MNRSGKHLISSIILYPRPSGECISSISLDKQTQATTSPLYFCWR 44
PHA03271 PHA03271
envelope glycoprotein C; Provisional
 15-46 4.49e-03

envelope glycoprotein C; Provisional


Pssm-ID: 223030 [Multi-domain]  Cd Length: 490  Bit Score: 32.29  E-value: 4.49e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2499364362  15 YPRPSgECISSISLDKQTQATTSPL-----YFCWREK 46
Cdd:PHA03271  167 YPRPS-ELISSIRRDPQGTFWTSPSphgnkYFIWINK 202
 
Name Accession Description Interval E-value
ComS pfam17584
Bacillus competence protein S; ComS is crucial for competence development as it prevents ...
 1-44 3.81e-26

Bacillus competence protein S; ComS is crucial for competence development as it prevents proteolytic degradation of ComK, the key transcriptional activator of all genes required for the uptake and integration of DNA. This family includes members of the Bacillus comS proteins such as Swiss:P80355.


Pssm-ID: 340299  Cd Length: 44  Bit Score: 89.04  E-value: 3.81e-26
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 2499364362  1 MNRSGKHLISSIILYPRPSGECISSISLDKQTQATTSPLYFCWR 44
Cdd:pfam17584  1 MNRSGKHLISSIILYPRPSGECISSISLDKQTQATTSPLYFCWR 44
PHA03271 PHA03271
envelope glycoprotein C; Provisional
 15-46 4.49e-03

envelope glycoprotein C; Provisional


Pssm-ID: 223030 [Multi-domain]  Cd Length: 490  Bit Score: 32.29  E-value: 4.49e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2499364362  15 YPRPSgECISSISLDKQTQATTSPL-----YFCWREK 46
Cdd:PHA03271  167 YPRPS-ELISSIRRDPQGTFWTSPSphgnkYFIWINK 202
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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