|
Name |
Accession |
Description |
Interval |
E-value |
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
132-404 |
1.79e-26 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 108.96 E-value: 1.79e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 132 TGNLGKTYTQSPVLGTNGVIYLASYDKKIYFIDKETGEILTTVPLSGGP-SSETVIGSDGTLYFSTLDNYVHAIkptSKS 210
Cdd:cd10276 22 VGNGGMAGIDLTPVVAGDMVYAADANGQVSAFNATTGKIIWETSLSGKGfLGGTPAVGNGKIFVGTESGYLYAL---DAK 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 211 TWTERWKLKTNGVVSSVPVLAKNGTVYVGTYNYVFYAINSGTGQVKWSRTTSNA----FKGYPVIDKDGNIYAGNQDGQL 286
Cdd:cd10276 99 DGSELWRTEVSDSQLLSPPTYADGKIYVGTGDGRLYYCNAETGKVVWNRTSTAPelslRGGAAPVGAYDVVFVGDGNGTV 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 287 YA-YTSTGSLKWTF---------PLNGFSSSSPA-IDHNGNIYIGSGSGELFSI-SKNGDMNWS-FYTDGpvrTAPLIDA 353
Cdd:cd10276 179 VAlNTGTGVDIWEFsvseprgrtELPRMIDSSVTyVVVGGYLYSTSYQGYLVALdFESGQFLWSrKASGG---TSTSTDA 255
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2508160882 354 KGTVYFGSDDMKVYAADAN-GNELWSY-QTDSNVVSSPQLAEDGTLYIGSYTK 404
Cdd:cd10276 256 NGRVYVGDGEGSLYCLDAStGDELWSQtVLLGRVLSSPAIYVGVYIYVTDNAE 308
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
82-368 |
4.55e-22 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 96.63 E-value: 4.55e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 82 TDGTLKWQNDIRTTPQNGAGAVIdGDGTVYLHSRDGEMKAFNP-DGSVKWVTgNLGKTYTQSPVLGTNGVIYLASYDKKI 160
Cdd:cd10276 56 TTGKIIWETSLSGKGFLGGTPAV-GNGKIFVGTESGYLYALDAkDGSELWRT-EVSDSQLLSPPTYADGKIYVGTGDGRL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 161 YFIDKETGEIL----TTVPLSGGPSSETVIGSDGTLYFstLDNYVHAIKPTsKSTWTERWKLKT---------NGVV-SS 226
Cdd:cd10276 134 YYCNAETGKVVwnrtSTAPELSLRGGAAPVGAYDVVFV--GDGNGTVVALN-TGTGVDIWEFSVseprgrtelPRMIdSS 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 227 VPVLAKNGTVYVGTYNYVFYAINSGTGQVKWSRTTSnAFKGYPVIDKdGNIYAGNQDGQLYAYT-STGSLKWTFP-LNGF 304
Cdd:cd10276 211 VTYVVVGGYLYSTSYQGYLVALDFESGQFLWSRKAS-GGTSTSTDAN-GRVYVGDGEGSLYCLDaSTGDELWSQTvLLGR 288
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2508160882 305 SSSSPAIDHNGNIYIGSG-SGELFSISKNGDMNWSFYTDGPV---RTAPLIdAKGTVYFGSDDMKVYA 368
Cdd:cd10276 289 VLSSPAIYVGVYIYVTDNaEGYLYCLKDNDGLTVARVEVDYSqyiLQGPAV-SDGWLYYGTDDGYLYA 355
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
98-401 |
3.43e-21 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 93.94 E-value: 3.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 98 NGAGAVIDGDgtVYLHSRDGEMKAFNPD-GSVKWVTgNLGKTYTQS--PVLGtNGVIYLASYDKKIYFIDKETGEILTTV 174
Cdd:cd10276 31 DLTPVVAGDM--VYAADANGQVSAFNATtGKIIWET-SLSGKGFLGgtPAVG-NGKIFVGTESGYLYALDAKDGSELWRT 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 175 PLSGGPSSETVIGSDGTLYFSTLDNYVHAIKPTSKSTWTERWKLKTNGVVSSV-PVLAKNGTVYVGTYNYVFYAINSGTG 253
Cdd:cd10276 107 EVSDSQLLSPPTYADGKIYVGTGDGRLYYCNAETGKVVWNRTSTAPELSLRGGaAPVGAYDVVFVGDGNGTVVALNTGTG 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 254 QVKWSRTTSNAFkGYPVIDKD-----------GNIYAGNQDGQLYAYTS-TGSLKWTFPLNGFSSSSpaIDHNGNIYIGS 321
Cdd:cd10276 187 VDIWEFSVSEPR-GRTELPRMidssvtyvvvgGYLYSTSYQGYLVALDFeSGQFLWSRKASGGTSTS--TDANGRVYVGD 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 322 GSGELFSI-SKNGDMNWSFYTDGP-VRTAPLIDAKGTVYFG-SDDMKVYAADANGNELWSYQ--TDSNVVSSPQLAEDGT 396
Cdd:cd10276 264 GEGSLYCLdASTGDELWSQTVLLGrVLSSPAIYVGVYIYVTdNAEGYLYCLKDNDGLTVARVevDYSQYILQGPAVSDGW 343
|
....*
gi 2508160882 397 LYIGS 401
Cdd:cd10276 344 LYYGT 348
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
139-378 |
1.72e-17 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 83.44 E-value: 1.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 139 YTQSPVLGtNGVIYLASYDKKIYFIDKETGEIL----TTVPLSGGPSSetvigSDGTLYFSTLDNYVHAIkptSKSTWTE 214
Cdd:TIGR03300 57 LRLQPAVA-GGKVYAADADGTVAALDAETGKRLwrvdLDERLSGGVGA-----DGGLVFVGTEKGEVIAL---DAEDGKE 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 215 RWKLKTNGVVSSVPVLAkNGTVYVGTYNYVFYAINSGTGQVKWS----------RTTSNafkgyPVIdKDGNIYAGNQDG 284
Cdd:TIGR03300 128 LWRAKLSSEVLSPPLVA-NGLVVVRTNDGRLTALDAATGERLWTysrvtppltlRGSAS-----PVI-ADGGVLVGFAGG 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 285 QLYAYT-STGSLKWTFPL---NGFS--------SSSPAIDhNGNIYIGSGSGELFSIS-KNGDMNWSfyTDGPVRTAPLI 351
Cdd:TIGR03300 201 KLVALDlQTGQPLWEQRValpKGRTelerlvdvDGDPVVD-GGQVYAVSYQGRVAALDlRSGRVLWK--RDASSYQGPAV 277
|
250 260
....*....|....*....|....*...
gi 2508160882 352 DAkGTVYFGSDDMKVYAADA-NGNELWS 378
Cdd:TIGR03300 278 DD-NRLYVTDADGVVVALDRrSGSELWK 304
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
115-338 |
2.33e-17 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 80.52 E-value: 2.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 115 RDGEMKAFNP-DGSVKWVTGNlgKTYTQSPVLGTNGVIYLASYDKKIYFIDKETGEILTTVPLSgGPSSETVIGSDGTLY 193
Cdd:pfam13360 1 ADGVVTALDAaTGAELWRVDL--ETGLGGGVAVDGGRLFVATGGGQLVALDAATGKLLWRQTLS-GEVLGAPLVAGGRVF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 194 FSTLDNYVHAIKP-TSKSTWTERWKLKTNGVVSSVPVLAKNGTVYVGTYNYVFYAINSGTGQVKWSRTTSNAFK------ 266
Cdd:pfam13360 78 VVAGDGSLIALDAaDGRRLWSYQRSGEPLALRSSGSPAVVGDTVVAGFSSGKLVALDPATGKVRWEAPLAAPRGtneler 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2508160882 267 -----GYPVIDkDGNIYAGNQDGQLYAY-TSTGSLKWTFPLNGFssSSPAIDHnGNIYIGSGSGELFSIS-KNGDMNWS 338
Cdd:pfam13360 158 lvditGTPVVA-GGRVFASAYQGRLVAFdAATGRRLWTREISGP--NGPILDG-DLLYVVSDDGELYALDrATGAVVWK 232
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
198-408 |
3.37e-17 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 80.14 E-value: 3.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 198 DNYVHAIKPTSKST-WTERWKLKTNGvvssvPVLAKNGTVYVGTYNYVFYAINSGTGQVKWSRTTSNAFKGYPVIDkDGN 276
Cdd:pfam13360 2 DGVVTALDAATGAElWRVDLETGLGG-----GVAVDGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVLGAPLVA-GGR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 277 IYAGNQDGQLYAY-TSTGSLKWTF-----PLNGFSSSSPAIDhNGNIYIGSGSGELFSIS-KNGDMNWSFYTDGPVRT-- 347
Cdd:pfam13360 76 VFVVAGDGSLIALdAADGRRLWSYqrsgePLALRSSGSPAVV-GDTVVAGFSSGKLVALDpATGKVRWEAPLAAPRGTne 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2508160882 348 --------APLIDAKGTVYFGSDDMKVYAADA-NGNELWsyqtdSNVVSSP--QLAEDGTLYIGS-YTKLMAF 408
Cdd:pfam13360 155 lerlvditGTPVVAGGRVFASAYQGRLVAFDAaTGRRLW-----TREISGPngPILDGDLLYVVSdDGELYAL 222
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
106-338 |
6.03e-17 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 81.90 E-value: 6.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 106 GDGTVYLHSRDGEMKAFNPD-GSVKWvTGNLGKTYTQSPVLGtNGVIYLASYDKKIYFIDKETGEILTTVPLSGGPSSET 184
Cdd:TIGR03300 64 AGGKVYAADADGTVAALDAEtGKRLW-RVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 185 VIgSDGTLYFSTLDNYVHAIKPTSKStwtERWKLKTNGVV-----SSVPVLAkNGTVYVGTYNYVFYAINSGTGQVKWSR 259
Cdd:TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGE---RLWTYSRVTPPltlrgSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQ 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 260 TTSNA-----------FKGYPVIDkDGNIYAGNQDGQLYAYT-STGSLKWTFPLNgfSSSSPAIDHNgNIYIGSGSGELF 327
Cdd:TIGR03300 217 RVALPkgrtelerlvdVDGDPVVD-GGQVYAVSYQGRVAALDlRSGRVLWKRDAS--SYQGPAVDDN-RLYVTDADGVVV 292
|
250
....*....|..
gi 2508160882 328 SISK-NGDMNWS 338
Cdd:TIGR03300 293 ALDRrSGSELWK 304
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
107-399 |
3.58e-15 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 76.39 E-value: 3.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 107 DGTVYLHSRDGEMKAFNPD-GSVKWVTgNLGKTYTQSPVLGtNGVIYLASYDKKIYFIDKETGEILTTVPLSGGPSSETV 185
Cdd:COG1520 57 GDRVYAADADGRVAALDAAtGKELWRV-DLGEPLSGGVGAD-GGLVVVGTEDGEVIALDADDGEELWRARLSSEVLAAPA 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 186 IGsDGTLYFSTLDNYVHAIkptSKSTWTERWKLKTNGVV-----SSVPVLAkNGTVYVGTYNYVFYAINSGTGQVKWSRT 260
Cdd:COG1520 135 VA-GGRVVVRTGDGRVYAL---DAATGERLWSYQRPVPAltlrgTSSPVIV-GGAVLVGFANGKLVALDLANGQPLWEQR 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 261 TSNAfKGY------------PVIDkDGNIYAGNQDGQLYAY-TSTGSLKWTFPLNgfSSSSPAIDhNGNIYIGSGSGELF 327
Cdd:COG1520 210 VAQP-RGRtelerlvdvdgtPVVD-GGVVYAVAYQGRLAALdLRSGRVLWSRDLS--SYTGLAVD-GNNLYVTDDDGRVW 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 328 SISK-NGDMNWSfyTDGPVR---TAPLI--------DAKGTVYFGSDDmkvyaadaNGNELWSYQTDSNVVSSPQLAEDG 395
Cdd:COG1520 285 ALDRrNGAELWK--QDALLYrglTAPVVlgdyvvvgDFEGYLHWLSRD--------DGSLVARLRVDGSGIRAAPVVVGD 354
|
....
gi 2508160882 396 TLYI 399
Cdd:COG1520 355 TLYV 358
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
28-368 |
9.94e-15 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 74.85 E-value: 9.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 28 VPAAKVLQPTAAYAAETVFSQNNGASGflpGRYDVQaMAPAmfnWSRESRFAGNTDGTLK----------WQNDIRTTPq 97
Cdd:COG1520 18 PPPAPLPEFEPSVKVKQLWSASVGDGV---GKGYSR-LAPA---VAGDRVYAADADGRVAaldaatgkelWRVDLGEPL- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 98 ngAGAVIDGDGTVYLHSRDGEMKAFNP-DGSVKWvtgnlgKTYTQSPVLGT----NGVIYLASYDKKIYFIDKETGEIL- 171
Cdd:COG1520 90 --SGGVGADGGLVVVGTEDGEVIALDAdDGEELW------RARLSSEVLAApavaGGRVVVRTGDGRVYALDAATGERLw 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 172 ----TTVPLS-GGPSSETVIGsdGTLYFSTLDNYVHAIKPtskSTWTERWKL---KTNGV--------VSSVPVLAkNGT 235
Cdd:COG1520 162 syqrPVPALTlRGTSSPVIVG--GAVLVGFANGKLVALDL---ANGQPLWEQrvaQPRGRtelerlvdVDGTPVVD-GGV 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 236 VYVGTYNYVFYAINSGTGQVKWSRTTSnAFKGyPVIDkDGNIYAGNQDGQLYAY-TSTGSLKWTFP-LNGFSSSSPAIdH 313
Cdd:COG1520 236 VYAVAYQGRLAALDLRSGRVLWSRDLS-SYTG-LAVD-GNNLYVTDDDGRVWALdRRNGAELWKQDaLLYRGLTAPVV-L 311
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2508160882 314 NGNIYIGSGSGELFSISK-NGdmnwSFY----TDG-PVRTAPLIdAKGTVYFGSDDMKVYA 368
Cdd:COG1520 312 GDYVVVGDFEGYLHWLSRdDG----SLVarlrVDGsGIRAAPVV-VGDTLYVQTRDGTLAA 367
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
139-378 |
7.99e-13 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 69.07 E-value: 7.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 139 YTQSPVLgTNGVIYLASYDKKIYFIDKETGEIL----TTVPLSGGPssetviGSDGtlyfstldnyvhaikptskstwte 214
Cdd:COG1520 49 SRLAPAV-AGDRVYAADADGRVAALDAATGKELwrvdLGEPLSGGV------GADG------------------------ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 215 rwklktngvvssvpvlaknGTVYVGTYNYVFYAINSGTGQVKWSRTTSNAFKGYPVIDkDGNIYAGNQDGQLYAY-TSTG 293
Cdd:COG1520 98 -------------------GLVVVGTEDGEVIALDADDGEELWRARLSSEVLAAPAVA-GGRVVVRTGDGRVYALdAATG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 294 SLKWTF-----PLNGFSSSSPAIdHNGNIYIGSGSGELFSIS-KNGDMNWsfytDGPV-----RT----------APLID 352
Cdd:COG1520 158 ERLWSYqrpvpALTLRGTSSPVI-VGGAVLVGFANGKLVALDlANGQPLW----EQRVaqprgRTelerlvdvdgTPVVD 232
|
250 260
....*....|....*....|....*..
gi 2508160882 353 AkGTVYFGSDDMKVYAADA-NGNELWS 378
Cdd:COG1520 233 G-GVVYAVAYQGRLAALDLrSGRVLWS 258
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
100-368 |
4.16e-12 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 67.26 E-value: 4.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 100 AGAVIDGdGTVYLHSRDGEMKAFNP-DGSVKW---VTGNlgktyTQSPVLGTNGVIYLASYDKKIYFIDKETGEILTTVP 175
Cdd:TIGR03300 99 GGVGADG-GLVFVGTEKGEVIALDAeDGKELWrakLSSE-----VLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYS 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 176 LSGGP----SSETVIGSDGTLYFSTLDNYVHAIKPTSKST-WTERWKLKTnGV--------VSSVPVLAkNGTVYVGTYN 242
Cdd:TIGR03300 173 RVTPPltlrGSASPVIADGGVLVGFAGGKLVALDLQTGQPlWEQRVALPK-GRtelerlvdVDGDPVVD-GGQVYAVSYQ 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 243 YVFYAINSGTGQVKWSRTTSnAFKGyPVIDkDGNIYAGNQDGQLYAY-TSTGSLKWTFP-LNGFSSSSPAIdHNGNIYIG 320
Cdd:TIGR03300 251 GRVAALDLRSGRVLWKRDAS-SYQG-PAVD-DNRLYVTDADGVVVALdRRSGSELWKNDeLKYRQLTAPAV-LGGYLVVG 326
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2508160882 321 SGSGELFSISK-NGDMNWSFYTDGPVRTAPLIDAKGTVYFGSDDMKVYA 368
Cdd:TIGR03300 327 DFEGYLHWLDRdDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYA 375
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
83-404 |
9.31e-12 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 66.48 E-value: 9.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 83 DGTLKWQNDIRTTPQNGA--------GAVIDGdGTVYLHSRDGEMKAFNP-DGSVKWVTGN----LGKTYTQSPVLGTNG 149
Cdd:cd00216 50 DGKEIWSYDPALKDGWFEaccdlvnrGVAVWG-GKVYIGVLDGRVYALNAeTGKVAWKVKNadvlGGYTATSAPVVVDGL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 150 VIYLASYDK-----KIYFIDKETGEILTTVPLSGGPSSETVIGSDGTLYFSTLDNYVHAIKPTSKSTWTE-RWKLKTNGV 223
Cdd:cd00216 129 VIIGSSGDEfgvrgYLTAYDVATGEEKWRFYLVMPDPNLLPGKDSTVTDRNTPTGDEHTWTSGGGTGWSSaAYDAELNLI 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 224 VSSVPVLA-----KNGTVYVGTYNYVFYAINSGTGQVKWSRTTSNA-----------------FKGYPVidkdGNIYAGN 281
Cdd:cd00216 209 YVGGGNPTpwnwgGNRTPGDNLYTSSIVAVNADTGEMKWQYQTTPHdawdydgdntpvladikVKGKKV----KVLFAPA 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 282 QDGQLYAYT-STGSLKWTFPLNGFSssspaIDHNGNIYIGSGSGELFSIS-KNGDMNWSFYTDGPVRTAPLIDAKGTVYF 359
Cdd:cd00216 285 KNGNFYVLDrRNGELVSARPLVPDS-----YDPDRELFYVPANGRIMALDpVTGVVVWEKSELHPLLGGPLSTAGNLVFV 359
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 2508160882 360 GSDDMKVYAADA-NGNELWSYQTDSNVVSSPQLAE-DGTLYIGSYTK 404
Cdd:cd00216 360 GTSDGYLKAYNAdTGEKLWQQKVPSGFQAEPVTYEvDGEQYVLIQAG 406
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
184-393 |
1.28e-10 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 62.62 E-value: 1.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 184 TVIGSDGTLYFSTLDNYVHAIKP-TSKSTWTERWKLKTNGVVSSVPVLAKN-----GTVYVGTYNYVFYAINSGTGQVKW 257
Cdd:cd00216 26 TPIVVDGVMYATTSFSRVFALDAdDGKEIWSYDPALKDGWFEACCDLVNRGvavwgGKVYIGVLDGRVYALNAETGKVAW 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 258 SRTTSNAFKGY-----PVIdKDGNIYAGNQD------GQLYAY-TSTGSLKWTFPLNGFSSSSPAIDHNGNIYIGSGSGE 325
Cdd:cd00216 106 KVKNADVLGGYtatsaPVV-VDGLVIIGSSGdefgvrGYLTAYdVATGEEKWRFYLVMPDPNLLPGKDSTVTDRNTPTGD 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 326 LFSISKNGDMNWSFYTDGPvrtaplidAKGTVYFGSDD------------------MKVYAADANGNEL-WSYQT----- 381
Cdd:cd00216 185 EHTWTSGGGTGWSSAAYDA--------ELNLIYVGGGNptpwnwggnrtpgdnlytSSIVAVNADTGEMkWQYQTtphda 256
|
250
....*....|...
gi 2508160882 382 -DSNVVSSPQLAE 393
Cdd:cd00216 257 wDYDGDNTPVLAD 269
|
|
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
151-408 |
1.90e-10 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 62.70 E-value: 1.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 151 IYLASYDKKIYFIDKETGEI--LTTVPLSGGPSSETVIGSDGTLYFSTLDNYVHAIKPTSKS--TWTERWKLKTNGVVSS 226
Cdd:COG3292 284 LWIGTYGGGLFRLDPKTGKFkrYNPNGLPSNSVYSILEDSDGNLWIGTSGGGLYRYDPKTGKftKFSEDNGLSNNFIRSI 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 227 VPvlAKNGTVYVGTYNYVF-YAINSGTGQVKWSRTTSNAFKGYPVI----DKDGNIYAGNQDGQLYAYT-STGSLKWTFP 300
Cdd:COG3292 364 LE--DSDGNLWVGTNGGLYrLDPKTGKFTNFTHDPDKNGLSSNYINsifeDSDGRLWIGTDGGGLYRYDpKTGKFKHFTT 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 301 LNGFSS---SSPAIDHNGNIYIGSGSGELFSISKNGDMNWSFYTDGPVRTAPLIDAKGTVYFGSDDMKVYAADANGNELW 377
Cdd:COG3292 442 KDGLPSntiYSILEDDNGNLWNFNSASNLGLLSLLGGLLGGLNLGNAIKLPLSNLGLLLTLLLLGINLSLVRSLISLLTL 521
|
250 260 270
....*....|....*....|....*....|.
gi 2508160882 378 SYQTDSNVVSSPQLAEDGTLYIGSYTKLMAF 408
Cdd:COG3292 522 LLLALLLLLSLLLLLLLLLLLLLLLLLLLLL 552
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
83-290 |
7.93e-10 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 59.83 E-value: 7.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 83 DGTLKWQNDiRTTPQ---NGAGAVIDGDGTVYLHSRDGEMKAFNP-DGSVKW------------------VTGnlgktyt 140
Cdd:COG1520 156 TGERLWSYQ-RPVPAltlRGTSSPVIVGGAVLVGFANGKLVALDLaNGQPLWeqrvaqprgrtelerlvdVDG------- 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 141 qSPVLgTNGVIYLASYDKKIYFIDKETGEILTTVPLSggpSSETVIGSDGTLYFSTLDNYVHAIkptSKSTWTERWK--- 217
Cdd:COG1520 228 -TPVV-DGGVVYAVAYQGRLAALDLRSGRVLWSRDLS---SYTGLAVDGNNLYVTDDDGRVWAL---DRRNGAELWKqda 299
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2508160882 218 LKTNGVvsSVPVLAKNgTVYVGTYN-YVfYAINSGTGQ-VKWSRTTSNAFKGYPVIDKDGnIYAGNQDGQLYAYT 290
Cdd:COG1520 300 LLYRGL--TAPVVLGD-YVVVGDFEgYL-HWLSRDDGSlVARLRVDGSGIRAAPVVVGDT-LYVQTRDGTLAALR 369
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
107-382 |
2.78e-09 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 58.40 E-value: 2.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 107 DGTVYLHSRDGEMKAFNPD-GSVKWVTgNLGktytqspvlgtngviylasyDKKIYFIDKEtgeiltTVPLSGGpssetV 185
Cdd:PRK11138 69 YNKVYAADRAGLVKALDADtGKEIWSV-DLS--------------------EKDGWFSKNK------SALLSGG-----V 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 186 IGSDGTLYFSTLDNYVHAIKptsKSTWTERWKLKTNGVVSSVPVLAkNGTVYVGTYNYVFYAINSGTGQVKWS------- 258
Cdd:PRK11138 117 TVAGGKVYIGSEKGQVYALN---AEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTvnldvps 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 259 ---RTTSNafkgyPVIDKDGNIYAGNqDGQLYAYT-STGSLKWTFPL------NGFS-----SSSPAIDhNGNIYIGSGS 323
Cdd:PRK11138 193 ltlRGESA-----PATAFGGAIVGGD-NGRVSAVLmEQGQLIWQQRIsqptgaTEIDrlvdvDTTPVVV-GGVVYALAYN 265
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2508160882 324 GELFSIS-KNGDMNW----SFYTDgpvrtapLIDAKGTVYFGSDDMKVYAADA-NGNELWSyQTD 382
Cdd:PRK11138 266 GNLVALDlRSGQIVWkreyGSVND-------FAVDGGRIYLVDQNDRVYALDTrGGVELWS-QSD 322
|
|
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
96-405 |
3.00e-09 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 59.23 E-value: 3.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 96 PQNGAGAVI-DGDGTVYLHSRDG-------EMKAFNPDGSVkwvTGNLGKTYTQSPVLGTNGVIYLASyDKKIYFIDKET 167
Cdd:COG3292 34 PQNSVNSIAqDSDGFLWIGTEDGlnrydgyEFKVFRHDPGD---PNSLPSNYIRALLEDSDGRLWIGT-DGGLSRYDPKT 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 168 GEIlTTVPLSGGPSSETV----IGSDGTLYFSTlDNYVHAIKPTSKSTWTERWKLKTNGVVSSVPV-------LAKNGTV 236
Cdd:COG3292 110 DKF-TRYPLDPGLPNNSIrsiaEDSDGNIWVGT-SNGLYRYDPKTGKFKRFTLDGLPSNTITSLAEdadgnlwVDSDGNL 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 237 YVGTYNYVFYAINSGTGQVKW--SRTTSNAFKGYPV----IDKDGNIYAGNQDGQLYAYTSTG----SLKWTFP--LNGF 304
Cdd:COG3292 188 WIGTDGNGLYRLDPNTGKFEHitHDPDPNSLSSNSIyslfEDREGNLWVGTYGGGLNYLDPNNskfkSYRHNDPngLSGN 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 305 SSSSPAIDHNGNIY----IGSGSGELFSISKNGD----MNWSFYTDGPVRTApLIDAKGTVYFGSDDMKVYAADANGNEL 376
Cdd:COG3292 268 SVRSIAEDSDGNLWirlwIGTYGGGLFRLDPKTGkfkrYNPNGLPSNSVYSI-LEDSDGNLWIGTSGGGLYRYDPKTGKF 346
|
330 340 350
....*....|....*....|....*....|...
gi 2508160882 377 WSYQTD----SNVVSSPQLAEDGTLYIGSYTKL 405
Cdd:COG3292 347 TKFSEDnglsNNFIRSILEDSDGNLWVGTNGGL 379
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
83-298 |
3.48e-09 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 56.64 E-value: 3.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 83 DGTLKWQNDIrttPQNGAGAVIDGDGTVYLHSRDGEMKAFNP-DGSVKWVTGNLGktytqsPVLGTNGVIYLASYDKKIY 161
Cdd:pfam13360 52 TGKLLWRQTL---SGEVLGAPLVAGGRVFVVAGDGSLIALDAaDGRRLWSYQRSG------EPLALRSSGSPAVVGDTVV 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 162 FIDkETGEILTTVPLSGGPSSETvigsdgTLYFSTLDNYVHAIkptskstwterwklktnGVVSSVPVLAkNGTVYVGTY 241
Cdd:pfam13360 123 AGF-SSGKLVALDPATGKVRWEA------PLAAPRGTNELERL-----------------VDITGTPVVA-GGRVFASAY 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2508160882 242 NYVFYAINSGTGQVKWSRTTSnAFKGyPVIDkDGNIYAGNQDGQLYAYT-STGSLKWT 298
Cdd:pfam13360 178 QGRLVAFDAATGRRLWTREIS-GPNG-PILD-GDLLYVVSDDGELYALDrATGAVVWK 232
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
82-290 |
4.27e-09 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 57.73 E-value: 4.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 82 TDGTLKWQNDiRTTPQN---GAGAVIDGDGTVYLHSRDGEMKAFNP-DGSVKW---VTGNLGKT-------YTQSPVLGt 147
Cdd:cd10276 139 ETGKVVWNRT-STAPELslrGGAAPVGAYDVVFVGDGNGTVVALNTgTGVDIWefsVSEPRGRTelprmidSSVTYVVV- 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 148 NGVIYLASYDKKIYFIDKETGEILTTVPLSGGPSseTVIGSDGTLYFSTLDNYVHAIKPtskSTWTERWKL-KTNGVVSS 226
Cdd:cd10276 217 GGYLYSTSYQGYLVALDFESGQFLWSRKASGGTS--TSTDANGRVYVGDGEGSLYCLDA---STGDELWSQtVLLGRVLS 291
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2508160882 227 VPVLAKNGTVYVGTYNY-VFYAINSGTGQ----VKWSRttSNAFKGYPVIDkDGNIYAGNQDGQLYAYT 290
Cdd:cd10276 292 SPAIYVGVYIYVTDNAEgYLYCLKDNDGLtvarVEVDY--SQYILQGPAVS-DGWLYYGTDDGYLYALT 357
|
|
| YvrE |
COG3386 |
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ... |
99-329 |
7.17e-08 |
|
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 442613 [Multi-domain] Cd Length: 266 Bit Score: 53.36 E-value: 7.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 99 GAGAVIDGDGTVYL-HSRDGEMKAFNPDGSvKWVTGNLGKTYTQSPVLGTNGVIYLASYDKKIYFIDKETGEILTTVPLS 177
Cdd:COG3386 10 GEGPVWDPDGRLYWvDIPGGRIHRYDPDGG-AVEVFAEPSGRPNGLAFDPDGRLLVADHGRGLVRFDPADGEVTVLADEY 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 178 GGPSS---ETVIGSDGTLYFSTLDNY-----VHAIKPTSKSTwteRWK---LKTNGVVSSvpvlAKNGTVYVG-TYNYVF 245
Cdd:COG3386 89 GKPLNrpnDGVVDPDGRLYFTDMGEYlptgaLYRVDPDGSLR---VLAdglTFPNGIAFS----PDGRTLYVAdTGAGRI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 246 YAIN-SGTGQVKWSRT--TSNAFKGYP---VIDKDGNIY-AGNQDGQLYAYTSTGSLKWTFPLNGFSSSSPAID-HNGN- 316
Cdd:COG3386 162 YRFDlDADGTLGNRRVfaDLPDGPGGPdglAVDADGNLWvALWGGGGVVRFDPDGELLGRIELPERRPTNVAFGgPDLRt 241
|
250
....*....|....*...
gi 2508160882 317 IYIGSG-----SGELFSI 329
Cdd:COG3386 242 LYVTTArslplAGALFRV 259
|
|
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
90-388 |
9.88e-08 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 54.22 E-value: 9.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 90 NDIRTTPQNGAGA--VIDGDGTVYLHSRDGEMKAFNPDGSVKWVTGNLGKTYTQSPVLGTNGVIYLASYDKKIYFIDKET 167
Cdd:COG3292 124 NSIRSIAEDSDGNiwVGTSNGLYRYDPKTGKFKRFTLDGLPSNTITSLAEDADGNLWVDSDGNLWIGTDGNGLYRLDPNT 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 168 GEI--LTTVPLSGGPSSETV----IGSDGTLYFSTL--------------------------DNYVHAIKPTSKSTW--- 212
Cdd:COG3292 204 GKFehITHDPDPNSLSSNSIyslfEDREGNLWVGTYggglnyldpnnskfksyrhndpnglsGNSVRSIAEDSDGNLwir 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 213 ----------------TERWKLKTNGVVSSVPVLA----KNGTVYVGTYNYVFYAINSGTGQVKWSRTTSNAFKGYP--- 269
Cdd:COG3292 284 lwigtyggglfrldpkTGKFKRYNPNGLPSNSVYSiledSDGNLWIGTSGGGLYRYDPKTGKFTKFSEDNGLSNNFIrsi 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 270 VIDKDGNIYAGNQDGqLYAYTSTGSLKWTFPLNGFSSSSP-------AIDHNGNIYIGSGSGELFSISKNGDMNWSFYT- 341
Cdd:COG3292 364 LEDSDGNLWVGTNGG-LYRLDPKTGKFTNFTHDPDKNGLSsnyinsiFEDSDGRLWIGTDGGGLYRYDPKTGKFKHFTTk 442
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 2508160882 342 DG-PVRT--APLIDAKGTVYFGSDDMKVYAADANGNELWSYQTDSNVVSS 388
Cdd:COG3292 443 DGlPSNTiySILEDDNGNLWNFNSASNLGLLSLLGGLLGGLNLGNAIKLP 492
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
143-386 |
1.42e-07 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 52.33 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 143 PVLGTNGVIYLASYDK-KIYFIDKETGEILTTVPLSGGPSSETVIGSDGTLYFS-TLDNYVHAIKPTSKStwTERWKLKT 220
Cdd:COG4257 22 VAVDPDGAVWFTDQGGgRIGRLDPATGEFTEYPLGGGSGPHGIAVDPDGNLWFTdNGNNRIGRIDPKTGE--ITTFALPG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 221 NGVVSSVPVLAKNGTVYV-GTYNYVFYAINSGTGQVK-WSRTTSNAFKGYPVIDKDGNIY-AGNQDGQLYAY-TSTGSLK 296
Cdd:COG4257 100 GGSNPHGIAFDPDGNLWFtDQGGNRIGRLDPATGEVTeFPLPTGGAGPYGIAVDPDGNLWvTDFGANAIGRIdPDTGTLT 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 297 -WTFPLNGFSSSSPAIDHNGNIYIG-SGSGELFSISKngdmnwsfyTDGPVRTAPLIDAKGT---VYFGSDDmKVYAADA 371
Cdd:COG4257 180 eYALPTPGAGPRGLAVDPDGNLWVAdTGSGRIGRFDP---------KTGTVTEYPLPGGGARpygVAVDGDG-RVWFAES 249
|
250
....*....|....*
gi 2508160882 372 NGNELWSYQTDSNVV 386
Cdd:COG4257 250 GANRIVRFDPDTELT 264
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
83-290 |
2.44e-07 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 52.24 E-value: 2.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 83 DGTLKWQNDiRTTPQ---NGAGAVIDGDGTVYLHSRDGEMKAFNP-DGSVKW---VTGNLGKT-------YTQSPVLgTN 148
Cdd:TIGR03300 164 TGERLWTYS-RVTPPltlRGSASPVIADGGVLVGFAGGKLVALDLqTGQPLWeqrVALPKGRTelerlvdVDGDPVV-DG 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 149 GVIYLASYDKKIYFIDKETGEILTTVPLSggpSSETVIGSDGTLYFSTLDNYVHAIKPTSKStwtERWK---LKtNGVVS 225
Cdd:TIGR03300 242 GQVYAVSYQGRVAALDLRSGRVLWKRDAS---SYQGPAVDDNRLYVTDADGVVVALDRRSGS---ELWKndeLK-YRQLT 314
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2508160882 226 SvPVLAKNGtVYVGTYNYVFYAINSGTGQ-VKWSRTTSNAFKGYPVIDKDGnIYAGNQDGQLYAYT 290
Cdd:TIGR03300 315 A-PAVLGGY-LVVGDFEGYLHWLDRDDGSfVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAFR 377
|
|
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
105-322 |
1.92e-06 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 49.99 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 105 DGDGTVYLHSRDGEMKAFNPDGsvkwvtgnLGKTYTQSPVLGTNGVIYLASYDKKIYFIDKETGEIlTTVPLSGGPSSET 184
Cdd:COG3292 289 YGGGLFRLDPKTGKFKRYNPNG--------LPSNSVYSILEDSDGNLWIGTSGGGLYRYDPKTGKF-TKFSEDNGLSNNF 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 185 V----IGSDGTLYFSTlDNYVHAIKPTSKSTWTERWKLKTNGVvSSVPVLA----KNGTVYVGTYNYVFYAINSGTGQVK 256
Cdd:COG3292 360 IrsilEDSDGNLWVGT-NGGLYRLDPKTGKFTNFTHDPDKNGL-SSNYINSifedSDGRLWIGTDGGGLYRYDPKTGKFK 437
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 257 WSRTT----SNAFKGyPVIDKDGNIYAGNQDGQLYAYTSTGSLKWTFPLNGFSSSSPAIDHNGNIYIGSG 322
Cdd:COG3292 438 HFTTKdglpSNTIYS-ILEDDNGNLWNFNSASNLGLLSLLGGLLGGLNLGNAIKLPLSNLGLLLTLLLLG 506
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
228-260 |
6.68e-06 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 42.52 E-value: 6.68e-06
10 20 30
....*....|....*....|....*....|...
gi 2508160882 228 PVLAKNGTVYVGTYNYVFYAINSGTGQVKWSRT 260
Cdd:smart00564 1 PVVLSDGTVYVGSTDGTLYALDAKTGEILWTYK 33
|
|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
355-389 |
7.41e-06 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 42.56 E-value: 7.41e-06
10 20 30
....*....|....*....|....*....|....*.
gi 2508160882 355 GTVYFGSDDMKVYAADA-NGNELWSYQTDSNVVSSP 389
Cdd:pfam01011 1 GTVYLGSDDGYLYALDAeTGKVLWSFKTGGAVLSSP 36
|
|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
234-269 |
2.76e-05 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 41.02 E-value: 2.76e-05
10 20 30
....*....|....*....|....*....|....*.
gi 2508160882 234 GTVYVGTYNYVFYAINSGTGQVKWSRTTSNAFKGYP 269
Cdd:pfam01011 1 GTVYLGSDDGYLYALDAETGKVLWSFKTGGAVLSSP 36
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
121-318 |
3.27e-05 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 45.68 E-value: 3.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 121 AFNPD-GSVKW---VTGNLGKTYT--QSPVL-------GTNGVIYLASYDKKIYFIDKETGEILTTVPLsgGPSSetvIG 187
Cdd:cd00216 237 AVNADtGEMKWqyqTTPHDAWDYDgdNTPVLadikvkgKKVKVLFAPAKNGNFYVLDRRNGELVSARPL--VPDS---YD 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 188 SDGTLYFSTLDNYVHAIKP-TSKSTWTERWKLKTNGVvssvPVLAKNGTVYVGTYNYVFYAINSGTGQVKWSRTTSNAFK 266
Cdd:cd00216 312 PDRELFYVPANGRIMALDPvTGVVVWEKSELHPLLGG----PLSTAGNLVFVGTSDGYLKAYNADTGEKLWQQKVPSGFQ 387
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2508160882 267 GYPVidkdgniyAGNQDGQLYAYTSTGSLKWTFPLNGFSSSSPAIDHNGNIY 318
Cdd:cd00216 388 AEPV--------TYEVDGEQYVLIQAGGGGAFPLWGGMADLTRGTQMGGTVV 431
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
269-300 |
5.14e-05 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 39.82 E-value: 5.14e-05
10 20 30
....*....|....*....|....*....|...
gi 2508160882 269 PVIDKDGNIYAGNQDGQLYAY-TSTGSLKWTFP 300
Cdd:smart00564 1 PVVLSDGTVYVGSTDGTLYALdAKTGEILWTYK 33
|
|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
275-309 |
1.84e-04 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 38.71 E-value: 1.84e-04
10 20 30
....*....|....*....|....*....|....*.
gi 2508160882 275 GNIYAGNQDGQLYAY-TSTGSLKWTFPLNGFSSSSP 309
Cdd:pfam01011 1 GTVYLGSDDGYLYALdAETGKVLWSFKTGGAVLSSP 36
|
|
| PQQ_ADH_II |
cd10279 |
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of ... |
189-400 |
3.70e-04 |
|
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of monomeric and soluble type II alcohol dehydrogenases utilizes pyrroloquinoline quinone (PQQ) as a cofactor and is related to ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199837 [Multi-domain] Cd Length: 549 Bit Score: 42.63 E-value: 3.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 189 DGTLYFSTLDNYVHAIKP-TSKSTWT------ERWKLKTNGVVSSVPVLAKNGTVYVGTYNYVFYAINSGTGQVKWSRTT 261
Cdd:cd10279 51 DGVMYVSGPWSVVYALDArTGKLLWQydpevdRESGRKACCDVVNRGVAVWDGKVFVGTLDGRLIALDAKTGKEVWSVDT 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 262 snafkgypVIDKDGniyagnqdgqlyaYTSTGSLKWTfplngfsssspaidhNGNIYIGSGSGELFS---IS----KNGD 334
Cdd:cd10279 131 --------IDPRKP-------------YTITGAPRVA---------------KGKVVIGNGGAEFGVrgyVSaydaETGK 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2508160882 335 MNWSFYT--DGPvrtaplidAKGtvyFGSDDMKVYAADANGNELWSYQTDSNV----VSSPQLaedGTLYIG 400
Cdd:cd10279 175 LVWRFYTvpGNP--------AKP---FEHASLEAAAATWWTGEWWRTGGGGTVwdsiTYDPEL---DLLYIG 232
|
|
| Luminal_IRE1_like |
cd09213 |
The Luminal domain, a dimerization domain, of Inositol-requiring protein 1-like proteins; The ... |
104-344 |
6.58e-04 |
|
The Luminal domain, a dimerization domain, of Inositol-requiring protein 1-like proteins; The Luminal domain is a dimerization domain present in Inositol-requiring protein 1 (IRE1), eukaryotic translation Initiation Factor 2-Alpha Kinase 3 (EIF2AK3), and similar proteins. IRE1 and EIF2AK3 are serine/threonine protein kinases (STKs) and are type I transmembrane proteins that are localized in the endoplasmic reticulum (ER). They are kinase receptors that are activated through the release of BiP, a chaperone bound to their luminal domains under unstressed conditions. This results in dimerization through their luminal domains, allowing trans-autophosphorylation of their kinase domains and activation. They play roles in the signaling of the unfolded protein response (UPR), which is activated when protein misfolding is detected in the ER in order to decrease the synthesis of new proteins and increase the capacity of the ER to cope with the stress. IRE1, also called Endoplasmic reticulum (ER)-to-nucleus signaling protein (or ERN), contains an endoribonuclease domain in its cytoplasmic side and acts as an ER stress sensor. It is the oldest and most conserved component of the UPR in eukaryotes. Its activation results in the cleavage of its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans, promoting a splicing event that enables translation into a transcription factor which activates the UPR. EIF2AK3, also called PKR-like Endoplasmic Reticulum Kinase (PERK), phosphorylates the alpha subunit of eIF-2, resulting in the downregulation of protein synthesis. It functions as the central regulator of translational control during the UPR pathway. In addition to the eIF-2 alpha subunit, EIF2AK3 also phosphorylates Nrf2, a leucine zipper transcription factor which regulates cellular redox status and promotes cell survival during the UPR.
Pssm-ID: 188873 [Multi-domain] Cd Length: 312 Bit Score: 41.32 E-value: 6.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 104 IDGDGTVYLHSRDgemkafnpDGSVKWVTGNLGKTYTQSPVLGTN---GVIYLASYDKKIYFIDKETGEILTTVPLSGGP 180
Cdd:cd09213 54 LDGDGNLYQHDKG--------HGSLQRLPLTIEDLVEASPLVSDTnedDVVVVGSKRTSVFALDAKTGKIIKTYRADGLP 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 181 SSETVIGSDGTLYFSTLDNyvhaikptskstwterwklktngvvssvpvlAKNGTVYVGTYNYVFYAINSGTGQVKWSRT 260
Cdd:cd09213 126 STGGSDSDGNSTPGPDELQ-------------------------------EEEELLYIGRTDYVLQAIDPRSGKELWNVT 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 261 -------TSNAFKGYPVIDKDGNI--YAGNQDGQLYAYTS----TGSLKW-----TFPLNGFSSSSPAIDHNGNIYIGSG 322
Cdd:cd09213 175 ygeyealTLDADELGTSSSSSPLSasFRISENEPVPAVYLlglqGGKSLWehlfdSPIVSAFDYSSKLTNFEGLIKPIFV 254
|
250 260
....*....|....*....|..
gi 2508160882 323 SGELFSISKNGDMNWSFYTDGP 344
Cdd:cd09213 255 FQVHEYASSNSVYIGAHENGQL 276
|
|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
149-182 |
7.57e-04 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 36.79 E-value: 7.57e-04
10 20 30
....*....|....*....|....*....|....
gi 2508160882 149 GVIYLASYDKKIYFIDKETGEILTTVPLSGGPSS 182
Cdd:pfam01011 1 GTVYLGSDDGYLYALDAETGKVLWSFKTGGAVLS 34
|
|
| PQQ_3 |
pfam13570 |
PQQ-like domain; |
253-289 |
1.17e-03 |
|
PQQ-like domain;
Pssm-ID: 463925 [Multi-domain] Cd Length: 36 Bit Score: 36.41 E-value: 1.17e-03
10 20 30
....*....|....*....|....*....|....*..
gi 2508160882 253 GQVKWSRTTSNAFKGYPVIDkDGNIYAGNQDGQLYAY 289
Cdd:pfam13570 1 GEVLWRFETGGPIVSSPAVA-GGLVYVGTGDGTLYAL 36
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
349-379 |
1.18e-03 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 36.36 E-value: 1.18e-03
10 20 30
....*....|....*....|....*....|..
gi 2508160882 349 PLIDAKGTVYFGSDDMKVYAADA-NGNELWSY 379
Cdd:smart00564 1 PVVLSDGTVYVGSTDGTLYALDAkTGEILWTY 32
|
|
| YvrE |
COG3386 |
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ... |
269-373 |
1.73e-03 |
|
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 442613 [Multi-domain] Cd Length: 266 Bit Score: 39.88 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 269 PVIDKDGNIYAGNQ-DGQLYAYTSTGSLKWTFPLNGFSSSSPAIDHNGNIYIGSGSGELFSIS-KNGDMNWSFYTDGPVR 346
Cdd:COG3386 13 PVWDPDGRLYWVDIpGGRIHRYDPDGGAVEVFAEPSGRPNGLAFDPDGRLLVADHGRGLVRFDpADGEVTVLADEYGKPL 92
|
90 100 110
....*....|....*....|....*....|....*
gi 2508160882 347 TAP---LIDAKGTVYFGS-----DDMKVYAADANG 373
Cdd:COG3386 93 NRPndgVVDPDGRLYFTDmgeylPTGALYRVDPDG 127
|
|
| Pgl |
COG2706 |
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism]; |
230-333 |
1.76e-03 |
|
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];
Pssm-ID: 442025 [Multi-domain] Cd Length: 352 Bit Score: 40.27 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 230 LAKNGTVYVGTYN-------YVfYAINSGTGQVKWSRTTSNAfkGYP---VIDKDGN-IYAGN--QDGQLYAYT---STG 293
Cdd:COG2706 4 LLLSTFVYVGTYTsgesegiYV-FRLDTATGELTLLGLVAAL--GNPsflALSPDGRfLYAVNevDDGGVSAFRidpADG 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2508160882 294 SLKwtfPLNGFSS--SSP---AIDHNGN-IYI---GSGSGELFSISKNG 333
Cdd:COG2706 81 TLT---LLNTVSSggASPchlSVDPDGRfLFVanyGGGSVSVFPIDADG 126
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
143-175 |
2.24e-03 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 35.20 E-value: 2.24e-03
10 20 30
....*....|....*....|....*....|...
gi 2508160882 143 PVLGTNGVIYLASYDKKIYFIDKETGEILTTVP 175
Cdd:smart00564 1 PVVLSDGTVYVGSTDGTLYALDAKTGEILWTYK 33
|
|
| YvrE |
COG3386 |
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ... |
228-402 |
2.69e-03 |
|
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 442613 [Multi-domain] Cd Length: 266 Bit Score: 39.10 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 228 PVLAKNGTVY-VGTYNYVFYAINSGTGQVK-WSRTT--SNAFkgypVIDKDGNIYAGNQDGQLYAYT-STGSLKWTFPLN 302
Cdd:COG3386 13 PVWDPDGRLYwVDIPGGRIHRYDPDGGAVEvFAEPSgrPNGL----AFDPDGRLLVADHGRGLVRFDpADGEVTVLADEY 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 303 GFSSSSP---AIDHNGNIYIGS-----GSGELFSISkngdmnwsfyTDGPVRTA--PLIDAKGTVyFGSDDMKVYAADAN 372
Cdd:COG3386 89 GKPLNRPndgVVDPDGRLYFTDmgeylPTGALYRVD----------PDGSLRVLadGLTFPNGIA-FSPDGRTLYVADTG 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2508160882 373 GNELWSYQTDSN-VVSSPQLA----------------EDGTLYIGSY 402
Cdd:COG3386 158 AGRIYRFDLDADgTLGNRRVFadlpdgpggpdglavdADGNLWVALW 204
|
|
| PQQ_3 |
pfam13570 |
PQQ-like domain; |
293-329 |
3.85e-03 |
|
PQQ-like domain;
Pssm-ID: 463925 [Multi-domain] Cd Length: 36 Bit Score: 34.87 E-value: 3.85e-03
10 20 30
....*....|....*....|....*....|....*..
gi 2508160882 293 GSLKWTFPLNGFSSSSPAIDhNGNIYIGSGSGELFSI 329
Cdd:pfam13570 1 GEVLWRFETGGPIVSSPAVA-GGLVYVGTGDGTLYAL 36
|
|
| PQQ_ADH_I |
cd10277 |
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); ... |
141-261 |
5.82e-03 |
|
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.
Pssm-ID: 199835 [Multi-domain] Cd Length: 529 Bit Score: 38.82 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508160882 141 QSPVLGTNGVIYLASYDKKIYFIDKETGEIL--------TTVPLSGGPSSETVIGSDGTLYFSTLDNYVHAI-KPTSKST 211
Cdd:cd10277 53 ESQPIVNDGVMYVTTSYNRVFAIDAKTGKELwkykhrlpEDIRPCCDVVNRGVALYGDKVYFGTLDAHLVALdAKTGKVV 132
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2508160882 212 WTERW-KLKTNGVVSSVPVLAKnGTVYVGTYNYVF------YAINSGTGQVKWSRTT 261
Cdd:cd10277 133 WKKKVaDYKAGYSMTLAPLVVK-GKVIVGVSGGEFgvrgfiAALDAETGKEVWRTYT 188
|
|
| |
