NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2509721059|gb|WHU29711|]
View 

NADH-plastoquinone oxidoreductase subunit 4L (chloroplast) [Dendrobium cariniferum]

Protein Classification

NAD(P)H-quinone oxidoreductase subunit 4L( domain architecture ID 10000006)

NAD(P)H-quinone oxidoreductase subunit 4L (ND4L) is part of the chloroplast NDH complex that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic and in the chloroplast respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-101 3.46e-47

NADH dehydrogenase subunit 4L


:

Pssm-ID: 176958  Cd Length: 101  Bit Score: 145.92  E-value: 3.46e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509721059   1 MMLEHVLFLSVYLFSIGIYGLITSRSMVRALMCLELILNSVNINLVTFSDIFDSRQLKGEIFSIFVIAIAAAEAAIGLAI 80
Cdd:CHL00015    1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                          90       100
                  ....*....|....*....|.
gi 2509721059  81 VSSIHRNRKSTRINQSNLLNN 101
Cdd:CHL00015   81 VSSIYRNRKSTRINQSNLLKK 101
 
Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-101 3.46e-47

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 145.92  E-value: 3.46e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509721059   1 MMLEHVLFLSVYLFSIGIYGLITSRSMVRALMCLELILNSVNINLVTFSDIFDSRQLKGEIFSIFVIAIAAAEAAIGLAI 80
Cdd:CHL00015    1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                          90       100
                  ....*....|....*....|.
gi 2509721059  81 VSSIHRNRKSTRINQSNLLNN 101
Cdd:CHL00015   81 VSSIYRNRKSTRINQSNLLKK 101
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-99 4.95e-18

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 72.02  E-value: 4.95e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509721059   1 MMLEHVLFLSVYLFSIGIYGLITSRSMVRALMCLELILNSVNINLVTFSDIFDsrQLKGEIFSIFVIAIAAAEAAIGLAI 80
Cdd:COG0713     1 IPLEHYLILAAILFAIGLYGVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLG--DLDGQVFALFVIAVAAAEVAVGLAI 78

                          90
                  ....*....|....*....
gi 2509721059  81 VSSIHRNRKSTRINQSNLL 99
Cdd:COG0713    79 IVALYRNRGTIDVDDLNEL 97
F420_dehyd_FpoK NF040614
F420H2 dehydrogenase subunit FpoK;
3-99 1.38e-13

F420H2 dehydrogenase subunit FpoK;


Pssm-ID: 468586  Cd Length: 98  Bit Score: 60.86  E-value: 1.38e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509721059   3 LEHVLFLSVYLFSIGIYGLITSRSMVRALMCLELILNSVNINLVTFSDIFDSrqLKGEIFSIFVIAIAAAEAAIGLAIVS 82
Cdd:NF040614    2 LELYLGLAAIIFSIGLYGFMTQKNGIRLLMCVELMLNSANINLVAFSSYNDD--LTGQVFALFSIALAAAEAAIGFAILM 79

                          90
                  ....*....|....*..
gi 2509721059  83 SIHRNRKSTRINQSNLL 99
Cdd:NF040614   80 AIYRMRDTINLDNINIL 96
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
5-99 5.64e-13

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 59.11  E-value: 5.64e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509721059   5 HVLFLSVYLFSIGIYGLITSRSMVRALMCLELILNSVNINLVTFSDIFDSrqLKGEIFSIFVIAIAAAEAAIGLAIVSSI 84
Cdd:pfam00420   1 AYLLLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAD--PLPQALILTAIVIAAAEAAVGLALLVRI 78

                          90
                  ....*....|....*
gi 2509721059  85 HRNRKSTRINQSNLL 99
Cdd:pfam00420  79 YRTHGTDDVDSLNLL 93
 
Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-101 3.46e-47

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 145.92  E-value: 3.46e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509721059   1 MMLEHVLFLSVYLFSIGIYGLITSRSMVRALMCLELILNSVNINLVTFSDIFDSRQLKGEIFSIFVIAIAAAEAAIGLAI 80
Cdd:CHL00015    1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                          90       100
                  ....*....|....*....|.
gi 2509721059  81 VSSIHRNRKSTRINQSNLLNN 101
Cdd:CHL00015   81 VSSIYRNRKSTRINQSNLLKK 101
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
1-99 1.47e-18

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 73.29  E-value: 1.47e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509721059   1 MMLEHVLFLSVYLFSIGIYGLITSRSMVRALMCLELILNSVNINLVTFSDIFDsrQLKGEIFSIFVIAIAAAEAAIGLAI 80
Cdd:PRK05715    2 IPLQHYLILAAILFCIGLVGLLLRRNAIVVLMSIELMLNAVNLNFVAFSSYLG--DLDGQVFAFFVITVAAAEAAIGLAI 79

                          90
                  ....*....|....*....
gi 2509721059  81 VSSIHRNRKSTRINQSNLL 99
Cdd:PRK05715   80 LLQLYRNRGTIDVDDLNEL 98
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-99 4.95e-18

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 72.02  E-value: 4.95e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509721059   1 MMLEHVLFLSVYLFSIGIYGLITSRSMVRALMCLELILNSVNINLVTFSDIFDsrQLKGEIFSIFVIAIAAAEAAIGLAI 80
Cdd:COG0713     1 IPLEHYLILAAILFAIGLYGVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLG--DLDGQVFALFVIAVAAAEVAVGLAI 78

                          90
                  ....*....|....*....
gi 2509721059  81 VSSIHRNRKSTRINQSNLL 99
Cdd:COG0713    79 IVALYRNRGTIDVDDLNEL 97
F420_dehyd_FpoK NF040614
F420H2 dehydrogenase subunit FpoK;
3-99 1.38e-13

F420H2 dehydrogenase subunit FpoK;


Pssm-ID: 468586  Cd Length: 98  Bit Score: 60.86  E-value: 1.38e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509721059   3 LEHVLFLSVYLFSIGIYGLITSRSMVRALMCLELILNSVNINLVTFSDIFDSrqLKGEIFSIFVIAIAAAEAAIGLAIVS 82
Cdd:NF040614    2 LELYLGLAAIIFSIGLYGFMTQKNGIRLLMCVELMLNSANINLVAFSSYNDD--LTGQVFALFSIALAAAEAAIGFAILM 79

                          90
                  ....*....|....*..
gi 2509721059  83 SIHRNRKSTRINQSNLL 99
Cdd:NF040614   80 AIYRMRDTINLDNINIL 96
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
5-99 5.64e-13

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 59.11  E-value: 5.64e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509721059   5 HVLFLSVYLFSIGIYGLITSRSMVRALMCLELILNSVNINLVTFSDIFDSrqLKGEIFSIFVIAIAAAEAAIGLAIVSSI 84
Cdd:pfam00420   1 AYLLLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAD--PLPQALILTAIVIAAAEAAVGLALLVRI 78

                          90
                  ....*....|....*
gi 2509721059  85 HRNRKSTRINQSNLL 99
Cdd:pfam00420  79 YRTHGTDDVDSLNLL 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH