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Conserved domains on  [gi|2512549661|gb|WIC83102|]
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cytochrome b, partial (mitochondrion) [Afronycteris nana]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-240 1.47e-155

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 436.76  E-value: 1.47e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00100  140 FWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIP 219

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00100  220 FHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSIL 299

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVFMPLVSLVENHLLKW 240
Cdd:MTH00100  300 ILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-240 1.47e-155

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 436.76  E-value: 1.47e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00100  140 FWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIP 219

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00100  220 FHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSIL 299

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVFMPLVSLVENHLLKW 240
Cdd:MTH00100  300 ILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-234 4.38e-65

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 206.95  E-value: 4.38e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFH-FLLPFIISALVMVHFLFLHETGSNNPTGI----PSN 75
Cdd:COG1290   151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEK 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  76 MDMIPFHPYYTIKDILGLFMMILVLLSLVLFSPDmlGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVL 153
Cdd:COG1290   231 VDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVI 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 154 ALVLSILILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVehPYIIIGQLASILYFSLIIVFMPLVSLV 233
Cdd:COG1290   309 AMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFI 386


                  .
gi 2512549661 234 E 234
Cdd:COG1290   387 E 387
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 68-215 1.52e-44

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 146.25  E-value: 1.52e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  68 NPTGIPSNMDMIPFHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPN 147
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2512549661 148 KLGGVLALVLSILILIIIPFLHTSKQRSmTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLA 215
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
119-219 1.24e-35

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 122.20  E-value: 1.24e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 119 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTW 198
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2512549661 199 IGGQPVEHPYIIIGQLASILY 219
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 108-186 2.08e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 49.03  E-value: 2.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 108 PDMLGDPdnyspANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIPFLHTSKQRSMTF-RPLSQCLF 186
Cdd:TIGR01156  59 PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-240 1.47e-155

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 436.76  E-value: 1.47e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00100  140 FWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIP 219

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00100  220 FHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSIL 299

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVFMPLVSLVENHLLKW 240
Cdd:MTH00100  300 ILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-240 1.19e-137

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 391.19  E-value: 1.19e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00119  141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00119  221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASIL 300

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVFMPLVSLVENHLLKW 240
Cdd:MTH00119  301 ILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-240 3.37e-134

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 382.46  E-value: 3.37e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00131  140 FWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKIS 219

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00131  220 FHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIL 299

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVFMPLVSLVENHLLKW 240
Cdd:MTH00131  300 VLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-240 2.88e-129

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 370.17  E-value: 2.88e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00074  141 FWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVP 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00074  221 FHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASIL 300

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVFMPLVSLVENHLLKW 240
Cdd:MTH00074  301 ILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-229 5.23e-121

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 348.44  E-value: 5.23e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00191  137 FWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIP 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00191  217 FHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSIL 296

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVFMPL 229
Cdd:MTH00191  297 VLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-227 1.61e-116

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 336.75  E-value: 1.61e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00156  130 FWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00156  210 FHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIL 289

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVFM 227
Cdd:MTH00156  290 ILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-238 9.26e-116

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 335.91  E-value: 9.26e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00034  140 FWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVP 219

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00034  220 FHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAIL 299

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVFMPLVSLVENHLL 238
Cdd:MTH00034  300 VLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00145
cytochrome b; Provisional
 1-238 2.08e-109

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 319.54  E-value: 2.08e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00145  141 FWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVP 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00145  221 FHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIV 300

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVfMPLVSLVENHLL 238
Cdd:MTH00145  301 ILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLI-LPLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-239 2.18e-106

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 312.00  E-value: 2.18e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00016  141 FWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVP 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00016  221 FHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASIL 300

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSlIIVFMPLVSLVENHLLK 239
Cdd:MTH00016  301 ILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-239 4.84e-99

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 293.54  E-value: 4.84e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00053  141 FWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIP 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00053  221 FHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSIL 300

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVFMPLVSLVENHLLK 239
Cdd:MTH00053  301 VLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 1-239 2.65e-97

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 288.91  E-value: 2.65e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00022  139 FWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVS 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00022  219 FHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSIL 298

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVFMPLVSLVENHLLK 239
Cdd:MTH00022  299 ILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-239 5.73e-90

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 270.25  E-value: 5.73e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00224  141 FWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIP 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00224  221 FHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAIL 300

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2512549661 161 ILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVfMPLVSLVENHLLK 239
Cdd:MTH00224  301 ILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFII-SPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-235 3.42e-68

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 214.80  E-value: 3.42e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00033  137 FWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTA 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFMM--ILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLS 158
Cdd:MTH00033  217 FHVYFTIKDILGFLILfgVFVIIGIEPRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFAS 296

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2512549661 159 ILILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPV-EHPYIIIGQLASILYFSLIIVFMPLVSLVEN 235
Cdd:MTH00033  297 ILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-234 4.38e-65

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 206.95  E-value: 4.38e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFH-FLLPFIISALVMVHFLFLHETGSNNPTGI----PSN 75
Cdd:COG1290   151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEK 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  76 MDMIPFHPYYTIKDILGLFMMILVLLSLVLFSPDmlGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVL 153
Cdd:COG1290   231 VDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVI 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 154 ALVLSILILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVehPYIIIGQLASILYFSLIIVFMPLVSLV 233
Cdd:COG1290   309 AMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFI 386


                  .
gi 2512549661 234 E 234
Cdd:COG1290   387 E 387
CYTB MTH00086
cytochrome b; Provisional
 1-227 1.17e-58

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 189.38  E-value: 1.17e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMIP 80
Cdd:MTH00086  129 FWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKIC 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  81 FHPYYTIKDILGLFmMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSIL 160
Cdd:MTH00086  209 FGPEYWNKDAYNII-FWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIV 287

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2512549661 161 ILIIIPFLHTSkqrSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVFM 227
Cdd:MTH00086  288 VFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-226 3.77e-46

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 156.68  E-value: 3.77e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSNNPTGIPSNM-DMI 79
Cdd:MTH00046  131 YWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVV 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  80 PFHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSI 159
Cdd:MTH00046  211 YFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFL 290

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2512549661 160 LILIIipflhTSKQRSMTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLASILYFSLIIVF 226
Cdd:MTH00046  291 FFLWV-----PTFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFIF 352
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 68-215 1.52e-44

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 146.25  E-value: 1.52e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661  68 NPTGIPSNMDMIPFHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPN 147
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2512549661 148 KLGGVLALVLSILILIIIPFLHTSKQRSmTFRPLSQCLFWLLTADLLTLTWIGGQPVEHPYIIIGQLA 215
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
119-219 1.24e-35

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 122.20  E-value: 1.24e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 119 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIPFLHTSKQRSMTFRPLSQCLFWLLTADLLTLTW 198
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2512549661 199 IGGQPVEHPYIIIGQLASILY 219
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-67 1.01e-28

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 107.45  E-value: 1.01e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETGSN 67
Cdd:cd00284   134 YWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-65 1.64e-26

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 101.30  E-value: 1.64e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHFLFLHETG 65
Cdd:pfam00033 125 YWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-114 1.02e-25

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 98.47  E-value: 1.02e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFHF-LLPFIISALVMVHFLFLHETGSNNPTGIPSNMDMI 79
Cdd:pfam13631  55 GTGLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGV 134

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2512549661  80 PFHPYYTIKDILGLFMMILVLLSLVLFSPDMLGDP 114
Cdd:pfam13631 135 PFWPVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
petB CHL00070
cytochrome b6
 1-69 1.54e-10

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 58.96  E-value: 1.54e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFH-FLLPFIISALVMVHFLFLHETGSNNP 69
Cdd:CHL00070  145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PRK03735 PRK03735
cytochrome b6; Provisional
 1-69 6.40e-10

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 57.41  E-value: 6.40e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661   1 FWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKATLTRFFAFH-FLLPFIISALVMVHFLFLHETGSNNP 69
Cdd:PRK03735  153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 108-186 8.66e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 53.26  E-value: 8.66e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 108 PDMLGDPdnyspANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIPFLHTSKQRSMTF-RPLSQCLF 186
Cdd:COG5679    60 PAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVF 134
petD CHL00058
cytochrome b6/f complex subunit IV
 108-186 2.21e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 51.93  E-value: 2.21e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 108 PDMLGDPdnyspANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIPFL-HTSKQRSMTFRPLSQCLF 186
Cdd:CHL00058   59 PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVATTVF 133
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 108-186 2.08e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 49.03  E-value: 2.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2512549661 108 PDMLGDPdnyspANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIPFLHTSKQRSMTF-RPLSQCLF 186
Cdd:TIGR01156  59 PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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