NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2553040245|gb|WKW52731|]
View 

cytochrome b, partial (mitochondrion) [Galaxias johnstoni]

Protein Classification

cytochrome b( domain architecture ID 11475912)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-371 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 775.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   1 HPLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGA 80
Cdd:MTH00131    8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  81 SFFFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGG 160
Cdd:MTH00131   88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 161 FSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSP 240
Cdd:MTH00131  168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 241 NMLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWA 320
Cdd:MTH00131  248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2553040245 321 LVADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLVLAPMVGWAENKALE 371
Cdd:MTH00131  328 LVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-371 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 775.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   1 HPLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGA 80
Cdd:MTH00131    8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  81 SFFFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGG 160
Cdd:MTH00131   88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 161 FSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSP 240
Cdd:MTH00131  168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 241 NMLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWA 320
Cdd:MTH00131  248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2553040245 321 LVADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLVLAPMVGWAENKALE 371
Cdd:MTH00131  328 LVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
15-366 3.55e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 365.65  E-value: 3.55e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  15 PAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGASFFFICIYMHIGRG 94
Cdd:COG1290    31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  95 LYYGSylYKE----TWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGGFSVDNATLTR 170
Cdd:COG1290   111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 171 FFAF-HFLFPFVIAGATVLHLLFLHETGSNNPAG----LNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSPNmlGD 245
Cdd:COG1290   189 FFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 246 SENFIPANPLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWALVA 323
Cdd:COG1290   267 PPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIV 346

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2553040245 324 DVLVLTWIGGMPVehPYIIIGQVASTIYFAIFLVLAPMVGWAE 366
Cdd:COG1290   347 FFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 1.49e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 262.69  E-value: 1.49e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   2 PLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  82 FFFICIYMHIGRGLYYGSY--LYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2553040245 160 GFSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 1.98e-78

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 239.21  E-value: 1.98e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  11 LVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGASFFFICIYMH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  91 IGRGLYYG--SYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGGFSVDNATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2553040245 169 TRFFAFHFLFPFVIAGATVLHLLFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 232-323 4.73e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.58  E-value: 4.73e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 232 LTSLALFSPNMLGDsenfiPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFR 311
Cdd:TIGR01156  51 VVGLAVLDPAMIGE-----PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125

                          90
                  ....*....|....*
gi 2553040245 312 ---PLTQFLFWALVA 323
Cdd:TIGR01156 126 rpvATTVFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-371 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 775.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   1 HPLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGA 80
Cdd:MTH00131    8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  81 SFFFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGG 160
Cdd:MTH00131   88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 161 FSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSP 240
Cdd:MTH00131  168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 241 NMLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWA 320
Cdd:MTH00131  248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2553040245 321 LVADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLVLAPMVGWAENKALE 371
Cdd:MTH00131  328 LVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00119
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 690.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   1 HPLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGA 80
Cdd:MTH00119    9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  81 SFFFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGG 160
Cdd:MTH00119   89 SMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 161 FSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSP 240
Cdd:MTH00119  169 FSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 241 NMLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWA 320
Cdd:MTH00119  249 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWT 328

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 2553040245 321 LVADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLVLAPMVGWAENKAL 370
Cdd:MTH00119  329 LVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKML 378
CYTB MTH00074
cytochrome b; Provisional
 1-371 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 679.10  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   1 HPLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGA 80
Cdd:MTH00074    9 HPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  81 SFFFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGG 160
Cdd:MTH00074   89 SFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 161 FSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSP 240
Cdd:MTH00074  169 FSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 241 NMLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWA 320
Cdd:MTH00074  249 NLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWL 328

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2553040245 321 LVADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLVLAPMVGWAENKALE 371
Cdd:MTH00074  329 LVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00100
cytochrome b; Provisional
 1-371 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 664.80  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   1 HPLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  81 SFFFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 161 FSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 241 NMLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWA 320
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2553040245 321 LVADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLVLAPMVGWAENKALE 371
Cdd:MTH00100  328 LVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00191
cytochrome b; Provisional
 1-361 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 650.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   1 HPLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGA 80
Cdd:MTH00191    5 HPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  81 SFFFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGG 160
Cdd:MTH00191   85 SFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 161 FSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSP 240
Cdd:MTH00191  165 FSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSP 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 241 NMLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWA 320
Cdd:MTH00191  245 NLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWL 324

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 2553040245 321 LVADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLVLAPM 361
Cdd:MTH00191  325 WVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 4-358 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 630.28  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   4 LKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGASFF 83
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  84 FICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGGFSV 163
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 164 DNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSPNML 243
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 244 GDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWALVA 323
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2553040245 324 DVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLVL 358
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00034
cytochrome b; Validated
 1-368 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 609.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   1 HPLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGA 80
Cdd:MTH00034    8 HPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  81 SFFFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGG 160
Cdd:MTH00034   88 SLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 161 FSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSP 240
Cdd:MTH00034  168 FSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 241 NMLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWA 320
Cdd:MTH00034  248 TALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWL 327

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 2553040245 321 LVADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLVLAPMVGWAENK 368
Cdd:MTH00034  328 LIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENK 375
CYTB MTH00145
cytochrome b; Provisional
 1-370 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 598.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   1 HPLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGA 80
Cdd:MTH00145    9 HPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  81 SFFFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGG 160
Cdd:MTH00145   89 SFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 161 FSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSP 240
Cdd:MTH00145  169 FSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 241 NMLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWA 320
Cdd:MTH00145  249 NLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWI 328

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 2553040245 321 LVADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLVLaPMVGWAENKAL 370
Cdd:MTH00145  329 FVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-358 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 559.68  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   1 HPLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGA 80
Cdd:MTH00016    9 HPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  81 SFFFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGG 160
Cdd:MTH00016   89 SFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 161 FSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSP 240
Cdd:MTH00016  169 FSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 241 NMLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWA 320
Cdd:MTH00016  249 NILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWL 328

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 2553040245 321 LVADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLVL 358
Cdd:MTH00016  329 LVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMIN 366
CYTB MTH00022
cytochrome b; Validated
 1-370 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 525.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   1 HPLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGA 80
Cdd:MTH00022    7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  81 SFFFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGG 160
Cdd:MTH00022   87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 161 FSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSP 240
Cdd:MTH00022  167 FSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAP 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 241 NMLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWA 320
Cdd:MTH00022  247 NLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWF 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 2553040245 321 LVADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLVLAPMVGWAENKAL 370
Cdd:MTH00022  327 LIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLL 376
CYTB MTH00053
cytochrome b; Provisional
 2-370 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 508.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   2 PLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGAS 81
Cdd:MTH00053   10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  82 FFFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGGF 161
Cdd:MTH00053   90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 162 SVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSPN 241
Cdd:MTH00053  170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 242 MLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWAL 321
Cdd:MTH00053  250 SLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFL 329

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 2553040245 322 VADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLVLAPMVGWAENKAL 370
Cdd:MTH00053  330 VGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLL 378
CYTB MTH00224
cytochrome b; Provisional
 1-370 9.18e-175

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 491.36  E-value: 9.18e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   1 HPLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGA 80
Cdd:MTH00224    9 HPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  81 SFFFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGG 160
Cdd:MTH00224   89 SMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 161 FSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSP 240
Cdd:MTH00224  169 FAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 241 NMLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWA 320
Cdd:MTH00224  249 NLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWL 328

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 2553040245 321 LVADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFlVLAPMVGWAENKAL 370
Cdd:MTH00224  329 LVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYF-IISPAISKLWDDLL 377
CYTB MTH00033
cytochrome b; Provisional
 11-367 6.16e-139

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 400.47  E-value: 6.16e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  11 LVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGASFFFICIYMH 90
Cdd:MTH00033   15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  91 IGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGGFSVDNATLTR 170
Cdd:MTH00033   95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNR 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 171 FFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVAL--LFALTSLALFSPNMLGDSEN 248
Cdd:MTH00033  175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILfgVFVIIGIEPRIETLLQDPEN 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 249 FIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWALVADVLVL 328
Cdd:MTH00033  255 FIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIIL 334

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 2553040245 329 TWIGGMPV-EHPYIIIGQVASTIYFAIFLVLAPMVGWAEN 367
Cdd:MTH00033  335 TWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
15-366 3.55e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 365.65  E-value: 3.55e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  15 PAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGASFFFICIYMHIGRG 94
Cdd:COG1290    31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  95 LYYGSylYKE----TWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGGFSVDNATLTR 170
Cdd:COG1290   111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 171 FFAF-HFLFPFVIAGATVLHLLFLHETGSNNPAG----LNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSPNmlGD 245
Cdd:COG1290   189 FFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 246 SENFIPANPLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWALVA 323
Cdd:COG1290   267 PPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIV 346

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2553040245 324 DVLVLTWIGGMPVehPYIIIGQVASTIYFAIFLVLAPMVGWAE 366
Cdd:COG1290   347 FFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 8-358 3.71e-122

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 356.56  E-value: 3.71e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   8 NSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGASFFFICI 87
Cdd:MTH00086    4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  88 YMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGGFSVDNAT 167
Cdd:MTH00086   84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 168 LTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFaLTSLALFSPNMLGDSE 247
Cdd:MTH00086  164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPE 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 248 NFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQrglTFRPLTQFLFWALVADVLV 327
Cdd:MTH00086  243 MFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVI 319

                         330       340       350
                  ....*....|....*....|....*....|.
gi 2553040245 328 LTWIGGMPVEHPYIIIGQVASTIYFAIFLVL 358
Cdd:MTH00086  320 LSWLGQCLVEYPFLFLSQIFSFIYFFLILLM 350
CYTB MTH00046
cytochrome b; Validated
 3-357 1.62e-89

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 273.40  E-value: 1.62e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   3 LLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGASF 82
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  83 FFICIYMHIGRGLYYGSYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGGFS 162
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 163 VDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSNNPAGL-NSDADKISFHPYFSYKDLLGFVALLFALTSLALFSPN 241
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 242 MLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGvLALLFSILVLLVVPilhtSKQRGLTFRPLTQFLFWAL 321
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLI 315

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 2553040245 322 VADVLVLTWIGGMPVEHPYIIIGQVASTIYFAIFLV 357
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 1.49e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 262.69  E-value: 1.49e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245   2 PLLKIANSALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  82 FFFICIYMHIGRGLYYGSY--LYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2553040245 160 GFSVDNATLTRFFAFHFLFPFVIAGATVLHLLFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 1.98e-78

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 239.21  E-value: 1.98e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  11 LVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGASFFFICIYMH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  91 IGRGLYYG--SYLYKETWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGGFSVDNATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2553040245 169 TRFFAFHFLFPFVIAGATVLHLLFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 200-347 2.77e-56

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 180.92  E-value: 2.77e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 200 NPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLALFSPNMLGDSENFIPANPLVTPPHIQPEWYFLFAYAILRSIPN 279
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2553040245 280 KLGGVLALLFSILVLLVVPILHTSKQRGlTFRPLTQFLFWALVADVLVLTWIGGMPVEHPYIIIGQVA 347
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
251-351 4.20e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.03  E-value: 4.20e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 251 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFRPLTQFLFWALVADVLVLTW 330
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2553040245 331 IGGMPVEHPYIIIGQVASTIY 351
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
81-245 4.68e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 144.69  E-value: 4.68e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  81 SFFFICIYMHIGRGLYYGSYLYKE--TWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIW 158
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 159 GGFSVDNATLTRFFAF-HFLFPFVIAGATVLHLLFLHETGSNNPAGLNSDADKISFHPYFSYKDLLGFVALLFALTSLAL 237
Cdd:pfam13631  81 GGPFPGTATIPRFYALhILLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*...
gi 2553040245 238 FSPNMLGD 245
Cdd:pfam13631 161 INPIWLGG 168
PRK03735 PRK03735
cytochrome b6; Provisional
 15-201 6.16e-31

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 117.12  E-value: 6.16e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  15 PAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGASFFFICIYMHIGRG 94
Cdd:PRK03735   33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  95 LYYGSYLYKE--TWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGGFSVDNATLTRFF 172
Cdd:PRK03735  113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                         170       180       190
                  ....*....|....*....|....*....|
gi 2553040245 173 AFHFLFP-FVIAGATVLHLLFLHETGSNNP 201
Cdd:PRK03735  193 AIHVFFLpWALAVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 17-201 2.43e-24

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 99.41  E-value: 2.43e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  17 PSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVTHICRDVSYGWLIRNMHANGASFFFICIYMHIGRGLY 96
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245  97 YGSYLYKE--TWTIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNDLVQWIWGGFSVDNATLTRFFAF 174
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 2553040245 175 HFLFPFVIAGATVL-HLLFLHETGSNNP 201
Cdd:CHL00070  187 HTFVLPLLTAVFMLmHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 229-322 1.80e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 64.81  E-value: 1.80e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 229 LFALTSLALFSPNMLGDsenfiPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGL 308
Cdd:COG5679    49 IALCIGLAVLDPAMMGE-----PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQN 123

                          90
                  ....*....|....*..
gi 2553040245 309 TFR---PLTQFLFWALV 322
Cdd:COG5679   124 PFRrpvATAVFLFGTLV 140
petD CHL00058
cytochrome b6/f complex subunit IV
 229-323 2.03e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 64.64  E-value: 2.03e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 229 LFALTSLALFSPNMLGDsenfiPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGL 308
Cdd:CHL00058   48 IACNVGLAVLEPSMIGE-----PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQN 122

                          90
                  ....*....|....*...
gi 2553040245 309 TFR---PLTQFLFWALVA 323
Cdd:CHL00058  123 PFRrpvATTVFLIGTAVA 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 232-323 4.73e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.58  E-value: 4.73e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2553040245 232 LTSLALFSPNMLGDsenfiPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLFSILVLLVVPILHTSKQRGLTFR 311
Cdd:TIGR01156  51 VVGLAVLDPAMIGE-----PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125

                          90
                  ....*....|....*
gi 2553040245 312 ---PLTQFLFWALVA 323
Cdd:TIGR01156 126 rpvATTVFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH