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Conserved domains on  [gi|2558033697|gb|WLF37914|]
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conjugal transfer protein TrbE (plasmid) [Klebsiella pneumoniae]

Protein Classification

conjugal transfer protein TrbE( domain architecture ID 10014369)

conjugal transfer protein TrbE is component of type IV trb conjugal transporter system

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13718 PRK13718
conjugal transfer protein TrbE; Provisional
 1-84 5.96e-44

conjugal transfer protein TrbE; Provisional


:

Pssm-ID: 172260  Cd Length: 84  Bit Score: 136.85  E-value: 5.96e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558033697  1 MKVIFTSNRLVDFLIRLSITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFILYFCFSALTGLQKDDERKNDE 80
Cdd:PRK13718   1 MKVIFTSNRIIDFLIRLTITAIVISPVIYWSWDTVKETTADDMLAAVFVILYSGVLLFILYFFFSALTKLQKHDERKSDE 80


                 ....
gi 2558033697 81 RNED 84
Cdd:PRK13718  81 RNED 84
 
Name Accession Description Interval E-value
PRK13718 PRK13718
conjugal transfer protein TrbE; Provisional
 1-84 5.96e-44

conjugal transfer protein TrbE; Provisional


Pssm-ID: 172260  Cd Length: 84  Bit Score: 136.85  E-value: 5.96e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558033697  1 MKVIFTSNRLVDFLIRLSITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFILYFCFSALTGLQKDDERKNDE 80
Cdd:PRK13718   1 MKVIFTSNRIIDFLIRLTITAIVISPVIYWSWDTVKETTADDMLAAVFVILYSGVLLFILYFFFSALTKLQKHDERKSDE 80


                 ....
gi 2558033697 81 RNED 84
Cdd:PRK13718  81 RNED 84
TrbE pfam11100
Conjugal transfer protein TrbE; TrbE is essential for conjugation and phage adsorption. It ...
 9-74 2.31e-10

Conjugal transfer protein TrbE; TrbE is essential for conjugation and phage adsorption. It contains four common motifs and one conserved domain.


Pssm-ID: 314118  Cd Length: 66  Bit Score: 51.15  E-value: 2.31e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2558033697  9 RLVDFLIRLSITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGvLLFILYFCF-SALTGLQKDD 74
Cdd:pfam11100  1 KIMSFLVRVVVTLIVISPAVYWSWDAVSTTTADDIMLAVLIIAAYG-LMFTLLFCFvNVLTKLLQHD 66
 
Name Accession Description Interval E-value
PRK13718 PRK13718
conjugal transfer protein TrbE; Provisional
 1-84 5.96e-44

conjugal transfer protein TrbE; Provisional


Pssm-ID: 172260  Cd Length: 84  Bit Score: 136.85  E-value: 5.96e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558033697  1 MKVIFTSNRLVDFLIRLSITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFILYFCFSALTGLQKDDERKNDE 80
Cdd:PRK13718   1 MKVIFTSNRIIDFLIRLTITAIVISPVIYWSWDTVKETTADDMLAAVFVILYSGVLLFILYFFFSALTKLQKHDERKSDE 80


                 ....
gi 2558033697 81 RNED 84
Cdd:PRK13718  81 RNED 84
TrbE pfam11100
Conjugal transfer protein TrbE; TrbE is essential for conjugation and phage adsorption. It ...
 9-74 2.31e-10

Conjugal transfer protein TrbE; TrbE is essential for conjugation and phage adsorption. It contains four common motifs and one conserved domain.


Pssm-ID: 314118  Cd Length: 66  Bit Score: 51.15  E-value: 2.31e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2558033697  9 RLVDFLIRLSITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGvLLFILYFCF-SALTGLQKDD 74
Cdd:pfam11100  1 KIMSFLVRVVVTLIVISPAVYWSWDAVSTTTADDIMLAVLIIAAYG-LMFTLLFCFvNVLTKLLQHD 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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