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Conserved domains on  [gi|2558400874|gb|WLF94884|]
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cytochrome b, partial (mitochondrion) [Tachyoryctes splendens]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-292 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 601.63  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   1 SHPLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANG 80
Cdd:MTH00100    7 THPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANG 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  81 ASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 160
Cdd:MTH00100   87 ASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 161 GFSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFA 240
Cdd:MTH00100  167 GFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFS 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2558400874 241 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00100  247 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSI 298
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-292 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 601.63  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   1 SHPLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANG 80
Cdd:MTH00100    7 THPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANG 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  81 ASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 160
Cdd:MTH00100   87 ASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 161 GFSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFA 240
Cdd:MTH00100  167 GFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFS 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2558400874 241 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00100  247 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSI 298
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-292 3.08e-114

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 334.45  E-value: 3.08e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   3 PLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGAS 82
Cdd:COG1290    19 PLASLVREH-LEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  83 MFFICLFLHIGRGTYYGSYT----LseTWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWI 158
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKkpreL--NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 159 WGGFSVDKATLSRFFAFH-FILPFVITALVMVHLLFLHETGSNNPTG----LNSNADKIPFHPYYTIKDILGFILLCLIL 233
Cdd:COG1290   176 FGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVF 255

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2558400874 234 ISLTLFAPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVIALILSI 292
Cdd:COG1290   256 ALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAI 314
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 3-200 4.28e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 281.56  E-value: 4.28e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   3 PLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGAS 82
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  83 MFFICLFLHIGRGTYYGSY--TLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 160
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2558400874 161 GFSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSN 200
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-198 4.67e-89

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 263.09  E-value: 4.67e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  13 IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMFFICLFLHI 92
Cdd:pfam00033   2 VSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  93 GRGTYYG--SYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLS 170
Cdd:pfam00033  82 FRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLT 161

                         170       180
                  ....*....|....*....|....*...
gi 2558400874 171 RFFAFHFILPFVITALVMVHLLFLHETG 198
Cdd:pfam00033 162 RFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 252-288 6.32e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 48.25  E-value: 6.32e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2558400874 252 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIAL 288
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLM 101
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-292 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 601.63  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   1 SHPLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANG 80
Cdd:MTH00100    7 THPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANG 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  81 ASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 160
Cdd:MTH00100   87 ASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 161 GFSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFA 240
Cdd:MTH00100  167 GFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFS 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2558400874 241 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00100  247 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSI 298
CYTB MTH00119
cytochrome b; Provisional
 1-292 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 554.13  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   1 SHPLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANG 80
Cdd:MTH00119    8 SHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  81 ASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 160
Cdd:MTH00119   88 ASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 161 GFSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFA 240
Cdd:MTH00119  168 GFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFS 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2558400874 241 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00119  248 PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASI 299
CYTB MTH00131
cytochrome b; Provisional
 1-292 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 543.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   1 SHPLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANG 80
Cdd:MTH00131    7 THPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANG 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  81 ASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 160
Cdd:MTH00131   87 ASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 161 GFSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFA 240
Cdd:MTH00131  167 GFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFS 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2558400874 241 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00131  247 PNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSI 298
CYTB MTH00156
cytochrome b; Provisional
 5-292 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 540.91  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   5 MKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMF 84
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  85 FICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSV 164
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 165 DKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFAPDLL 244
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 2558400874 245 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSI 288
CYTB MTH00074
cytochrome b; Provisional
 1-292 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 535.03  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   1 SHPLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANG 80
Cdd:MTH00074    8 THPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  81 ASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 160
Cdd:MTH00074   88 ASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 161 GFSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFA 240
Cdd:MTH00074  168 GFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFS 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2558400874 241 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00074  248 PNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASI 299
CYTB MTH00191
cytochrome b; Provisional
 1-292 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 528.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   1 SHPLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANG 80
Cdd:MTH00191    4 THPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  81 ASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 160
Cdd:MTH00191   84 ASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 161 GFSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFA 240
Cdd:MTH00191  164 GFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFS 243

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2558400874 241 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00191  244 PNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSI 295
CYTB MTH00145
cytochrome b; Provisional
 1-292 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 505.98  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   1 SHPLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANG 80
Cdd:MTH00145    8 SHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  81 ASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 160
Cdd:MTH00145   88 ASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 161 GFSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFA 240
Cdd:MTH00145  168 GFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFF 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2558400874 241 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00145  248 PNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSI 299
CYTB MTH00016
cytochrome b; Validated
 1-292 6.84e-175

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 488.03  E-value: 6.84e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   1 SHPLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANG 80
Cdd:MTH00016    8 THPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  81 ASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 160
Cdd:MTH00016   88 ASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 161 GFSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFA 240
Cdd:MTH00016  168 GFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLW 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2558400874 241 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00016  248 PNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASI 299
CYTB MTH00034
cytochrome b; Validated
 1-292 1.98e-173

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 484.21  E-value: 1.98e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   1 SHPLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANG 80
Cdd:MTH00034    7 SHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANG 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  81 ASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 160
Cdd:MTH00034   87 ASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 161 GFSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFA 240
Cdd:MTH00034  167 GFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLF 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2558400874 241 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00034  247 PTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAI 298
CYTB MTH00224
cytochrome b; Provisional
 1-292 1.02e-151

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 429.34  E-value: 1.02e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   1 SHPLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANG 80
Cdd:MTH00224    8 THPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  81 ASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 160
Cdd:MTH00224   88 ASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 161 GFSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFA 240
Cdd:MTH00224  168 GFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFE 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2558400874 241 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00224  248 PNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAI 299
CYTB MTH00022
cytochrome b; Validated
 2-292 2.17e-150

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 426.04  E-value: 2.17e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   2 HPLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGA 81
Cdd:MTH00022    7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  82 SMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGG 161
Cdd:MTH00022   87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 162 FSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFAP 241
Cdd:MTH00022  167 FSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAP 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2558400874 242 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00022  247 NLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSI 297
CYTB MTH00053
cytochrome b; Provisional
 3-292 2.22e-145

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 413.33  E-value: 2.22e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   3 PLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGAS 82
Cdd:MTH00053   10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  83 MFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 162
Cdd:MTH00053   90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 163 SVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFAPD 242
Cdd:MTH00053  170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2558400874 243 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00053  250 SLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSI 299
CYTB MTH00033
cytochrome b; Provisional
 13-292 2.10e-117

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 342.30  E-value: 2.10e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  13 IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMFFICLFLHI 92
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  93 GRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLSRF 172
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 173 FAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFA--PDLLGDPDNY 250
Cdd:MTH00033  176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENF 255

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 2558400874 251 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00033  256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASI 297
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-292 3.08e-114

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 334.45  E-value: 3.08e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   3 PLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGAS 82
Cdd:COG1290    19 PLASLVREH-LEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  83 MFFICLFLHIGRGTYYGSYT----LseTWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWI 158
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKkpreL--NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 159 WGGFSVDKATLSRFFAFH-FILPFVITALVMVHLLFLHETGSNNPTG----LNSNADKIPFHPYYTIKDILGFILLCLIL 233
Cdd:COG1290   176 FGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVF 255

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2558400874 234 ISLTLFAPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVIALILSI 292
Cdd:COG1290   256 ALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAI 314
CYTB MTH00086
cytochrome b; Provisional
 6-292 2.02e-112

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 328.82  E-value: 2.02e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   6 KIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMFF 85
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  86 ICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVD 165
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 166 KATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDiLGFILLCLILISLTLFAPDLLG 245
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLG 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2558400874 246 DPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSI 286
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 3-200 4.28e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 281.56  E-value: 4.28e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   3 PLMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGAS 82
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  83 MFFICLFLHIGRGTYYGSY--TLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 160
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2558400874 161 GFSVDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSN 200
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-198 4.67e-89

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 263.09  E-value: 4.67e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  13 IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMFFICLFLHI 92
Cdd:pfam00033   2 VSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  93 GRGTYYG--SYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLS 170
Cdd:pfam00033  82 FRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLT 161

                         170       180
                  ....*....|....*....|....*...
gi 2558400874 171 RFFAFHFILPFVITALVMVHLLFLHETG 198
Cdd:pfam00033 162 RFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 4-292 6.16e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 263.77  E-value: 6.16e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874   4 LMKIINHT*IDLPTPSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASM 83
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  84 FFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 163
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 164 VDKATLSRFFAFHFILPFVITALVMVHLLFLHETGSNNPTGL-NSNADKIPFHPYYTIKDILGFILLCLILISLTLFAPD 242
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2558400874 243 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIaLILSI 292
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSF 289
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
82-247 4.83e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 142.38  E-value: 4.83e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  82 SMFFICLFLHIGRGTYYGSY--TLSETWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIW 159
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYrkPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 160 GGFSVDKATLSRFFAFHF-ILPFVITALVMVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTL 238
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2558400874 239 FAPDLLGDP 247
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 27-202 4.94e-42

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 144.08  E-value: 4.94e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  27 FGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMFFICLFLHIGRGTYYGSYTLSE- 105
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 106 -TWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLSRFFAFH-FILPFVI 183
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 2558400874 184 TALVMVHLLFLHETGSNNP 202
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 18-202 2.69e-36

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 129.07  E-value: 2.69e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  18 PSNISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMFFICLFLHIGRGTY 97
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874  98 YGSYTLSE--TWNIGILLVFSTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLSRFFAF 175
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 2558400874 176 H-FILPFVITALVMVHLLFLHETGSNNP 202
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 201-292 2.03e-32

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 116.98  E-value: 2.03e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2558400874 201 NPTGLNSNADKIPFHPYYTIKDILGFILLCLILISLTLFAPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 280
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90
                  ....*....|..
gi 2558400874 281 KLGGVIALILSI 292
Cdd:cd00290    81 KLLGVLAMAASI 92
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
252-292 1.30e-20

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 84.45  E-value: 1.30e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2558400874 252 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSI 292
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAI 41
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 252-288 1.86e-08

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 52.87  E-value: 1.86e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2558400874 252 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIAL 288
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMM 102
petD CHL00058
cytochrome b6/f complex subunit IV
 252-288 3.92e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 51.54  E-value: 3.92e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2558400874 252 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIAL 288
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLM 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 252-288 6.32e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 48.25  E-value: 6.32e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2558400874 252 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIAL 288
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLM 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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