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Conserved domains on  [gi|2563084940|gb|WLS35056|]
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cytochrome b (mitochondrion) [Lerista microtis microtis]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 724.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   1 MTHNLRKTHPILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLI 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  81 RNLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTS 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 161 LVEWIWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 241 LFLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 321 LSQILFWTLISNIIILTWIGGQPVEDPFIIIGQIASTTYFIIFLILMPITAKMENLLMKW 380
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 724.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   1 MTHNLRKTHPILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLI 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  81 RNLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTS 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 161 LVEWIWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 241 LFLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 321 LSQILFWTLISNIIILTWIGGQPVEDPFIIIGQIASTTYFIIFLILMPITAKMENLLMKW 380
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-374 1.44e-130

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 379.90  E-value: 1.44e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  12 LKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLHANGASMF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  92 FICLYLHIGRGLYYGSYMY-KE-TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEWIWGGF 169
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKpRElNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 170 SVDNATLTRFFTFH-FLLPFVIMGASMLHLLFLHETGSNNPTG----LTSNTDKIPFHPYYTYKDLLGATLLLLLLLFLA 244
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 245 LFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILILILVPMLHTSKQRGNAFRPLS 322
Cdd:COG1290   260 FFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2563084940 323 QILFWTLISNIIILTWIGGQPveDPFIIIGQIASTTYFIIFLILMPITAKME 374
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 6.61e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 291.96  E-value: 6.61e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  10 PILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  90 MFFICLYLHIGRGLYYGSYM--YKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEWIWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2563084940 168 GFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 4.71e-91

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 271.56  E-value: 4.71e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  19 FIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLHANGASMFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  99 IGRGLYYG--SYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEWIWGGFSVDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2563084940 177 TRFFTFHFLLPFVIMGASMLHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-340 7.25e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.42  E-value: 7.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAF-RPLSQILFwtLISNIIILt 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 2563084940 338 WIG 340
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 724.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   1 MTHNLRKTHPILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLI 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  81 RNLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTS 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 161 LVEWIWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 241 LFLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 321 LSQILFWTLISNIIILTWIGGQPVEDPFIIIGQIASTTYFIIFLILMPITAKMENLLMKW 380
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 4-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 710.27  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   4 NLRKTHPILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNL 83
Cdd:MTH00131    3 SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  84 HANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVE 163
Cdd:MTH00131   83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 164 WIWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLLLFL 243
Cdd:MTH00131  163 WIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 244 ALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRPLSQ 323
Cdd:MTH00131  243 ALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2563084940 324 ILFWTLISNIIILTWIGGQPVEDPFIIIGQIASTTYFIIFLILMPITAKMENLLMKW 380
Cdd:MTH00131  323 FLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 704.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   1 MTHNLRKTHPILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLI 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  81 RNLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTS 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 161 LVEWIWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 241 LFLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 321 LSQILFWTLISNIIILTWIGGQPVEDPFIIIGQIASTTYFIIFLILMPITAKMENLLMKW 380
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00100
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 689.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   1 MThNLRKTHPILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLI 80
Cdd:MTH00100    1 MT-NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWII 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  81 RNLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTS 160
Cdd:MTH00100   80 RYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 161 LVEWIWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLL 240
Cdd:MTH00100  160 LVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 241 LFLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRP 320
Cdd:MTH00100  240 MLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRP 319

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 321 LSQILFWTLISNIIILTWIGGQPVEDPFIIIGQIASTTYFIIFLILMPITAKMENLLMKW 380
Cdd:MTH00100  320 LSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00191
cytochrome b; Provisional
 5-369 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 651.21  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   5 LRKTHPILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  85 ANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 165 IWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLLLFLA 244
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 245 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRPLSQI 324
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 2563084940 325 LFWTLISNIIILTWIGGQPVEDPFIIIGQIASTTYFIIFLILMPI 369
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 620.65  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  12 LKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLHANGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  92 FICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEWIWGGFSV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 172 DNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLLLFLALFSPNLL 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 252 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRPLSQILFWTLIS 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 2563084940 332 NIIILTWIGGQPVEDPFIIIGQIASTTYFIIFLILM 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 5-377 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 617.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   5 LRKTHPILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLH 84
Cdd:MTH00034    4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  85 ANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEW 164
Cdd:MTH00034   84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 165 IWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLLLFLA 244
Cdd:MTH00034  164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 245 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRPLSQI 324
Cdd:MTH00034  244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2563084940 325 LFWTLISNIIILTWIGGQPVEDPFIIIGQIASTTYFIIFLILMPITAKMENLL 377
Cdd:MTH00034  324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKL 376
CYTB MTH00145
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 613.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   1 MTHNLRKTHPILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLI 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  81 RNLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTS 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 161 LVEWIWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLL 240
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 241 LFLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRP 320
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2563084940 321 LSQILFWTLISNIIILTWIGGQPVEDPFIIIGQIASTTYFIIFLILMPITAKMENLLMK 379
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNILDY 379
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 583.18  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   1 MTHNLRKTHPILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLI 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  81 RNLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTS 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 161 LVEWIWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLL 240
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 241 LFLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRP 320
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2563084940 321 LSQILFWTLISNIIILTWIGGQPVEDPFIIIGQIASTTYFIIFLIlMPITAKM-ENLLM 378
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMI-NPLLMKLwDKLLK 378
CYTB MTH00022
cytochrome b; Validated
 5-379 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 521.57  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   5 LRKTHPILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLH 84
Cdd:MTH00022    3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  85 ANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEW 164
Cdd:MTH00022   83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 165 IWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLLLFLA 244
Cdd:MTH00022  163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 245 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRPLSQI 324
Cdd:MTH00022  243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2563084940 325 LFWTLISNIIILTWIGGQPVEDPFIIIGQIASTTYFIIFLILMPITAKMENLLMK 379
Cdd:MTH00022  323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 518.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   1 MTHNLRKTHPILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLI 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  81 RNLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTS 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 161 LVEWIWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLL 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 241 LFLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2563084940 321 LSQILFWTLISNIIILTWIGGQPVEDPFIIIGQIASTTYFIIFLILMPITAKMENLLMK 379
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 511.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   1 MTHNLRKTHPILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLI 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  81 RNLHANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTS 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 161 LVEWIWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLL 240
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 241 LFLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRP 320
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2563084940 321 LSQILFWTLISNIIILTWIGGQPVEDPFIIIGQIASTTYFIIFlILMPITAKMENLLMK 379
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYF-IISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 5-380 7.35e-136

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 392.76  E-value: 7.35e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940   5 LRKTHPILKIvnNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLH 84
Cdd:MTH00033    3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  85 ANGASMFFICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEW 164
Cdd:MTH00033   81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 165 IWGGFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLLLFLA 244
Cdd:MTH00033  161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 245 LFS--PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRPLS 322
Cdd:MTH00033  241 IEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTG 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2563084940 323 QILFWTLISNIIILTWIGGQPV-EDPFIIIGQIASTTYFIIFLILMPITAKMENLLMKW 380
Cdd:MTH00033  321 KFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLFYEY 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-374 1.44e-130

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 379.90  E-value: 1.44e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  12 LKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLHANGASMF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  92 FICLYLHIGRGLYYGSYMY-KE-TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEWIWGGF 169
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKpRElNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 170 SVDNATLTRFFTFH-FLLPFVIMGASMLHLLFLHETGSNNPTG----LTSNTDKIPFHPYYTYKDLLGATLLLLLLLFLA 244
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 245 LFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILILILVPMLHTSKQRGNAFRPLS 322
Cdd:COG1290   260 FFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2563084940 323 QILFWTLISNIIILTWIGGQPveDPFIIIGQIASTTYFIIFLILMPITAKME 374
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 13-367 1.74e-121

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 355.40  E-value: 1.74e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  13 KIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLHANGASMFF 92
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  93 ICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEWIWGGFSVD 172
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 173 NATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDlLGATLLLLLLLFLALFSPNLLG 252
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 253 DPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSkqrGNAFRPLSQILFWTLISN 332
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2563084940 333 IIILTWIGGQPVEDPFIIIGQIASTTYFIIFLILM 367
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 6.61e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 291.96  E-value: 6.61e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  10 PILKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  90 MFFICLYLHIGRGLYYGSYM--YKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEWIWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2563084940 168 GFSVDNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 12-369 7.21e-93

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 282.26  E-value: 7.21e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  12 LKIVNNSFIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLHANGASMF 91
Cdd:MTH00046    2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  92 FICLYLHIGRGLYYGSYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEWIWGGFSV 171
Cdd:MTH00046   82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 172 DNATLTRFFTFHFLLPFVIMGASMLHLLFLHETGSNNPTGLTSN-TDKIPFHPYYTYKDLLGATLLLLLLLFLALFSPNL 250
Cdd:MTH00046  162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 251 LGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVlALLFSILILILVPmlhtSKQRGNAFRPLSQILFWTLI 330
Cdd:MTH00046  242 VLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGL-VLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIV 316

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2563084940 331 SNIIILTWIGGQPVEDPFIIIGQIASttyfIIFLILMPI 369
Cdd:MTH00046  317 SLFFSLSYLGGCHPEYPYLLISQLFS----VLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 4.71e-91

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 271.56  E-value: 4.71e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  19 FIDLPAPSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLHANGASMFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  99 IGRGLYYG--SYMYKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEWIWGGFSVDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2563084940 177 TRFFTFHFLLPFVIMGASMLHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-355 9.62e-46

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 153.96  E-value: 9.62e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 208 NPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLLLFLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2563084940 288 KLGGVLALLFSILILILVPMLHTSKQRGNaFRPLSQILFWTLISNIIILTWIGGQPVEDPFIIIGQIA 355
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 2.84e-44

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 150.85  E-value: 2.84e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  89 SMFFICLYLHIGRGLYYGSYMYKE--TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 167 GGFSVDNATLTRFFTFHF-LLPFVIMGASMLHLLFLHETGSNNPTGLTSNTDKIPFHPYYTYKDLLGATLLLLLLLFLAL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2563084940 246 FSPNLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 8.04e-41

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 139.54  E-value: 8.04e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAFRPLSQILFWTLISNIIILTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2563084940 339 IGGQPVEDPFIIIGQIASTTY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 34-209 6.78e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 141.00  E-value: 6.78e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  34 FGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLHANGASMFFICLYLHIGRGLYYGSYMYKE- 112
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 113 -TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEWIWGGFSVDNATLTRFFTFH-FLLPFVI 190
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 2563084940 191 MGASMLHLLFLHETGSNNP 209
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 25-209 3.97e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 125.60  E-value: 3.97e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940  25 PSNISAWWNFGSLLGLCLIIQVLTGLFLAMHYTADISSAFSSVAHICRDVQYGWLIRNLHANGASMFFICLYLHIGRGLY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 105 YGSYMYKE--TWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYIGTSLVEWIWGGFSVDNATLTRFFTF 182
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 2563084940 183 H-FLLPFVIMGASMLHLLFLHETGSNNP 209
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 259-340 9.66e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 57.11  E-value: 9.66e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAF-RPLSQILFwtLISNIIILt 337
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVF--LFGTLVTL- 142


                  ...
gi 2563084940 338 WIG 340
Cdd:COG5679   143 WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-340 7.25e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.42  E-value: 7.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2563084940 259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAF-RPLSQILFwtLISNIIILt 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 2563084940 338 WIG 340
Cdd:TIGR01156 142 WLG 144
petD CHL00058
cytochrome b6/f complex subunit IV
 259-326 1.22e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 53.85  E-value: 1.22e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2563084940 259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILILVPMLHTSKQRGNAF-RPLSQILF 326
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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