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Conserved domains on  [gi|2567298425|gb|WMD53355|]
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parafibromin-like, partial [Panacea procilla]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CDC73_N super family cl24575
Paf1 complex subunit CDC73 N-terminal; CDC73_N is the N-terminal region of the members of ...
 1-75 6.55e-38

Paf1 complex subunit CDC73 N-terminal; CDC73_N is the N-terminal region of the members of CDC73_C, pfam05179. CDC73 forms part of the Paf1 post-initiation complex. The exact function within the complex is not known.


The actual alignment was detected with superfamily member pfam16050:

Pssm-ID: 464994  Cd Length: 301  Bit Score: 127.53  E-value: 6.55e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2567298425   1 RSLSEAMSVEKIAAIKAKRLAKKRTTIKSNDYSDTLGVvgsDLRAILDYDVDLTKDIISRERQWRTRTTVLQSNG 75
Cdd:pfam16050 173 KSLSEAMSVEKIAAIKAKRLAKKRTTIKKDDDDELTGL---ELRSFVDAEVDVTRDIISRERVWRTRTTVLQSAG 244
 
Name Accession Description Interval E-value
CDC73_N pfam16050
Paf1 complex subunit CDC73 N-terminal; CDC73_N is the N-terminal region of the members of ...
 1-75 6.55e-38

Paf1 complex subunit CDC73 N-terminal; CDC73_N is the N-terminal region of the members of CDC73_C, pfam05179. CDC73 forms part of the Paf1 post-initiation complex. The exact function within the complex is not known.


Pssm-ID: 464994  Cd Length: 301  Bit Score: 127.53  E-value: 6.55e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2567298425   1 RSLSEAMSVEKIAAIKAKRLAKKRTTIKSNDYSDTLGVvgsDLRAILDYDVDLTKDIISRERQWRTRTTVLQSNG 75
Cdd:pfam16050 173 KSLSEAMSVEKIAAIKAKRLAKKRTTIKKDDDDELTGL---ELRSFVDAEVDVTRDIISRERVWRTRTTVLQSAG 244
 
Name Accession Description Interval E-value
CDC73_N pfam16050
Paf1 complex subunit CDC73 N-terminal; CDC73_N is the N-terminal region of the members of ...
 1-75 6.55e-38

Paf1 complex subunit CDC73 N-terminal; CDC73_N is the N-terminal region of the members of CDC73_C, pfam05179. CDC73 forms part of the Paf1 post-initiation complex. The exact function within the complex is not known.


Pssm-ID: 464994  Cd Length: 301  Bit Score: 127.53  E-value: 6.55e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2567298425   1 RSLSEAMSVEKIAAIKAKRLAKKRTTIKSNDYSDTLGVvgsDLRAILDYDVDLTKDIISRERQWRTRTTVLQSNG 75
Cdd:pfam16050 173 KSLSEAMSVEKIAAIKAKRLAKKRTTIKKDDDDELTGL---ELRSFVDAEVDVTRDIISRERVWRTRTTVLQSAG 244
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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