NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2569162633|gb|WMI09238|]
View 

glutamate dehydrogenase e1, partial [Euphaedra neophron]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ELFV_dehydrog_N super family cl08368
Glu/Leu/Phe/Val dehydrogenase, dimerization domain;
109-145 4.39e-13

Glu/Leu/Phe/Val dehydrogenase, dimerization domain;


The actual alignment was detected with superfamily member pfam02812:

Pssm-ID: 460706 [Multi-domain]  Cd Length: 129  Bit Score: 61.64  E-value: 4.39e-13
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2569162633 109 DHILEIQFPLRRDSGDYEMILGYRAQHSSHRTPTKGG 145
Cdd:pfam02812   2 ERVIQVRVPVKMDDGEVEVFRGYRVQHNTALGPAKGG 38
GdhA super family cl33839
Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Glutamate ...
 60-145 1.47e-12

Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Glutamate dehydrogenase/leucine dehydrogenase is part of the Pathway/BioSystem: Glutamine biosynthesis


The actual alignment was detected with superfamily member COG0334:

Pssm-ID: 440103 [Multi-domain]  Cd Length: 411  Bit Score: 63.54  E-value: 1.47e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569162633  60 PRFFDMVEYFFHRACQVVEDKlvedmksrvsleekkkkvAGILQLMQPCDHILEIQFPLRRDSGDYEMILGYRAQHSSHR 139
Cdd:COG0334     2 PEFLQAVLEQLDSAAPVLGLD------------------PGILERLKEPERVIIVRVPVRMDDGSVQVFRGYRVQHNSAL 63


                  ....*.
gi 2569162633 140 TPTKGG 145
Cdd:COG0334    64 GPYKGG 69
 
Name Accession Description Interval E-value
ELFV_dehydrog_N pfam02812
Glu/Leu/Phe/Val dehydrogenase, dimerization domain;
109-145 4.39e-13

Glu/Leu/Phe/Val dehydrogenase, dimerization domain;


Pssm-ID: 460706 [Multi-domain]  Cd Length: 129  Bit Score: 61.64  E-value: 4.39e-13
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2569162633 109 DHILEIQFPLRRDSGDYEMILGYRAQHSSHRTPTKGG 145
Cdd:pfam02812   2 ERVIQVRVPVKMDDGEVEVFRGYRVQHNTALGPAKGG 38
GdhA COG0334
Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Glutamate ...
 60-145 1.47e-12

Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Glutamate dehydrogenase/leucine dehydrogenase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440103 [Multi-domain]  Cd Length: 411  Bit Score: 63.54  E-value: 1.47e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569162633  60 PRFFDMVEYFFHRACQVVEDKlvedmksrvsleekkkkvAGILQLMQPCDHILEIQFPLRRDSGDYEMILGYRAQHSSHR 139
Cdd:COG0334     2 PEFLQAVLEQLDSAAPVLGLD------------------PGILERLKEPERVIIVRVPVRMDDGSVQVFRGYRVQHNSAL 63


                  ....*.
gi 2569162633 140 TPTKGG 145
Cdd:COG0334    64 GPYKGG 69
 
Name Accession Description Interval E-value
ELFV_dehydrog_N pfam02812
Glu/Leu/Phe/Val dehydrogenase, dimerization domain;
109-145 4.39e-13

Glu/Leu/Phe/Val dehydrogenase, dimerization domain;


Pssm-ID: 460706 [Multi-domain]  Cd Length: 129  Bit Score: 61.64  E-value: 4.39e-13
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2569162633 109 DHILEIQFPLRRDSGDYEMILGYRAQHSSHRTPTKGG 145
Cdd:pfam02812   2 ERVIQVRVPVKMDDGEVEVFRGYRVQHNTALGPAKGG 38
GdhA COG0334
Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Glutamate ...
 60-145 1.47e-12

Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Glutamate dehydrogenase/leucine dehydrogenase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440103 [Multi-domain]  Cd Length: 411  Bit Score: 63.54  E-value: 1.47e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2569162633  60 PRFFDMVEYFFHRACQVVEDKlvedmksrvsleekkkkvAGILQLMQPCDHILEIQFPLRRDSGDYEMILGYRAQHSSHR 139
Cdd:COG0334     2 PEFLQAVLEQLDSAAPVLGLD------------------PGILERLKEPERVIIVRVPVRMDDGSVQVFRGYRVQHNSAL 63


                  ....*.
gi 2569162633 140 TPTKGG 145
Cdd:COG0334    64 GPYKGG 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH