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Conserved domains on  [gi|2621607563|gb|WPF71123|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Dicaeum vulneratum]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.08e-171

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 478.93  E-value: 6.08e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   1 MNPQAKLVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  81 TGQWDITQMTHPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLNSTLLTMLAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 161 SAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVKLSTLMTTWTKTPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 241 NTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYCTMITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 2621607563 321 INPMIAPLVTLSMILLPIAPIVYTIP 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.08e-171

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 478.93  E-value: 6.08e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   1 MNPQAKLVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  81 TGQWDITQMTHPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLNSTLLTMLAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 161 SAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVKLSTLMTTWTKTPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 241 NTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYCTMITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 2621607563 321 INPMIAPLVTLSMILLPIAPIVYTIP 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-298 6.09e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 116.37  E-value: 6.09e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  15 LGTTITVSSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAWhTGQWDITQMTHP 92
Cdd:COG1007   113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  93 IS------------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMK----FPPLTLLYMTSPSLNSTLLTM 156
Cdd:COG1007   192 LAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAADWQLL 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 157 LAILSAA---LGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTL--LNFYL--YSVMTAAVFLTLNSIK-----A 224
Cdd:COG1007   272 LAVLAVLsmtVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkggeA 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2621607563 225 VKLSTLMTTWTKTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAY 298
Cdd:COG1007   352 EEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-297 1.25e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.96  E-value: 1.25e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  15 LGTTITVSSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQMTHPI 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  94 SCLILT------------SAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMK---FPPLTLLYMTSPS----LNSTLL 154
Cdd:TIGR01770 193 SNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 155 TMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLN--FYL--YSVMTAAVFLTLNSIKAVK---- 226
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewi 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2621607563 227 --LSTLMTTWTKTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLA 297
Cdd:TIGR01770 353 eyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 8.93e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.92  E-value: 8.93e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  23 SNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQM-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  91 HPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLIL-STLMKFPPLTLLYMTSPSLNST-----LLTMLAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 165 GGWMGLNQTQIRKILAFSSIAHLGWM----AIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVKLST-----LMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMlialGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2621607563 236 KTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.08e-171

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 478.93  E-value: 6.08e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   1 MNPQAKLVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  81 TGQWDITQMTHPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLNSTLLTMLAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 161 SAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVKLSTLMTTWTKTPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 241 NTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYCTMITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 2621607563 321 INPMIAPLVTLSMILLPIAPIVYTIP 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-345 6.09e-139

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 398.02  E-value: 6.09e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   1 MNPQAKLVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  81 TGQWDITQMTHPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSlNSTLLTMLAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 161 SAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVKLSTLMTTWTKTPAL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 241 NTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYCTMITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*.
gi 2621607563 321 INPM-IAPLVTLSMILLPIAPIVYTI 345
Cdd:MTH00135  320 QLTLpLAISTTATLMLLPLTPAILAL 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 9.49e-138

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 394.67  E-value: 9.49e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   1 MNPQAKLVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  81 TGQWDITQMTHPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLNSTLLTMLAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 161 SAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVKLSTLMTTWTKTPAL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 241 NTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYCTMITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*
gi 2621607563 321 INPMIAPLVTLSMILLPIAPIVYTI 345
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 4.63e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 352.61  E-value: 4.63e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   1 MNPQAKLVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  81 TGQWDITQMTHPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLNSTLLTMLAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 161 SAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVKLSTLMTTWTKTPAL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 241 NTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYCTMITLPPhTTNHMK-QWH-TH 318
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                         330       340
                  ....*....|....*....|....*..
gi 2621607563 319 KPINPMIAPLVTLSMILLPIAPIVYTI 345
Cdd:MTH00105  320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 2.37e-100

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 299.96  E-value: 2.37e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   1 MNPQAKLVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  81 TGQWDITQMTHPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLNSTLLTMLAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 161 SAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVKLSTLMTTWTKTPAL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 241 NTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYCTMITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 2621607563 321 INPMIAPLVTLSMILLPIAPIVYTIP 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-338 1.13e-82

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 254.86  E-value: 1.13e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   1 MNPQAKLVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  81 TGQWDITQMTHPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLNSTLLTMLAIL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 161 SAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVKLSTLMTTWTKTPAL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 241 NTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYCTMITLPPHTTNHMKQW----- 315
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWrnsgn 320

                         330       340
                  ....*....|....*....|....
gi 2621607563 316 -HTHKPINPMIAPLVTLSMILLPI 338
Cdd:MTH00041  321 iTVYGVILSILSSISILGLLLIPL 344
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-334 1.79e-60

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 196.97  E-value: 1.79e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   1 MNPQAKLVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  81 tgqwdITQMTHPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTspsLNSTLLTMLAIL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 161 SAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVKLSTLMTTWTKTPAL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 241 NTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYCTMItlpphTTNHMKQWHTHKP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLM-----LNYNKNKWNLKKK 307

                         330
                  ....*....|....
gi 2621607563 321 INPMIAPLVTLSMI 334
Cdd:MTH00160  308 KNKFSLILNFLSFI 321
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 1.10e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 166.21  E-value: 1.10e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   5 AKLVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  85 DITqmthpiscLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLN-STLLTMLAILSAA 163
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWlAYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 164 LGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLYSVMTAAVFLTLNSiKAVKLSTLMTTWTKTPALNTM 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2621607563 244 LLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYCTMI 302
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-337 1.14e-47

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 163.80  E-value: 1.14e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   7 LVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSmtnawhTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  87 TQMTHPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLNSTLLTMLAILSAALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 167 WMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVKLSTLMTTWTKTPALNTMLLL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 247 TLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYCTMiTLPPHTTNhmKQWHTHKPINPMIA 326
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFM-YLSPTFSS--LKSAPYEPKTKILI 319

                         330
                  ....*....|.
gi 2621607563 327 PLVTLSMILLP 337
Cdd:MTH00011  320 SMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-345 1.33e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 144.81  E-value: 1.33e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   8 VFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  88 qMTHPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLymTSPSLNSTLLTMLAILSAALGGW 167
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 168 MGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVKLSTLMTTWTKTPALNTMLLLT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 248 LLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYCTMITLPPHTTNHMKqwhthkpINPMIAP 327
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK-------INLLYSG 305

                         330
                  ....*....|....*...
gi 2621607563 328 LVTLSMILLPIAPIVYTI 345
Cdd:MTH00197  306 LFILLMMMLPLLMIFTMI 323
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-298 6.09e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 116.37  E-value: 6.09e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  15 LGTTITVSSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAWhTGQWDITQMTHP 92
Cdd:COG1007   113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  93 IS------------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMK----FPPLTLLYMTSPSLNSTLLTM 156
Cdd:COG1007   192 LAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAADWQLL 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 157 LAILSAA---LGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTL--LNFYL--YSVMTAAVFLTLNSIK-----A 224
Cdd:COG1007   272 LAVLAVLsmtVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkggeA 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2621607563 225 VKLSTLMTTWTKTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAY 298
Cdd:COG1007   352 EEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
15-296 1.41e-26

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 109.53  E-value: 1.41e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  15 LGTTITVSSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQMTHPI 93
Cdd:PRK05777  114 LGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKAL 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  94 S------------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMK---FPPLT-LLYMTSPSL---NSTLL 154
Cdd:PRK05777  194 AdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLsedWQQVL 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 155 TMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTL--LNFYL--YSVMTAAVFLTLNSIK-----AV 225
Cdd:PRK05777  274 AIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeAE 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2621607563 226 KLSTLMTTWTKTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRL 296
Cdd:PRK05777  354 SISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-296 4.52e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 106.65  E-value: 4.52e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  15 LGTTITVSSNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFS-------------SMTNAWH 80
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  81 TGQWDITQMTHPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLNstLLTMLAIL 160
Cdd:MTH00196   84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGGLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 161 SAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHP----KLTLLNFYLYSVMTAAVFLTLNSIKAVK--LSTLMTTW 234
Cdd:MTH00196  162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLS 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2621607563 235 TKTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRL 296
Cdd:MTH00196  242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-297 1.25e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.96  E-value: 1.25e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  15 LGTTITVSSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQMTHPI 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  94 SCLILT------------SAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMK---FPPLTLLYMTSPS----LNSTLL 154
Cdd:TIGR01770 193 SNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 155 TMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLN--FYL--YSVMTAAVFLTLNSIKAVK---- 226
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewi 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2621607563 227 --LSTLMTTWTKTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLA 297
Cdd:TIGR01770 353 eyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 8.93e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.92  E-value: 8.93e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  23 SNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQM-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  91 HPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLIL-STLMKFPPLTLLYMTSPSLNST-----LLTMLAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 165 GGWMGLNQTQIRKILAFSSIAHLGWM----AIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVKLST-----LMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMlialGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2621607563 236 KTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 15-267 1.08e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 95.47  E-value: 1.08e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  15 LGTTITVSSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDI----TQM 89
Cdd:MTH00199  108 LGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSIL 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  90 THPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLNSTLLTmlAILSAALGGWMG 169
Cdd:MTH00199  188 TGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGA 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 170 LNQTQIRKILAFSSIAHLGW----MAIVITYHPKLTLLNFYLYSVMTAAVFLTLNSIKAVK--LSTLMTTWTKTPALNTM 243
Cdd:MTH00199  266 LNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIALT 345

                         250       260
                  ....*....|....*....|....
gi 2621607563 244 LLLTLLSLAGLPPLTGFLPKWLIV 267
Cdd:MTH00199  346 LALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-296 3.03e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 85.20  E-value: 3.03e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  13 LMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQMTHP 92
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  93 IS----------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLM---------KFppLTLLYMTSPSLN-ST 152
Cdd:COG0651   196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtkvgvyailRV--LTLLFGADPALFlGT 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 153 LLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLY----SVMTAAVFLTLNSI----KA 224
Cdd:COG0651   274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIeratGT 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2621607563 225 VKLSTLMTTWTKTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRL 296
Cdd:COG0651   354 RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-296 2.39e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 82.98  E-value: 2.39e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   3 PQAKLVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASTLVLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  74 SMTNAWHTGQ--------------WDITQMTHPISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPL 139
Cdd:MTH00198  267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 140 TLLymTSPSLNSTLLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLYSVM----TAAV 215
Cdd:MTH00198  347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsALAS 424

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 216 FLTLNSIKAV---------------------KLSTLMTTWTKTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQD 274
Cdd:MTH00198  425 FTVICTLEEFgtrtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIA 504

                         330       340
                  ....*....|....*....|....*....
gi 2621607563 275 MAPAATIMALLSLLGL-------FFYLRL 296
Cdd:MTH00198  505 FSSSLSIYYLVALFAIictcisaFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-342 5.20e-14

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 72.73  E-value: 5.20e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   7 LVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASTLVL--FSSM--TNAWHT 81
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  82 GQWDI------TQMTHPISCLI----LTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTL----LYMTSP 147
Cdd:CHL00049  194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFY 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 148 SLNS---TLLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVIT-------YHPKLTLLNFYLysvmtaavFL 217
Cdd:CHL00049  274 FSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYI--------FM 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 218 TLNSIKAVKLSTLMT----------TWTKTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSL 287
Cdd:CHL00049  346 NLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSV 425

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2621607563 288 LGLFFYLRLAYCTMITLPPHTTNHMKQwhthKPINPMIAP-LVTLSMILLPIAPIV 342
Cdd:CHL00049  426 ISIYYYLKIIKLLMTGRNQEITPYVRN----YRRSPLRSNnSIELSMIVCVIASTI 477
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 1.01e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 65.84  E-value: 1.01e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  50 PRAIEAATKYFLVQAAASTLVLF-SSMTNAWHTGQWDITQMTHP----------ISCLILTSAISMKLGLVPFHFWFPEV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALAlitspslglaLALVFVIAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 119 LQGSPLTTSLILSTLMKFP----PLTLLYMTSPSLNS---TLLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMA 191
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316


                  .
gi 2621607563 192 I 192
Cdd:PRK02504  317 I 317
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-334 1.94e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 61.82  E-value: 1.94e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFS-----SMTNAWHTGqwDITQMTHPISCL-----ILTSAI 102
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllyGVTGTLNMA--DLAGALAENPTVvtafgFVLLAL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 103 SMKLGLVPFHFWFPEVLQGSPLTTSLILS-----------TLMKFPPLTLLYMTSPSLNsTLLTMLAILSAALGGWMGLN 171
Cdd:PRK08375  213 ALKAAVFPLHTWLPRAYPAAPPVVTALLSglvtkvavyalIRIYFTVFGGDFRFALGLG-WLLAVLALLSMLVGSLAALG 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 172 QTQIRKILAFSSIAHLGWM--AIVITYHPKLTLLNFYL--YSVMTAAVFLTLNSI----KAVKLSTLMTTWTKTPALNTM 243
Cdd:PRK08375  292 QDDVKRVLAYSTVSQMGYIllGLALLTPLALAAGLLHLlhHALMKGALFLAAGAIevtyGTRRLSELSGLGRRMPLTAAA 371

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 244 LLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYCTMITLPPHTTNHmkqwHTHKPINP 323
Cdd:PRK08375  372 FAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEA----PKQEAPLG 447

                         330
                  ....*....|.
gi 2621607563 324 MIAPLVTLSMI 334
Cdd:PRK08375  448 MLAPSLALALL 458
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-345 8.78e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 56.64  E-value: 8.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSmtnAWHTGQWDITQM-------------THPISCLIL 98
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMaylavkmsenptvVAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  99 TSAISMKLGLVPFHFWFPEVLQGSP--LTTSLILSTLMKFPPL--TLLYMTSPSLNST----LLTMLAILSAALGGWMGL 170
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 171 NQTQIRKILAFSSIAHLGWM------AIVITYHPKLT----------LLNFYLYSVMTAAVFLTLNSIKAV-------KL 227
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTAGAVIYEtgtrnlnEL 386

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 228 STLMTTWTKTpalNTMLLLTLLSLAGLPPLTGFLPKWLIVQelTKQDMAPAATIMALL-SLLGLFFYLRLAYcTMITLPP 306
Cdd:PRK08376  387 GGLARTMPKT---TIAFLIGAAAIVGLPPFNGFASKWLIYE--SSALFNPILGVIAMIgSVLTLASFVKVFH-TAFFGPP 460

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2621607563 307 HTTNHMKQwhthKPINPMIAPlvtlsMILLPIAPIVYTI 345
Cdd:PRK08376  461 SEKVMNVK----EPPKPMLVP-----MLILAIAIIGMGL 490
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-294 2.12e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 55.77  E-value: 2.12e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   2 NPQAKLVFVASLMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHpRAIEAATKYFLVQAAASTLVLFSSMTNAWHT 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  82 GQWDIT-------QMTHPISCLI----LTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILS-------------TLMKFP 137
Cdd:PRK08668  175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSgqlsklgaygfllVLYVLP 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 138 PLTLL-----YMTSPSLNsTLLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYhpkLTLLNFY--LYSV 210
Cdd:PRK08668  255 GTKLFsefgtYRGVPLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGL---GTSLGFAggLFHV 330

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 211 MTAAVFLTLN--SIKAVKLSTLMTTWT-------KTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMaPAATI 281
Cdd:PRK08668  331 FNHALFKGLFflIFAAVIYRTGTTKISemgglieKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM-PITAF 409

                         330
                  ....*....|...
gi 2621607563 282 MALLSLLGLFFYL 294
Cdd:PRK08668  410 MAFFGSIGSFLYV 422
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-194 2.30e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 55.47  E-value: 2.30e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  49 HPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW--DITQ-MTHPIS-------CLILTSAISMKLGLVPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAElAAAPLPltaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 119 LQGSPLTTSLILS-TLMK----------FP--PLTLLYMtspslnSTLLTMLAILSAALGGWMGLNQTQIRKILAFSSIA 185
Cdd:COG1008   236 HVEAPTAGSVLLAgVLLKmggygllrfaLPlfPEASAYF------APLLAALGVIGIIYGALVALAQTDLKRLIAYSSVS 309


                  ....*....
gi 2621607563 186 HLGWMAIVI 194
Cdd:COG1008   310 HMGFVLLGI 318
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-332 6.25e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 54.00  E-value: 6.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   7 LVFVASlMLGTtitVSSNHWIMAWAGLEINTLAILPLISKSHH-PRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWD 85
Cdd:COG1009   118 LLFMAA-MLGL---VLSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  86 ITQMTH------------PISCLILTSAISmKLGLVPFHFWFPEVLQGsPLTTSLIL--ST--------LMKFPPLtllY 143
Cdd:COG1009   194 FSELLAaaptilssplltLILLLLLLGAFG-KSAQFPLHFWLPDAMEG-PTPVSALLhaATmvkagvylLARLSPL---F 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 144 MTSPSLNSTLLTmLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITyhpkltllnfylYSVMTAAVFLTLNS-- 221
Cdd:COG1009   269 ALSPVWLTVVAI-IGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALG------------VGAYVAALFHLLTHaf 335

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 222 ------------IKAV------KLSTLmttWTKTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQE-LTKQDMAPAATIM 282
Cdd:COG1009   336 fkallflgagsvIHATgtrdirKMGGL---RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAV 412

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2621607563 283 ALLSLLGLFFY-LRLAYCTMITLPPHTTNHmkqwHTHKPINPMIAPLVTLS 332
Cdd:COG1009   413 ALLGAFLTAFYsFRLFFLVFFGKPRPKTPK----HPHESPWLMTLPLVVLA 459
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 8.22e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 53.40  E-value: 8.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  50 PRAIEAATKYFLVQAAASTLVLFSSMTNAW-HTGQWDITQ-MTHPISC-------LILTSAISMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLElLNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 121 GSPLTTSLILS-TLMKFPPLTLLYMTSPSLN------STLLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIV 193
Cdd:TIGR01972 232 EAPTAGSVILAgVLLKMGTYGFLRFNLPLFPdaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311


                  .
gi 2621607563 194 I 194
Cdd:TIGR01972 312 I 312
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 1.81e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 47.25  E-value: 1.81e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2621607563 291 FFYLRLAYCTMITLPPHTTNHMKQWHTHKP-INPMIAPLVTLSMILLPIAP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTkNTLLLPTLTTLSILLLPLTP 51
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 8.26e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 50.50  E-value: 8.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFS-----SMTNAWHTGqwDITQMTHP--------ISCLILT 99
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 100 SAISMKLGLVPFHFWFPEVLQGSPLTTSLILS----TLMKFPPLTLLY--------MTSPSLNSTLLTmLAILSAALGGW 167
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIVYdvfkanfvFTTLPFNNVFMI-LAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 168 MGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLY----SVMTAAVFLTLNSIK----AVKLSTLMTTWTKTPA 239
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                         250       260
                  ....*....|....*....|....*...
gi 2621607563 240 LNTMLLLTLLSLAGLPPLTGFLPKWLIV 267
Cdd:PRK12662  376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 13-192 2.09e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 49.16  E-value: 2.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  13 LMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYF---------------LVQAAASTLVLFSSMTN 77
Cdd:PRK06458  117 FLFTMLLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGDGEMAI 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  78 AW-----HTGQWDITQMThpISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYM-------- 144
Cdd:PRK06458  197 LWtellkHASLLDPTLMK--LAFVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRyyilidaa 274

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2621607563 145 TSPSLNSTLLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAI 192
Cdd:PRK06458  275 IGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 3.78e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.60  E-value: 3.78e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  13 LMLGTTITVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------STLVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  87 TQMTHP----------ISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILS-TLMKFPPLTLLYMTS-------PS 148
Cdd:PRK08676  191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSgTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2621607563 149 LNSTLLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVI 194
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-222 6.47e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 44.56  E-value: 6.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  92 PISCLILTSAI--SMKLGLvpfHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLNSTLLTMLAI-----LSAAL 164
Cdd:MTH00032  226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFF 302

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 165 GGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYL--YSVMTAAVFLTLNSI 222
Cdd:MTH00032  303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGSV 362
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
53-298 8.95e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.17  E-value: 8.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  53 IEAATKYFLVQAAASTLVL---------FSSMTNAWHTGQWDITQMTHPISCL--ILTSAISMKLGLVPFhFWFPEVLQG 121
Cdd:PRK12663  157 LRGAIKYVVLNLIGSWLFLlgigllygtFGTLNMAHIAMRLNDMGDTATLTTIalLFLLAFGMKAALFPF-MWLPAAYHT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 122 SPLTTSLILSTLMK-------FPPLTLLYMTSPSLNSTLLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVI 194
Cdd:PRK12663  236 PNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGL 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 195 TYHPKLTLLN--FYLYSVMT--AAVFLTLNSIKAV----KLSTLMTTWTKTPALNTMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12663  316 ALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLL 395

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2621607563 267 VQ---ELTKQDMAPAATIMALLSLLGLFFYLRLAY 298
Cdd:PRK12663  396 VQgalDNGAYILLALMLITSLITMYSLFRIFFLAY 430
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-333 1.28e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 43.91  E-value: 1.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  95 CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSP-----SLNSTLLTMLAILSAALGGWMG 169
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfeqaPLALIIVTIVGSLTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 170 LNQTQIRKILAFSSIAHLGWMAIVI-TYHPKLTLLNFYLYSVMTAAVFLTLNS-IKAV-------KLSTLMTTwtkTPAL 240
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSvIHALsdeqdmrKMGGLISF---LPLT 369

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 241 NTMLLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLS-LLGLFFYLRLAYCTMITLPPHTTNHMKqwHTHK 319
Cdd:MTH00020  370 YIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSIRLIYLTFLSNTNLKKAVFF--HLHE 447

                         250
                  ....*....|....
gi 2621607563 320 PINPMIAPLVTLSM 333
Cdd:MTH00020  448 GDWNLLLPLGILAL 461
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-194 2.24e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.99  E-value: 2.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  96 LILTSAISmKLGLVPFHFWFPEVLQG-SPLTTSLILSTLMK-----FPPLTLLYMTSPSLNSTLLTmLAILSAALGGWMG 169
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAApTPVSAYLHAAAMVKagiylVARLAPGFADVPVWRPTVLV-LGLATMLLGGWRA 285

                          90       100
                  ....*....|....*....|....*
gi 2621607563 170 LNQTQIRKILAFSSIAHLGWMAIVI 194
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLV 310
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 2.73e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 42.50  E-value: 2.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  50 PRAIEAATKYFLVQAAASTLVLFSSMTNAWH----TGQWDITQ-MTHPISC-------LILTSAISMKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADlLNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 118 VLQGSPLTTSLILS-TLMK-------------FPPLTLLYmtspslnSTLLTMLAILSAALGGWMGLNQTQIRKILAFSS 183
Cdd:PRK05846  237 AHVQAPTAGSVLLAgILLKmgaygllrfslplFPDASHEF-------APIIITLGVIAIIYGALVALAQTDIKKLIAYSS 309

                         170
                  ....*....|.
gi 2621607563 184 IAHLGWMAIVI 194
Cdd:PRK05846  310 ISHMGFVTLGI 320
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-345 3.05e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 42.51  E-value: 3.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  48 HHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQMTHPIS---------------CLILTSAISmKLGLVPFH 112
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGAAA-KSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 113 FWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLNST-----LLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHL 187
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 188 GWMAIVITY----HPKLTLL--NFYL--YSVMTAAVFLtLNSIKAVKLST-----LMTTWTKTPALNTMLLLTLLSLAGL 254
Cdd:PRK12649  315 AYLMTMYGYttyhEPGLGVAaaTFHLlnHATFKACLFL-VAGIVAHEAATrdirkLGGLRKEMPITFIVASIAALAMAGI 393

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 255 PPLTGFLPKWLIVQ---ELTKQDMAPAATIMALLSLLG--LFFYLRLAYCTMITLPPHTTNHMKQwHTHKPINPMIAPLV 329
Cdd:PRK12649  394 PPLNGFLSKEMFYEtsvEMGALIGGPFTIIIPAVAVLGgvFTFAYSIKLIDGIFLGERTHDHLPH-HIHEAPYVMLIPAA 472

                         330       340
                  ....*....|....*....|.
gi 2621607563 330 TLSMI-----LLPIAPIVYTI 345
Cdd:PRK12649  473 FLAGLvilfgLVPSIPIHNII 493
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 101-197 3.32e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 42.36  E-value: 3.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 101 AISMKLGLVPFHFWFPEVLQGSPLTTSLILS-TLMKFPPLTLLYMTSPSLN------STLLTMLAILSAALGGWMGLNQT 173
Cdd:MTH00204  218 SLAVKIPQIPFHIWLPQAHVEAPVAGSVILAgILLKLGGYGFLRFSWPLFPaaseyfAPLIVMLSVIAVIYGSLTTCRQV 297

                          90       100
                  ....*....|....*....|....
gi 2621607563 174 QIRKILAFSSIAHLGWMAIVITYH 197
Cdd:MTH00204  298 DFKRLIAYSSVAHMGLVPLGLFTH 321
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 3.99e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.99  E-value: 3.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  55 AATKYFLVQAAASTLVLFSSMTNAWHTGQWDI---TQMTH--PISCLILTSA-----ISMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHtlPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 124 LTTSLILSTLMKFPPLTLL------YMTSPSLNSTLLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYH 197
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                  ....*.
gi 2621607563 198 PKLTLL 203
Cdd:PRK06473  318 TPLSIL 323
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-306 4.02e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.94  E-value: 4.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  34 EINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQM-----THPISCLILTSAISMKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIhnallVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 109 V------PFHFWFPEVLQGSPLTTSLILSTLMKFPPLTL------LYMTSPSLNS--TLLTMLAILSAALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmlvifkLFGGLSYFPSaqGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 175 IRKILAFSSIAHLGWMAIVITYHPKLTL-------LNFYLYsvmTAAVFLTLNSI----KAVKLSTLMTTWTKTPALNTM 243
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIY---KSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFM 366

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2621607563 244 LLLTLLSLAGLPPLTGFLPKWLIVQELTKQDMAPAATIMALLSLLGLFFYLRLAYctMITLPP 306
Cdd:PRK06277  367 VLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIYLKP 427
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-188 5.20e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.03  E-value: 5.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  59 YFLVQAAASTLVLFSSMTNAW-HTGQWDITQMTHP-----ISCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTSLILST 132
Cdd:PRK08667  166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSG 245

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2621607563 133 LMKFPPL-----TLLYMTSPSLNSTLLTMLA-ILSAALGGWMGLNQTQIRKILAFSSIAHLG 188
Cdd:PRK08667  246 VMLKVAVyglvrFLMDVLSPELWWGVLILLAgSISALLGVIYALKEHDLKGLLAYSSIENIG 307
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-197 6.08e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.45  E-value: 6.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 101 AISMKLGLVPFHFWFPEVLQGSPLTTSLILS-TLMKFPPLTLLYMTSPSLN------STLLTMLAILSAALGGWMGLNQT 173
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAgILLKLGGYGLVRLSWPILPlgaqnlAPAVIAMGIVGIVYGSFATCRQI 318

                          90       100
                  ....*....|....*....|....
gi 2621607563 174 QIRKILAFSSIAHLGWMAIVITYH 197
Cdd:MTH00226  319 DVKRLVAYSSVAHMGLVSITLVTH 342
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 7.95e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.17  E-value: 7.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  55 AATKYFLVQAAASTLVLFSSMTNAWHTGQ--WDITQMTH---PISCLILTS-----AISMKLGLVPFHFWFPEVLQGSPL 124
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDAHGEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2621607563 125 TTSLILS-TLMKFPPLTLLYMTSPSLNST------LLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVI 194
Cdd:PRK12561  218 PVSMILAgVLLKMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 2.03e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.01  E-value: 2.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  52 AIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQMTHPISCLILTSAISMKLGLV----------------PFHFWF 115
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 116 PEVLQGSPLTTSLILSTLMKFPPLTLLYMTSPSLNSTLLTMLAI-----LSAALGGWMGLNQTQIRKILAFSSIAHLGWM 190
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPVFEQFPAVMTVIawtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-203 2.78e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 39.31  E-value: 2.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  55 AATKYFLVQAAASTLVLFSSMTNAWHTGQWD------ITQMTHPISCLILTSAI----SMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 124 LTTSLILSTLMKFPPLTL------LYMTSPSLNSTLLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYH 197
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317


                  ....*.
gi 2621607563 198 PKLTLL 203
Cdd:PRK07363  318 TQLSLL 323
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 7-289 4.06e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 39.13  E-value: 4.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563   7 LVFVASlMLGTtitVSSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWH-TGQWD 85
Cdd:PRK12647  102 LLFMAS-MLGL---VLSDNLITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGLALLAGLILLGNvTGTYS 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  86 ITQMTH------------PISCLILTSAISmKLGLVPFHFWFPEVLQG-SPLTTSLILSTLMKfPPLTLLYMTSPSLNST 152
Cdd:PRK12647  178 LSELLAsgdvirehplylAILLLVLGGAFT-KSAQFPFHFWLPNAMEApTPVSAYLHSATMVK-AGIYLLARLNPVLGGT 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 153 -----LLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLNFYLY----SVMTAAVFLTLNSIK 223
Cdd:PRK12647  256 plwqtILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIID 335

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2621607563 224 -------AVKLSTLmttWTKTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVQELTkqDMAPAATIMALLSLLG 289
Cdd:PRK12647  336 hetgtrdITKLGGL---RRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK12650 PRK12650
DUF4040 family protein;
80-194 5.81e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.49  E-value: 5.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  80 HTGQW-DITQMTHPISCLILTSAISmKLGLVPFHFWFPEVLQG-SPLTTSLILSTLMKfPPLTLLYMTSPSLNST----- 152
Cdd:PRK12650  196 HSDVWaEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVK-AGIYLLLRFSPVFHDVavwnw 273

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2621607563 153 LLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIVI 194
Cdd:PRK12650  274 LLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATI 315
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-190 6.14e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.53  E-value: 6.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  18 TITVSSNHW---IMAWA--GLEINTLailpLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDI------ 86
Cdd:PRK08168  114 HLLVLSDHLlvlIAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLsalwah 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  87 --TQMTHP---ISCLILTSAISMKLGLVPFHFWFPEVLQgSPLTTSLILST---------LMKFPPLTLLymtSPSLNsT 152
Cdd:PRK08168  190 laAQGASPslqAAALLLVLAVILKTAQLPVHGWLIQVME-APTPVSALLHAgvvnlggfvLIRFAPLLEQ---APPAR-W 264

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2621607563 153 LLTMLAILSAALGGWMGLNQTQIRKILAFSSIAHLGWM 190
Cdd:PRK08168  265 LLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 101-219 6.68e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 38.11  E-value: 6.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 101 AISMKLGLVPFHFWFPEVLQGSPLTTSLILS-TLMKFPPLTLLYMTSPSLN------STLLTMLAILSAALGGWMGLNQT 173
Cdd:MTH00217  215 SLAIKIPKIPFHIWLPQAHVEAPVAGSVILAgVLLKLGGYGFIRFSWPLLPeaseyfSPLIQTLSLLAIIYGSLTTCRQV 294

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2621607563 174 QIRKILAFSSIAHLGWMAIVITYHPKLTLLnfylysvmtAAVFLTL 219
Cdd:MTH00217  295 DLKRIIAYSSVAHMGLVTLGIFSHTIQGLV---------AAIFLML 331
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 93-303 9.58e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 37.68  E-value: 9.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563  93 ISCLILTSAI--SMKLGLvpfHFWFPEVLQGSPLTTSLILSTLMKFPPLTLLYMTSP-----SLNSTLLTMLAILSAALG 165
Cdd:MTH00210  213 ICLLLFIGAVgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPlfegsPLALTIVTILGALTAFFA 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 166 GWMGLNQTQIRKILAFSSIAHLGWMAIVITYHPKLTLLnFYL--YSVMTAAVFLTLNS-IKAV-------KLSTLMTTwt 235
Cdd:MTH00210  290 ATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSL-FHLmnHAFFKALLFLSAGSvIHAVsdeqdmrKMGGLIKS-- 366

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2621607563 236 kTPALNTMLLLTLLSLAGLPPLTGFLPKWLIVqELT--KQDMAPAATIMALLSLLGLFFYLRLAYCTMIT 303
Cdd:MTH00210  367 -IPFTYVMILIGSLSLMGFPYLTGFYSKDLIL-ELTydKYYIAFAYWLGSFSALLTAFYSIRLIYLTFIT 434
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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