NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446064569|ref|WP_000142424|]
View 

MULTISPECIES: DUF6404 family protein [Gammaproteobacteria]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF6404 pfam19942
Family of unknown function (DUF6404); This entry represents a member of a biosynthetic gene ...
 1-114 6.85e-37

Family of unknown function (DUF6404); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001055) is described by MIBiG as an example of the following biosynthetic classes, NRP (non-ribosomal peptide) and polyketide, in particular the yersiniabactin biosynthetic gene cluster from Escherichia coli. This family appears to be predominantly found in Proteobacteria.


:

Pssm-ID: 437774  Cd Length: 115  Bit Score: 121.23  E-value: 6.85e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446064569    1 MTFEQKKARAIALMDSKKMWRSNYAPPLLCILWRLGIRLPPLPFMPFWQVTLLMGSLWGISWGCAMWFIYRGPSGMVAGE 80
Cdd:pfam19942   1 MSFEEKLERALAELEAKGIWRSNYAPPLHRLLWKLGFKVPPPHYASFWQNFLLFGLFFGVVWGLFMWFLVWQGQGMPPGA 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 446064569   81 AIIISITGGFLFGLLTASFHWWRRKVNRLPPWGD 114
Cdd:pfam19942  81 AVAASLLAGVLFGLIMAGYYRWRRRKLGLPDWED 114
 
Name Accession Description Interval E-value
DUF6404 pfam19942
Family of unknown function (DUF6404); This entry represents a member of a biosynthetic gene ...
 1-114 6.85e-37

Family of unknown function (DUF6404); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001055) is described by MIBiG as an example of the following biosynthetic classes, NRP (non-ribosomal peptide) and polyketide, in particular the yersiniabactin biosynthetic gene cluster from Escherichia coli. This family appears to be predominantly found in Proteobacteria.


Pssm-ID: 437774  Cd Length: 115  Bit Score: 121.23  E-value: 6.85e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446064569    1 MTFEQKKARAIALMDSKKMWRSNYAPPLLCILWRLGIRLPPLPFMPFWQVTLLMGSLWGISWGCAMWFIYRGPSGMVAGE 80
Cdd:pfam19942   1 MSFEEKLERALAELEAKGIWRSNYAPPLHRLLWKLGFKVPPPHYASFWQNFLLFGLFFGVVWGLFMWFLVWQGQGMPPGA 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 446064569   81 AIIISITGGFLFGLLTASFHWWRRKVNRLPPWGD 114
Cdd:pfam19942  81 AVAASLLAGVLFGLIMAGYYRWRRRKLGLPDWED 114
 
Name Accession Description Interval E-value
DUF6404 pfam19942
Family of unknown function (DUF6404); This entry represents a member of a biosynthetic gene ...
 1-114 6.85e-37

Family of unknown function (DUF6404); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001055) is described by MIBiG as an example of the following biosynthetic classes, NRP (non-ribosomal peptide) and polyketide, in particular the yersiniabactin biosynthetic gene cluster from Escherichia coli. This family appears to be predominantly found in Proteobacteria.


Pssm-ID: 437774  Cd Length: 115  Bit Score: 121.23  E-value: 6.85e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446064569    1 MTFEQKKARAIALMDSKKMWRSNYAPPLLCILWRLGIRLPPLPFMPFWQVTLLMGSLWGISWGCAMWFIYRGPSGMVAGE 80
Cdd:pfam19942   1 MSFEEKLERALAELEAKGIWRSNYAPPLHRLLWKLGFKVPPPHYASFWQNFLLFGLFFGVVWGLFMWFLVWQGQGMPPGA 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 446064569   81 AIIISITGGFLFGLLTASFHWWRRKVNRLPPWGD 114
Cdd:pfam19942  81 AVAASLLAGVLFGLIMAGYYRWRRRKLGLPDWED 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH