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Conserved domains on  [gi|486129256|ref|WP_001513515|]
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MULTISPECIES: lasso peptide biosynthesis B2 protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Transglut_core3 super family cl24259
Transglutaminase-like superfamily; This family includes uncharacterized proteins that are ...
 126-208 6.68e-19

Transglutaminase-like superfamily; This family includes uncharacterized proteins that are related to the transglutaminase like domain pfam01841.


The actual alignment was detected with superfamily member NF033537:

Pssm-ID: 474174  Cd Length: 130  Bit Score: 78.94  E-value: 6.68e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486129256 126 EEHLIRKEISNLSIIFHLNIFKSDCLTYSYALKRILNSRNIDAHLVIGVRT-QPFYSHSWVEVGGQVINDAPNMRDKLSV 204
Cdd:NF033537  47 EEALIRRARRAVRAASRYCPGRSKCLPRSLAAALLLRRRGIWPTLCIGVRKdGPFAAHAWVEADGGVLVGEPEPTDRFTP 126


                 ....
gi 486129256 205 IAEI 208
Cdd:NF033537 127 ILTV 130
 
Name Accession Description Interval E-value
lasso_biosyn_B2 NF033537
lasso peptide biosynthesis B2 protein;
126-208 6.68e-19

lasso peptide biosynthesis B2 protein;


Pssm-ID: 468068  Cd Length: 130  Bit Score: 78.94  E-value: 6.68e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486129256 126 EEHLIRKEISNLSIIFHLNIFKSDCLTYSYALKRILNSRNIDAHLVIGVRT-QPFYSHSWVEVGGQVINDAPNMRDKLSV 204
Cdd:NF033537  47 EEALIRRARRAVRAASRYCPGRSKCLPRSLAAALLLRRRGIWPTLCIGVRKdGPFAAHAWVEADGGVLVGEPEPTDRFTP 126


                 ....
gi 486129256 205 IAEI 208
Cdd:NF033537 127 ILTV 130
Transglut_core3 pfam13471
Transglutaminase-like superfamily; This family includes uncharacterized proteins that are ...
 146-206 1.27e-16

Transglutaminase-like superfamily; This family includes uncharacterized proteins that are related to the transglutaminase like domain pfam01841.


Pssm-ID: 433236  Cd Length: 117  Bit Score: 72.39  E-value: 1.27e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 486129256  146 FKSDCLTYSYALKRILNSRNIDAHLVIGVRTQ--PFYSHSWVEVGGQVINDAPNMRDKLSVIA 206
Cdd:pfam13471  54 WRSKCLPRALAAALLLRRRGIPATLVIGVRKDddPFAAHAWVEVGGRVVTDAPEGRARFTPIL 116
 
Name Accession Description Interval E-value
lasso_biosyn_B2 NF033537
lasso peptide biosynthesis B2 protein;
126-208 6.68e-19

lasso peptide biosynthesis B2 protein;


Pssm-ID: 468068  Cd Length: 130  Bit Score: 78.94  E-value: 6.68e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486129256 126 EEHLIRKEISNLSIIFHLNIFKSDCLTYSYALKRILNSRNIDAHLVIGVRT-QPFYSHSWVEVGGQVINDAPNMRDKLSV 204
Cdd:NF033537  47 EEALIRRARRAVRAASRYCPGRSKCLPRSLAAALLLRRRGIWPTLCIGVRKdGPFAAHAWVEADGGVLVGEPEPTDRFTP 126


                 ....
gi 486129256 205 IAEI 208
Cdd:NF033537 127 ILTV 130
Transglut_core3 pfam13471
Transglutaminase-like superfamily; This family includes uncharacterized proteins that are ...
 146-206 1.27e-16

Transglutaminase-like superfamily; This family includes uncharacterized proteins that are related to the transglutaminase like domain pfam01841.


Pssm-ID: 433236  Cd Length: 117  Bit Score: 72.39  E-value: 1.27e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 486129256  146 FKSDCLTYSYALKRILNSRNIDAHLVIGVRTQ--PFYSHSWVEVGGQVINDAPNMRDKLSVIA 206
Cdd:pfam13471  54 WRSKCLPRALAAALLLRRRGIPATLVIGVRKDddPFAAHAWVEVGGRVVTDAPEGRARFTPIL 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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