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Conserved domains on  [gi|487747198|ref|WP_001829339|]
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MULTISPECIES: DUF2187 family protein [Staphylococcus]

Protein Classification

YkvS family protein( domain architecture ID 10008899)

YkvS family protein is a DUF2187 domain-containing protein; similar to Bacillus subtilis protein YkvS

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YkvS COG4873
Uncharacterized conserved protein YkvS, DUF2187 family [Function unknown];
1-60 1.90e-25

Uncharacterized conserved protein YkvS, DUF2187 family [Function unknown];


:

Pssm-ID: 443901  Cd Length: 68  Bit Score: 88.16  E-value: 1.90e-25
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 487747198  1 MTVAEVGNIVEFYDGLRGRVEKINDNSVIVDLTIMDNFNELDLP-EKTVINHKRYKIVDQE 60
Cdd:COG4873   6 MKKAEVGDIIEFKDGLKGKVEKVNENSVIVDLTIMENFDERDLEyEKTVVNHKNYKIIERA 66
 
Name Accession Description Interval E-value
YkvS COG4873
Uncharacterized conserved protein YkvS, DUF2187 family [Function unknown];
1-60 1.90e-25

Uncharacterized conserved protein YkvS, DUF2187 family [Function unknown];


Pssm-ID: 443901  Cd Length: 68  Bit Score: 88.16  E-value: 1.90e-25
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 487747198  1 MTVAEVGNIVEFYDGLRGRVEKINDNSVIVDLTIMDNFNELDLP-EKTVINHKRYKIVDQE 60
Cdd:COG4873   6 MKKAEVGDIIEFKDGLKGKVEKVNENSVIVDLTIMENFDERDLEyEKTVVNHKNYKIIERA 66
DUF2187 pfam09953
Uncharacterized protein conserved in bacteria (DUF2187); This domain, found in various ...
 2-57 1.39e-18

Uncharacterized protein conserved in bacteria (DUF2187); This domain, found in various hypothetical bacterial proteins, has no known function.


Pssm-ID: 401795  Cd Length: 60  Bit Score: 70.94  E-value: 1.39e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 487747198   2 TVAEVGNIVEFYDG---LRGRVEKINDNSVIVDLTIMDNFNELDLP-EKTVINHKRYKIV 57
Cdd:pfam09953  1 KKAKVGDIIEFKRGdltLTGIVEKVNENSVIVDLTIMDNFDELDLEfERTVVNHKNYKII 60
 
Name Accession Description Interval E-value
YkvS COG4873
Uncharacterized conserved protein YkvS, DUF2187 family [Function unknown];
1-60 1.90e-25

Uncharacterized conserved protein YkvS, DUF2187 family [Function unknown];


Pssm-ID: 443901  Cd Length: 68  Bit Score: 88.16  E-value: 1.90e-25
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 487747198  1 MTVAEVGNIVEFYDGLRGRVEKINDNSVIVDLTIMDNFNELDLP-EKTVINHKRYKIVDQE 60
Cdd:COG4873   6 MKKAEVGDIIEFKDGLKGKVEKVNENSVIVDLTIMENFDERDLEyEKTVVNHKNYKIIERA 66
DUF2187 pfam09953
Uncharacterized protein conserved in bacteria (DUF2187); This domain, found in various ...
 2-57 1.39e-18

Uncharacterized protein conserved in bacteria (DUF2187); This domain, found in various hypothetical bacterial proteins, has no known function.


Pssm-ID: 401795  Cd Length: 60  Bit Score: 70.94  E-value: 1.39e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 487747198   2 TVAEVGNIVEFYDG---LRGRVEKINDNSVIVDLTIMDNFNELDLP-EKTVINHKRYKIV 57
Cdd:pfam09953  1 KKAKVGDIIEFKRGdltLTGIVEKVNENSVIVDLTIMDNFDELDLEfERTVVNHKNYKII 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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