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Conserved domains on  [gi|488224527|ref|WP_002295735|]
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MULTISPECIES: peptide-binding protein [Bacilli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Omega_Repress super family cl06683
Omega Transcriptional Repressor; The omega transcriptional repressor regulates expression of ...
 3-71 3.41e-37

Omega Transcriptional Repressor; The omega transcriptional repressor regulates expression of involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA.


The actual alignment was detected with superfamily member pfam07764:

Pssm-ID: 429646  Cd Length: 69  Bit Score: 118.68  E-value: 3.41e-37
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488224527   3 VGNLGAQKAKRNDTPISAKKDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDKALEEYIRKYLPDKL 71
Cdd:pfam07764  1 MGNLGAQKAKRNDTPISAKKDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL 69
 
Name Accession Description Interval E-value
Omega_Repress pfam07764
Omega Transcriptional Repressor; The omega transcriptional repressor regulates expression of ...
 3-71 3.41e-37

Omega Transcriptional Repressor; The omega transcriptional repressor regulates expression of involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA.


Pssm-ID: 429646  Cd Length: 69  Bit Score: 118.68  E-value: 3.41e-37
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488224527   3 VGNLGAQKAKRNDTPISAKKDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDKALEEYIRKYLPDKL 71
Cdd:pfam07764  1 MGNLGAQKAKRNDTPISAKKDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL 69
 
Name Accession Description Interval E-value
Omega_Repress pfam07764
Omega Transcriptional Repressor; The omega transcriptional repressor regulates expression of ...
 3-71 3.41e-37

Omega Transcriptional Repressor; The omega transcriptional repressor regulates expression of involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA.


Pssm-ID: 429646  Cd Length: 69  Bit Score: 118.68  E-value: 3.41e-37
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488224527   3 VGNLGAQKAKRNDTPISAKKDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDKALEEYIRKYLPDKL 71
Cdd:pfam07764  1 MGNLGAQKAKRNDTPISAKKDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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