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Conserved domains on  [gi|488909379|ref|WP_002820454|]
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tetratricopeptide repeat protein [Oenococcus oeni]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1000094)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 72-335 1.16e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.94  E-value: 1.16e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  72 LAEIYLDEGNDDQALDYLDKIEQKSSLYLSAQIDKADLYESEGLTESAEGVLLDLQNISSD-PIVRFALAEFYDAEGENG 150
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 151 KSAQLYDYLINQGhelINKINLHARLAMALASNGEFEESITEFQKVGLKNLSSKEISS-LAQAYFQSGDREKSQQLIEEN 229
Cdd:COG2956   94 RAEELLEKLLELD---PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCeLAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 230 IDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAIS 309
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250

                        250       260
                 ....*....|....*....|....*.
gi 488909379 310 LLAYnFLQEKEYDQTISLINRHIEDD 335
Cdd:COG2956  251 LADL-LERKEGLEAALALLERQLRRH 275
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 271-405 3.50e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.12  E-value: 3.50e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 271 LLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIEDDEIDQHYLWYLGLAYF 350
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 488909379 351 NSDQQKQAEKSFERVDEYFSEEPSFLKD-AFFVFKTTNIERARNYLKKYLQIVPED 405
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRlARAYRALGRPDEAIAALEKALELDPDD 139
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 72-335 1.16e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.94  E-value: 1.16e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  72 LAEIYLDEGNDDQALDYLDKIEQKSSLYLSAQIDKADLYESEGLTESAEGVLLDLQNISSD-PIVRFALAEFYDAEGENG 150
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 151 KSAQLYDYLINQGhelINKINLHARLAMALASNGEFEESITEFQKVGLKNLSSKEISS-LAQAYFQSGDREKSQQLIEEN 229
Cdd:COG2956   94 RAEELLEKLLELD---PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCeLAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 230 IDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAIS 309
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250

                        250       260
                 ....*....|....*....|....*.
gi 488909379 310 LLAYnFLQEKEYDQTISLINRHIEDD 335
Cdd:COG2956  251 LADL-LERKEGLEAALALLERQLRRH 275
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 45-405 1.72e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 66.26  E-value: 1.72e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379   45 QGFIDDAKSILENLNEKDNKNDQINLDLAEIYLDEGNDDQALDYLDKIEQKSSLYLSAQIDKADLYESEGLTESAEGVLL 124
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  125 DLQNIS-SDPIVRFALAEFYDAEGENGKSAQLYDYLINQ--GHELINKINlharlAMALASNGEFEESITEFQKVGLKNL 201
Cdd:TIGR02917 218 KAIALRpNNIAVLLALATILIEAGEFEEAEKHADALLKKapNSPLAHYLK-----ALVDFQKKNYEDARETLQDALKSAP 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  202 SSKEISSLAQA-YFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTLQL------------------ 262
Cdd:TIGR02917 293 EYLPALLLAGAsEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPalgldpddpaalsllgea 372

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  263 ----------------AKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTIS 326
Cdd:TIGR02917 373 ylalgdfekaaeylakATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALA 452

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  327 LINRHIEDdEIDQHYLW-YLGLAYFNSDQQKQAEKSFErvdEYFSEEPSFLKDAFFV----FKTTNIERARNYLKKYLQI 401
Cdd:TIGR02917 453 AAKKLEKK-QPDNASLHnLLGAIYLGKGDLAKAREAFE---KALSIEPDFFPAAANLaridIQEGNPDDAIQRFEKVLTI 528


                  ....
gi 488909379  402 VPED 405
Cdd:TIGR02917 529 DPKN 532
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 271-405 3.50e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.12  E-value: 3.50e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 271 LLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIEDDEIDQHYLWYLGLAYF 350
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 488909379 351 NSDQQKQAEKSFERVDEYFSEEPSFLKD-AFFVFKTTNIERARNYLKKYLQIVPED 405
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRlARAYRALGRPDEAIAALEKALELDPDD 139
TPR_19 pfam14559
Tetratricopeptide repeat;
49-103 3.94e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 38.33  E-value: 3.94e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 488909379   49 DDAKSILENLNEKDNKNDQINLDLAEIYLDEGNDDQALDYLDKI---EQKSSLYLSAQ 103
Cdd:pfam14559   5 AEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALpaaDPDDPRYAALL 62
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 72-335 1.16e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.94  E-value: 1.16e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  72 LAEIYLDEGNDDQALDYLDKIEQKSSLYLSAQIDKADLYESEGLTESAEGVLLDLQNISSD-PIVRFALAEFYDAEGENG 150
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 151 KSAQLYDYLINQGhelINKINLHARLAMALASNGEFEESITEFQKVGLKNLSSKEISS-LAQAYFQSGDREKSQQLIEEN 229
Cdd:COG2956   94 RAEELLEKLLELD---PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCeLAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 230 IDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAIS 309
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250

                        250       260
                 ....*....|....*....|....*.
gi 488909379 310 LLAYnFLQEKEYDQTISLINRHIEDD 335
Cdd:COG2956  251 LADL-LERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 136-400 4.60e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 83.63  E-value: 4.60e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 136 RFALAEFYDAEGENGKSAQLYDYLINQGHELINkinLHARLAMALASNGEFEESITEFQKVGLKNLSSKEI-SSLAQAYF 214
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVE---AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAlLELAQDYL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 215 QSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKEL 294
Cdd:COG2956   88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 295 HFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIEDDEIDQHYLWYLGLAYFNSDQQKQAEKSFERVDEYFSEEPS 374
Cdd:COG2956  168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247

                        250       260
                 ....*....|....*....|....*.
gi 488909379 375 FLKDAFFVFKTTNIERARNYLKKYLQ 400
Cdd:COG2956  248 LLALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 22-261 1.92e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 79.00  E-value: 1.92e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  22 LINKALANDSENE--LIDLTESLISQGFIDDAKSILENLNEKDNKNDQINLDLAEIYLDEGNDDQALDYLDKIEQKSSLY 99
Cdd:COG2956   30 LLEEALELDPETVeaHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDD 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 100 LSAQIDKADLYESEGLTESAEGVLLDLQNISSDPI-VRFALAEFYDAEGENGKSAQLYDYLINqghelINKINLHARLAM 178
Cdd:COG2956  110 AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAhAYCELAELYLEQGDYDEAIEALEKALK-----LDPDCARALLLL 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 179 A--LASNGEFEESITEFQKVGLKNLSSKEI-SSLAQAYFQSGDREKSQQLIEENIDHQeASLDDYLNLASIYEKQGNSKE 255
Cdd:COG2956  185 AelYLEQGDYEEAIAALERALEQDPDYLPAlPRLAELYEKLGDPEEALELLRKALELD-PSDDLLLALADLLERKEGLEA 263


                 ....*.
gi 488909379 256 QLRTLQ 261
Cdd:COG2956  264 ALALLE 269
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 209-407 9.42e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 77.08  E-value: 9.42e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 209 LAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYT 288
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 289 ASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIEDDEIDQHYLWYLGLAYFNSDQQKQAEKSFERVDEY 368
Cdd:COG2956   94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 488909379 369 FSE-EPSFLKDAFFVFKTTNIERARNYLKKYLQIVPEDFE 407
Cdd:COG2956  174 DPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP 213
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 176-405 3.23e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 75.15  E-value: 3.23e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 176 LAMALASNGEFEESITEFQKVGLKNLSSKEI-SSLAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSK 254
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAhLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 255 EQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIED 334
Cdd:COG2956   94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488909379 335 DEIDQHYLWYLGLAYFNSDQQKQAEKSFERVDEYFSEEPSFLKDAFFVF-KTTNIERARNYLKKYLQIVPED 405
Cdd:COG2956  174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYeKLGDPEEALELLRKALELDPSD 245
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 102-353 1.50e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 69.25  E-value: 1.50e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 102 AQIDKADLYESEGLTESAEGVLLDLQNISSDPIVRFALAEFYDAEGENGKSAQLYDYLINQGHELINKINLHARLAMALA 181
Cdd:COG3914   10 AALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQ 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 182 SNGEFEESITEFQK-VGLKNLSSKEISSLAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTL 260
Cdd:COG3914   90 ALGRYEEALALYRRaLALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 261 QLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQtISLINRHIEDDEIDQH 340
Cdd:COG3914  170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV-YDRFEELLAALARGPS 248

                        250
                 ....*....|...
gi 488909379 341 YLWYLGLAYFNSD 353
Cdd:COG3914  249 ELSPFALLYLPDD 261
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 45-405 1.72e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 66.26  E-value: 1.72e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379   45 QGFIDDAKSILENLNEKDNKNDQINLDLAEIYLDEGNDDQALDYLDKIEQKSSLYLSAQIDKADLYESEGLTESAEGVLL 124
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  125 DLQNIS-SDPIVRFALAEFYDAEGENGKSAQLYDYLINQ--GHELINKINlharlAMALASNGEFEESITEFQKVGLKNL 201
Cdd:TIGR02917 218 KAIALRpNNIAVLLALATILIEAGEFEEAEKHADALLKKapNSPLAHYLK-----ALVDFQKKNYEDARETLQDALKSAP 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  202 SSKEISSLAQA-YFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTLQL------------------ 262
Cdd:TIGR02917 293 EYLPALLLAGAsEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPalgldpddpaalsllgea 372

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  263 ----------------AKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTIS 326
Cdd:TIGR02917 373 ylalgdfekaaeylakATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALA 452

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  327 LINRHIEDdEIDQHYLW-YLGLAYFNSDQQKQAEKSFErvdEYFSEEPSFLKDAFFV----FKTTNIERARNYLKKYLQI 401
Cdd:TIGR02917 453 AAKKLEKK-QPDNASLHnLLGAIYLGKGDLAKAREAFE---KALSIEPDFFPAAANLaridIQEGNPDDAIQRFEKVLTI 528


                  ....
gi 488909379  402 VPED 405
Cdd:TIGR02917 529 DPKN 532
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 20-407 1.10e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 63.56  E-value: 1.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379   20 QNLINKALANDSENELID--LTESLISQGFIDDAKSILENLNEKDNKNDQINLDLAEIYLDEGNDDQALDYLDKIEQKSS 97
Cdd:TIGR02917 315 YQYLNQILKYAPNSHQARrlLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379   98 LYLSAQIDKADLYESEGLTESAEGVLLDLQNISSDPI-VRFALAEFYDAEGENGKsaqlydylinqghelinkinlharl 176
Cdd:TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGrADLLLILSYLRSGQFDK------------------------- 449

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  177 AMALASNGEFEESitefQKVGLKNLsskeissLAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQ 256
Cdd:TIGR02917 450 ALAAAKKLEKKQP----DNASLHNL-------LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  257 LRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIEDDE 336
Cdd:TIGR02917 519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488909379  337 IDQHYLWYLGLAYFNSDQQKQAEKSFERVDEYFSEEP-SFLKDAFFVFKTTNIERARNYLKKYLQIVPEDFE 407
Cdd:TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAlALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 67-367 1.81e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.79  E-value: 1.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379   67 QINLDLAEIYLDEGNDDQALDYLDKIE-QKSSLYLSAQIDKADLYESEGLTESAEGVLLDLQNISSDPI-VRFALAEFYD 144
Cdd:TIGR02917  91 QVLPLLARAYLLQGKFQQVLDELPGKTlLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLyAKLGLAQLAL 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  145 AEGENGKSAQLYDYLINQGHELINKINLHARLAMALasnGEFEESITEFQKV-GLKNLSSKEISSLAQAYFQSGDREKSQ 223
Cdd:TIGR02917 171 AENRFDEARALIDEVLTADPGNVDALLLKGDLLLSL---GNIELALAAYRKAiALRPNNIAVLLALATILIEAGEFEEAE 247

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  224 QLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPS 303
Cdd:TIGR02917 248 KHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN 327

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488909379  304 QTNAISLLAYNFLQEKEYDQTISLINRHIEDDEIDQHYLWYLGLAYFNSDQQKQAEKSFERVDE 367
Cdd:TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATE 391
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
173-359 1.89e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 57.71  E-value: 1.89e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 173 HARLAMALASNGEFEESITEFQK-VGLKNLSSKEISSLAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQG 251
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKaLELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 252 NSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRH 331
Cdd:COG0457   91 RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170

                        170       180
                 ....*....|....*....|....*...
gi 488909379 332 IEDDEIDQHYLWYLGLAYFNSDQQKQAE 359
Cdd:COG0457  171 EAAALAALLAAALGEAALALAAAEVLLA 198
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 209-335 4.53e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 4.53e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 209 LAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYT 288
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 488909379 289 ASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIEDD 335
Cdd:COG4783   90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
209-368 1.30e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.40  E-value: 1.30e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 209 LAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYT 288
Cdd:COG0457   14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 289 ASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIEDDEIDQHYLWYLGLAYFNSDQQKQAEKSFERVDEY 368
Cdd:COG0457   94 EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAA 173
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 209-373 2.69e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.77  E-value: 2.69e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 209 LAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYT 288
Cdd:COG3914   50 ALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLE 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 289 ASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIEDDEiDQHYLWY-LGLAYFNSDQQKQAEKSFERVDE 367
Cdd:COG3914  130 EALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP-DNAEALNnLGNALQDLGRLEEAIAAYRRALE 208


                 ....*.
gi 488909379 368 YFSEEP 373
Cdd:COG3914  209 LDPDNA 214
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 271-405 3.50e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.12  E-value: 3.50e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 271 LLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIEDDEIDQHYLWYLGLAYF 350
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 488909379 351 NSDQQKQAEKSFERVDEYFSEEPSFLKD-AFFVFKTTNIERARNYLKKYLQIVPED 405
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRlARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 22-363 3.67e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.47  E-value: 3.67e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379   22 LINKALANDSENELID--LTESLISQGFIDDAKSILENLNEKDNKNDQINLDLAEIYLDEGNDDQALDYLDKIEQKSSLY 99
Cdd:TIGR02917 385 YLAKATELDPENAAARtqLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN 464

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  100 LSAQIDKADLYESEGLTESAEGVLLDLQNISSD-PIVRFALAEFYDAEGENGKSAQLYDYLInqgheLINKINLHARLAM 178
Cdd:TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDfFPAAANLARIDIQEGNPDDAIQRFEKVL-----TIDPKNLRAILAL 539

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  179 A--LASNGEFEESITEFQKVGLKNlsSKEIS---SLAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNS 253
Cdd:TIGR02917 540 AglYLRTGNEEEAVAWLEKAAELN--PQEIEpalALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL 617

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  254 KEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLInRHIE 333
Cdd:TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA-KSLQ 696

                         330       340       350
                  ....*....|....*....|....*....|.
gi 488909379  334 DDEIDQHYLW-YLGLAYFNSDQQKQAEKSFE 363
Cdd:TIGR02917 697 KQHPKAALGFeLEGDLYLRQKDYPAAIQAYR 727
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 24-162 6.13e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.58  E-value: 6.13e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  24 NKALANDSENE--LIDLTESLISQGFIDDAKSILENLNEKDNKNDQINLDLAEIYLDEGNDDQALDYLDKIEQKSSLYLS 101
Cdd:COG2956  134 ERLLKLGPENAhaYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP 213

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488909379 102 AQIDKADLYESEGLTESAEGVLLDLQNISSDPIVRFALAEFYDAEGENGKSAQLYDYLINQ 162
Cdd:COG2956  214 ALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 234-372 7.14e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.35  E-value: 7.14e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 234 EASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAY 313
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 488909379 314 NFLQEKEYDQTISLINRHIEDDEIDQHYLWYLGLAYFNSDQQKQAEKSFERVDEYFSEE 372
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 24-319 5.52e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.01  E-value: 5.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379   24 NKALANDSEN--ELIDLTESLISQGFIDDAKSILENLNEKDNKNDQINLDLAEIYLDEGNDDQALDYLDKIEQKSSLYLS 101
Cdd:TIGR02917 489 EKALSIEPDFfpAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE 568

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  102 AQIDKADLYESEGLTESAEGVLLDLQNISSDPI---------------VRFALAEFYDAEGENGKSAQLYdYLINQGHEL 166
Cdd:TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPeawlmlgraqlaagdLNKAVSSFKKLLALQPDSALAL-LLLADAYAV 647

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  167 ----------------INKINLHARLAMA--LASNGEFEESITEFQKVGLKNLSSKEISSL-AQAYFQSGDREKSQQLIE 227
Cdd:TIGR02917 648 mknyakaitslkraleLKPDNTEAQIGLAqlLLAAKRTESAKKIAKSLQKQHPKAALGFELeGDLYLRQKDYPAAIQAYR 727

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  228 ENIdHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNA 307
Cdd:TIGR02917 728 KAL-KRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVV 806

                         330
                  ....*....|..
gi 488909379  308 ISLLAYNFLQEK 319
Cdd:TIGR02917 807 LNNLAWLYLELK 818
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 171-407 6.86e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.62  E-value: 6.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  171 NLHAR--LAMALASNGEFEESITEFQKVGLKNLSSKEIS-SLAQAYFQSGdreKSQQLIEE------NIDHQEASLDDYL 241
Cdd:TIGR02917  55 DAEARflLGKIYLALGDYAAAEKELRKALSLGYPKNQVLpLLARAYLLQG---KFQQVLDElpgktlLDDEGAAELLALR 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  242 NLAsiYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEY 321
Cdd:TIGR02917 132 GLA--YLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNI 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  322 DQTISLINRHIEDDEIDQHYLWYLGLAYFNSDQQKQAEKSFERVDEYFSEEPS--FLKdAFFVFKTTNIERARNYLKKYL 399
Cdd:TIGR02917 210 ELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLahYLK-ALVDFQKKNYEDARETLQDAL 288


                  ....*...
gi 488909379  400 QIVPEDFE 407
Cdd:TIGR02917 289 KSAPEYLP 296
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 234-363 1.22e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.85  E-value: 1.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  234 EASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAY 313
Cdd:TIGR02917  19 DQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLAR 98

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 488909379  314 NFLQEKEYDQTISLI-NRHIEDDEIDQHYLWYLGLAYFNSDQQKQAEKSFE 363
Cdd:TIGR02917  99 AYLLQGKFQQVLDELpGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYE 149
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 173-304 2.19e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.72  E-value: 2.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 173 HARLAMALASNGEFEESITEFQKVGLKNLSSKEI-SSLAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQG 251
Cdd:COG4783    7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAfALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 488909379 252 NSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQ 304
Cdd:COG4783   87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 223-330 3.47e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 3.47e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 223 QQLIEENIDHQEAslddYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDP 302
Cdd:COG4235    7 RQALAANPNDAEG----WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82

                         90       100
                 ....*....|....*....|....*...
gi 488909379 303 SQTNAISLLAYNFLQEKEYDQTISLINR 330
Cdd:COG4235   83 DNPEALYLLGLAAFQQGDYAEAIAAWQK 110
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 255-365 5.84e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.38  E-value: 5.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 255 EQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIED 334
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 488909379 335 DEIDQHYLWYLGLAYFNSDQQKQAEKSFERV 365
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 34-156 6.44e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.57  E-value: 6.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  34 ELIDLTESLISQGFIDDAKSILENLNEKDNKNDQINLDLAEIYLDEGNDDQALDYLDKIEQKSSLYLSAQIDKADLYESE 113
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 488909379 114 GLTESAEGVLLD-LQNISSDPIVRFALAEFYDAEGENGKSAQLY 156
Cdd:COG4783   86 GDYDEALALLEKaLKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
132-359 8.76e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.92  E-value: 8.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 132 DPIVRFALAEFYDAEGENGKSAQLYDYLINQGHELINkinLHARLAMALASNGEFEESITEFQKVGLKNLSSKEI-SSLA 210
Cdd:COG0457    7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE---ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAlNNLG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 211 QAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTAS 290
Cdd:COG0457   84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488909379 291 NKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIEDDEIDQHYLWYLGLAYFNSDQQKQAE 359
Cdd:COG0457  164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 209-287 2.53e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.46  E-value: 2.53e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488909379 209 LAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDY 287
Cdd:COG4235   23 LGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
212-404 2.72e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.91  E-value: 2.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 212 AYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFD-------------PFNLLARFKLA 278
Cdd:COG4785    1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAalaaeridralalPDLAQLYYERG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 279 LLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIEDDEIDQHYLWYLGLAYFNSDQQKQA 358
Cdd:COG4785   81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 488909379 359 EKSFERVDEYFSEEPSFLKDAFFVFKTTNIERARNYLKKYLQIVPE 404
Cdd:COG4785  161 IADLEKALELDPNDPERALWLYLAERKLDPEKALALLLEDWATAYL 206
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
267-407 9.46e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.84  E-value: 9.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 267 DPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIEDDEIDQHYLWYLG 346
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488909379 347 LAYFNSDQQKQAEKSFERVDEYFSEEPSFLKD-AFFVFKTTNIERARNYLKKYLQIVPEDFE 407
Cdd:COG0457   84 LALQALGRYEEALEDYDKALELDPDDAEALYNlGLALLELGRYDEAIEAYERALELDPDDAD 145
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 70-200 9.53e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.10  E-value: 9.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  70 LDLAEIYLDEGNDDQALDYLDKIEQKSSLYLSAQIDKADLYESEGLTESAEGVLLD-LQNISSDPIVRFALAEFYDAEGE 148
Cdd:COG4783    8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEaLELDPDEPEARLNLGLALLKAGD 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 488909379 149 NGKSAQLYDYLINQGHELINkinLHARLAMALASNGEFEESITEFQKVGLKN 200
Cdd:COG4783   88 YDEALALLEKALKLDPEHPE---AYLRLARAYRALGRPDEAIAALEKALELD 136
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 152-302 1.08e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.25  E-value: 1.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 152 SAQLYDYLINQGHELINKINLHARLAMALASNGEFEESITEFQKVGLKNLSSKEISSLAQAYFQSGDREKSQQLIEENID 231
Cdd:COG5010    3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488909379 232 HQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASNKELHFIIKKDP 302
Cdd:COG5010   83 LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 123-268 1.82e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 1.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 123 LLDLQNISSDPIVRFALAEFYDAEGENGKSAQLYDYLINQGHELINKINLHARLAMALASNGEFEESITEFQK-VGLKNL 201
Cdd:COG5010    7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQaLQLDPN 86

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488909379 202 SSKEISSLAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFDP 268
Cdd:COG5010   87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 272-405 2.38e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 2.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 272 LARFKLALLQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLINRHIEDDEIDQHYLWYLGLAYFN 351
Cdd:COG2956    9 LGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 488909379 352 SDQQKQAEKSFERVDEYFSEEPSFLKD-AFFVFKTTNIERARNYLKKYLQIVPED 405
Cdd:COG2956   89 AGLLDRAEELLEKLLELDPDDAEALRLlAEIYEQEGDWEKAIEVLERLLKLGPEN 143
TPR_19 pfam14559
Tetratricopeptide repeat;
49-103 3.94e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 38.33  E-value: 3.94e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 488909379   49 DDAKSILENLNEKDNKNDQINLDLAEIYLDEGNDDQALDYLDKI---EQKSSLYLSAQ 103
Cdd:pfam14559   5 AEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALpaaDPDDPRYAALL 62
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
212-303 5.33e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 5.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 212 AYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNsKEQLRTLQLAKSFDPFNLLARFKLALLQSDLGDYTASN 291
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGR-YDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|..
gi 488909379 292 KELHFIIKKDPS 303
Cdd:COG3063   80 AYLERALELDPS 91
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
173-300 1.10e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 40.25  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 173 HARLAMALASNGEFEESITEFQKvGLKNLSSKEIS---SLAQAYFQSGDREKSQQ----LIEENIDHQeaSLDDYLNLAS 245
Cdd:COG4700   92 RVRLADALLELGRYDEAIELYEE-ALTGIFADDPHillGLAQALFELGRYAEALEtlekLIAKNPDFK--SSDAHLLYAR 168

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 488909379 246 IYEKQGN---SKEQLRtlQLAKSFDPFNllARFKLALLQSDLGDYTASNKELHFIIKK 300
Cdd:COG4700  169 ALEALGDleaAEAELE--ALARRYSGPE--ARYRYAKFLARQGRTAEAKELLEEILDE 222
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 170-281 1.52e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 1.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 170 INLHARLAMALASNGEFEESITEFQK-VGLKNLSSKEISSLAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYE 248
Cdd:COG4235   17 AEGWLLLGRAYLRLGRYDEALAAYEKaLRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                         90       100       110
                 ....*....|....*....|....*....|...
gi 488909379 249 KQGNSKEQLRTLQLAKSFDPFNLLARFKLALLQ 281
Cdd:COG4235   97 QQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
280-365 2.28e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.07  E-value: 2.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 280 LQSDLGDYTASNKELHFIIKKDPSQTNAISLLAYNFLQEKEYDQTISLiNRHIEDDEIDQHYLWYLGLAYFNSDQQKQAE 359
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                 ....*.
gi 488909379 360 KSFERV 365
Cdd:COG3063   80 AYLERA 85
NatA_aux_su pfam12569
N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal ...
 209-267 2.32e-03

N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal acetyltransferase A (NatA) auxiliary subunit (also known as NMDA receptor-regulated protein 1), which is a non-catalytic component of the NatA N-terminal acetyltransferase that catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protecting against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome, and may present the N terminus of nascent polypeptides for acetylation.


Pssm-ID: 463630 [Multi-domain]  Cd Length: 514  Bit Score: 39.95  E-value: 2.32e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 488909379  209 LAQAYFQSGDREKSQQLIEENIDHQEASLDDYLNLASIYEKQGNSKEQLRTLQLAKSFD 267
Cdd:pfam12569 198 LAQHYDYLGSYEKALEYIDKAIDHTPTLIELYMTKARIYKHAGDLQKAAEWMDEARSLD 256
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 72-263 4.07e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.12  E-value: 4.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379  72 LAEIYLDEGNDDQALDYLDKIEQKSSLYLSAQIDKADLYESEGLTESAEGVLLDLQNIS------SDPIVRFALAEFYDA 145
Cdd:COG3071   91 RAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKalsaeeAQALERRAYLGLLRQ 170

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 146 EGENgkSAQLYDYLINQGHELINKINLHARLAMALASNGEFEESITEFQKvGLKNLSSKEI------------------- 206
Cdd:COG3071  171 AARD--AEALKALWKALPRAERRDPELAAAYARALIALGDHDEAERLLRE-ALKRQWDPRLvrlygrlqggdpakqlkra 247

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488909379 207 --------------SSLAQAYFQSGDREKSQQLIEENIDhQEASLDDYLNLASIYEKQGNSKEQLRTLQLA 263
Cdd:COG3071  248 ekwlkkhpndpdllLALGRLCLRNQLWGKAREYLEAALA-LRPSAEAYAELARLLEQLGDPEEAAEHYRKA 317
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 303-407 6.51e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 36.71  E-value: 6.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488909379 303 SQTNAISLLAYNFLQEKEYDQTISLINRHIEDDEIDQHYLWYLGLAYFNSDQQKQAEKSFERVDEYFSEEPSFLKD-AFF 381
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNlGLA 81

                         90       100
                 ....*....|....*....|....*.
gi 488909379 382 VFKTTNIERARNYLKKYLQIVPEDFE 407
Cdd:COG4783   82 LLKAGDYDEALALLEKALKLDPEHPE 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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