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Conserved domains on  [gi|488943804|ref|WP_002854879|]
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MULTISPECIES: flagellar basal body rod protein FlgB [Campylobacter]

Protein Classification

flagellar basal body rod protein FlgB( domain architecture ID 11448558)

flagellar basal body rod protein FlgB forms, together with FlgC and FlgF, the proximal portion of the central rod at the core of the flagellar organelle's basal body

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-136 1.36e-28

Flagellar basal body rod protein FlgB [Cell motility];


:

Pssm-ID: 441420  Cd Length: 135  Bit Score: 101.91  E-value: 1.36e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804   1 MINPF-KSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEFETALvNRANEifkkNDNKELQLAVTEEGHQKPWKF 79
Cdd:COG1815    1 MSILFdKTFGLLEKALDLRSLRQEVIASNIANADTPGYKARDVDFEAAL-KAALG----GGSAGLALATTNPRHIPGSAG 75

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 488943804  80 PDPSKSTIYlRDGHLARNDANTVDLDVETTEMSKNTVMITALDGVLRRQSNIFSSIL 136
Cdd:COG1815   76 SSVSPEVLY-RTPTQPSLDGNTVDLDEEMAKLAENALQYQAALTFLNKKFSMLKTAI 131
 
Name Accession Description Interval E-value
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-136 1.36e-28

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 101.91  E-value: 1.36e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804   1 MINPF-KSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEFETALvNRANEifkkNDNKELQLAVTEEGHQKPWKF 79
Cdd:COG1815    1 MSILFdKTFGLLEKALDLRSLRQEVIASNIANADTPGYKARDVDFEAAL-KAALG----GGSAGLALATTNPRHIPGSAG 75

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 488943804  80 PDPSKSTIYlRDGHLARNDANTVDLDVETTEMSKNTVMITALDGVLRRQSNIFSSIL 136
Cdd:COG1815   76 SSVSPEVLY-RTPTQPSLDGNTVDLDEEMAKLAENALQYQAALTFLNKKFSMLKTAI 131
FlgB TIGR01396
flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components ...
 14-121 4.32e-18

flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components of bacterial flagella that share a domain described by pfam00460. FlgB is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 273598 [Multi-domain]  Cd Length: 131  Bit Score: 74.73  E-value: 4.32e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804   14 ALAGRNLRNQLINANLANVDTPFYKARDIEFETALvNRAnEIFKKNDNKELQLAVTEEGHQKPWKFPDPSKSTIYlRDGH 93
Cdd:TIGR01396  11 ALDVRSLRQEVIANNIANVDTPGYKAKDVSFEAEL-KKA-LDNERNSKLTLARTDTRPRHLNAQDSNSVEPSLQY-DYTT 87

                          90       100
                  ....*....|....*....|....*...
gi 488943804   94 LARNDANTVDLDVETTEMSKNTVMITAL 121
Cdd:TIGR01396  88 QVKNDGNNVDIDQEMAELAQNQMHYQAL 115
flgB PRK12620
flagellar basal body rod protein FlgB; Provisional
 1-107 2.33e-11

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183628  Cd Length: 132  Bit Score: 57.33  E-value: 2.33e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804   1 MINPFKSKELVTG-ALAGRNLRNQLINANLANVDTPFYKARDIEFETALVN----RANEIFKKNDNKelQLAVTEEGHqk 75
Cdd:PRK12620   1 MSSPFTSFLGVHGdALTLREQRMKLIASNLSNVDTPGYKAKDLNFEAALKSaqgeQDGGLMQTTDAK--HYEVGGGGL-- 76

                         90       100       110
                 ....*....|....*....|....*....|..
gi 488943804  76 pwkfpDPSKSTiylRDGHLARNDANTVDLDVE 107
Cdd:PRK12620  77 -----NPFQIT---RESDQPSLDGNTVDPDAE 100
 
Name Accession Description Interval E-value
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-136 1.36e-28

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 101.91  E-value: 1.36e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804   1 MINPF-KSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEFETALvNRANEifkkNDNKELQLAVTEEGHQKPWKF 79
Cdd:COG1815    1 MSILFdKTFGLLEKALDLRSLRQEVIASNIANADTPGYKARDVDFEAAL-KAALG----GGSAGLALATTNPRHIPGSAG 75

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 488943804  80 PDPSKSTIYlRDGHLARNDANTVDLDVETTEMSKNTVMITALDGVLRRQSNIFSSIL 136
Cdd:COG1815   76 SSVSPEVLY-RTPTQPSLDGNTVDLDEEMAKLAENALQYQAALTFLNKKFSMLKTAI 131
FlgB TIGR01396
flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components ...
 14-121 4.32e-18

flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components of bacterial flagella that share a domain described by pfam00460. FlgB is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 273598 [Multi-domain]  Cd Length: 131  Bit Score: 74.73  E-value: 4.32e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804   14 ALAGRNLRNQLINANLANVDTPFYKARDIEFETALvNRAnEIFKKNDNKELQLAVTEEGHQKPWKFPDPSKSTIYlRDGH 93
Cdd:TIGR01396  11 ALDVRSLRQEVIANNIANVDTPGYKAKDVSFEAEL-KKA-LDNERNSKLTLARTDTRPRHLNAQDSNSVEPSLQY-DYTT 87

                          90       100
                  ....*....|....*....|....*...
gi 488943804   94 LARNDANTVDLDVETTEMSKNTVMITAL 121
Cdd:TIGR01396  88 QVKNDGNNVDIDQEMAELAQNQMHYQAL 115
flgB PRK12620
flagellar basal body rod protein FlgB; Provisional
 1-107 2.33e-11

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183628  Cd Length: 132  Bit Score: 57.33  E-value: 2.33e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804   1 MINPFKSKELVTG-ALAGRNLRNQLINANLANVDTPFYKARDIEFETALVN----RANEIFKKNDNKelQLAVTEEGHqk 75
Cdd:PRK12620   1 MSSPFTSFLGVHGdALTLREQRMKLIASNLSNVDTPGYKAKDLNFEAALKSaqgeQDGGLMQTTDAK--HYEVGGGGL-- 76

                         90       100       110
                 ....*....|....*....|....*....|..
gi 488943804  76 pwkfpDPSKSTiylRDGHLARNDANTVDLDVE 107
Cdd:PRK12620  77 -----NPFQIT---RESDQPSLDGNTVDPDAE 100
flgB PRK07182
flagellar basal body rod protein FlgB; Reviewed
 14-116 1.33e-10

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 75964 [Multi-domain]  Cd Length: 148  Bit Score: 55.66  E-value: 1.33e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804  14 ALAGRNLRNQLINANLANVDTPFYKARDIEF--ETALVNRANEIFKKNDNKELQLAVTEEGHQK---PWKFPDP---SKS 85
Cdd:PRK07182  15 AMQLRLTRAELLSANLANVNTPNFQAKDIDFaaEMQRAKRGNGVMAAPDRSSAQMLSTQMSSAQmssPQMMSSPqimSSP 94

                         90       100       110
                 ....*....|....*....|....*....|.
gi 488943804  86 TIYLRDGHLARNDANTVDLDVETTEMSKNTV 116
Cdd:PRK07182  95 QIKYRLPYQPSLDGNTVALNVEQAEFSKNAL 125
flgB PRK12621
flagellar basal body rod protein FlgB; Provisional
 21-127 3.37e-10

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 171613  Cd Length: 136  Bit Score: 54.37  E-value: 3.37e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804  21 RNQLINANLANVDTPFYKARDIEFETALVNRANEifkkndNKELQLAVTEEGHQkPWKFpDPSKSTIYLRDGHLAR--ND 98
Cdd:PRK12621  22 RQNVVMSNLANVNTPGYKPRELEFEKELQAALGL------DAKGKMTRTEKNHL-PAVF-DPEGFEPEWSKAFKPRvvHG 93

                         90       100
                 ....*....|....*....|....*....
gi 488943804  99 ANTVDLDVETTEMSKNTVMITALDGVLRR 127
Cdd:PRK12621  94 EDRVDLDKEMAKMAKNTLQYNALATVIKK 122
flgB PRK12626
flagellar basal body rod protein FlgB; Provisional
 14-128 6.16e-10

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183632  Cd Length: 162  Bit Score: 54.17  E-value: 6.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804  14 ALAGRNLRNQLINANLANVDTPFYKARDIEFETAL---VNRANEIFKKNDNKELQLA------------VTEEGHQ--KP 76
Cdd:PRK12626  15 ALDVRAYRQELLSSNIANADTPGYRARDVDFASTLaraLKQTDGGAAASNAAQLPMAqpagvtsgmsmaSTAPGHMagNV 94

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 488943804  77 WKFPDPSKSTIYLRDGHLARN----DANTVDLDVETTEMSKNTVMITALDGVLRRQ 128
Cdd:PRK12626  95 KLIPTGGPSDDYGRAQYRMPLqpalDGNTVDLDTERVQFADNALHYEAGMTVMTQQ 150
flgB PRK12623
flagellar basal body rod protein FlgB; Provisional
 9-121 6.78e-08

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183630  Cd Length: 131  Bit Score: 48.25  E-value: 6.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804   9 ELVTGALAGRNLRNQLINANLANVDTPFYKARDIEFETALvnraneifkKNDNKELQLAVTEEGHQKPWKfpDPSKSTIY 88
Cdd:PRK12623  14 DLLKKGLDASSYRGKVISNNIANVNTKGYKRHYVTFEENL---------KNNLDNLELKTTNEKHINDGV--EFGQIKEK 82

                         90       100       110
                 ....*....|....*....|....*....|...
gi 488943804  89 LRDGHLARNDANTVDLDVETTEMSKNTVMITAL 121
Cdd:PRK12623  83 VDESTSMRTDGNNVDIDNEMVNQAANTLMYNAL 115
flgB PRK12624
flagellar basal body rod protein FlgB; Provisional
 6-114 4.70e-07

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 139107  Cd Length: 143  Bit Score: 46.21  E-value: 4.70e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804   6 KSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEFETaLVNRANEIFKKNDNKELQLAVTEEGHQ---KPWKFPD- 81
Cdd:PRK12624   9 KTQDLLERGMNNSIQKRKVISDNIANADVPHFKRSEVIFES-MIKRAIESEKIEKEKEVPTQISDERHIqffKPLDYREv 87

                         90       100       110
                 ....*....|....*....|....*....|....
gi 488943804  82 -PSKSTIYLRDghlARNDANTVDLDVETTEMSKN 114
Cdd:PRK12624  88 qPKTNLDYLTT---MRADGNNVDVEKEVVEASNS 118
flgB PRK12685
flagellar basal body rod protein FlgB; Reviewed
 14-114 8.64e-07

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 183682  Cd Length: 116  Bit Score: 44.79  E-value: 8.64e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804  14 ALAGRNLRNQLINANLANVDTPFYKARDIEFETALVNRANEIFKKNDnkelqlavTEEGHQKPWKfpdPSKstiylrdgh 93
Cdd:PRK12685  15 TLDFRVERSKVLASNLANAETPGYKARDLDFKAVMSQINAGMVPNQQ--------YEAQYRVPYQ---NSA--------- 74

                         90       100
                 ....*....|....*....|.
gi 488943804  94 larnDANTVDLDVETTEMSKN 114
Cdd:PRK12685  75 ----DGNTVELGKEQARYSQN 91
flgB PRK12619
flagellar basal body rod protein FlgB; Provisional
 14-116 9.34e-07

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183627  Cd Length: 130  Bit Score: 45.16  E-value: 9.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804  14 ALAGRNLRNQLINANLANVDTPFYKARDIEFETALVNRANeifkkndNKELQLAVTEEGHQKPwkfPDPSKSTIYLRDGH 93
Cdd:PRK12619  15 ALIARDQRASVLANNIANVNTPNFKARDVDFNEVLTATMA-------GNSQQLRVTSDQHIST---NADFMTHLKYRMTH 84

                         90       100
                 ....*....|....*....|...
gi 488943804  94 LARNDANTVDLDVETTEMSKNTV 116
Cdd:PRK12619  85 HASLDGNTVDKDMETTEFARNAL 107
flgB PRK06003
flagellar basal body rod protein FlgB; Reviewed
 20-74 5.53e-06

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 168340  Cd Length: 126  Bit Score: 43.07  E-value: 5.53e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 488943804  20 LRNQLINANLANVDTPFYKARDIE-FETALvnraneifkknDNKELQLAVTEEGHQ 74
Cdd:PRK06003  19 VRQATVAGNIANANTPGYRARDVQpFADVL-----------DKTGLTMAATSPGHL 63
flgB PRK12622
flagellar basal body rod protein FlgB; Provisional
 19-135 6.58e-05

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183629  Cd Length: 135  Bit Score: 40.29  E-value: 6.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804  19 NLRNQLINANLANVDTPFYKARDIEFETALvNRAneiFKKNDNKELQLAVTEEGHQKPWKFPDPSKSTIYLRDGHLA--R 96
Cdd:PRK12622  19 SLRQSVIADNIANVDTPNFKRSKVTFESEL-ERA---ILNEDKNDLSLIRGNDKHLSGFKELGYLDVKPHRMLDHLStlN 94

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 488943804  97 NDANTVDLDVETTEMSKNTVMITALDGVlrrQSNIFSSI 135
Cdd:PRK12622  95 NNGNNVDIDSEMKALVQNQMMYHLFTNI---QAHHFKSV 130
flgB PRK06797
flagellar basal body rod protein FlgB; Reviewed
 21-131 2.90e-04

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 180697  Cd Length: 135  Bit Score: 38.46  E-value: 2.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804  21 RNQLINANLANVDTPFYKARDIEFETALvNRANEIFKKNDNKEL---QLAVTEEGHQkPWKFPDPSKSTIYLRDGHLARn 97
Cdd:PRK06797  18 KRNTVSSNIANANTPGYKAQDVTFAEQM-NKSSALYKSNAADLKsnpDLYQTNEMHL-PTVNTKNTYAKIQTKSMQTNK- 94

                         90       100       110
                 ....*....|....*....|....*....|....
gi 488943804  98 DANTVDLDVETTEMSKNTVMITALDGVLRRQSNI 131
Cdd:PRK06797  95 DGNSVDVTTEMLDLMKANQLYGISINAINTQYAI 128
flgB PRK06004
flagellar basal body rod protein FlgB; Reviewed
 21-114 9.97e-04

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 235667  Cd Length: 127  Bit Score: 36.99  E-value: 9.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488943804  21 RNQLINANLANVDTPFYKARDI---EFETALVNRANeifkKNDNKELQLAVTEEGHQKPWKFPDPSKSTiyLRDGHLARN 97
Cdd:PRK06004  12 RQKVLAENVANADTPGFRPRDLvepKFDASGQAQAA----GASTGGLGMMRTSASHMAPAGASPSFDAR--RGAGFETRP 85

                         90
                 ....*....|....*..
gi 488943804  98 DANTVDLDVETTEMSKN 114
Cdd:PRK06004  86 AGNAVNLEDEMLKVSDN 102
flgB PRK12627
FlgB family protein;
19-43 2.91e-03

FlgB family protein;


Pssm-ID: 237152 [Multi-domain]  Cd Length: 128  Bit Score: 35.48  E-value: 2.91e-03
                         10        20
                 ....*....|....*....|....*
gi 488943804  19 NLRNQLINANLANVDTPFYKARDIE 43
Cdd:PRK12627  19 GERQAVVARNVANADTPGYRARDLA 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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