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Conserved domains on  [gi|488945747|ref|WP_002856822|]
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MULTISPECIES: flagellar basal body rod protein FlgC [Campylobacter]

Protein Classification

flagellar basal body rod protein FlgC( domain architecture ID 11481481)

flagellar basal body rod protein FlgC forms, together with FlgB and FlgF the proximal portion of the central rod at the core of the flagellar organelle's basal body

Gene Ontology:  GO:0071973

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-164 5.82e-66

flagellar basal body rod protein FlgC; Reviewed


:

Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 197.35  E-value: 5.82e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAtDFDKllneqiNKDNNFLKYENPLNDPSS 80
Cdd:PRK05681   1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAA-ELDP------GQGTGGVKVAKIVEDQSP 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747  81 peeakppiqsvvvdkvvrddkdFRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID 160
Cdd:PRK05681  74 ----------------------FKLVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLT 131


                 ....
gi 488945747 161 LLRG 164
Cdd:PRK05681 132 IGQS 135
 
Name Accession Description Interval E-value
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-164 5.82e-66

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 197.35  E-value: 5.82e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAtDFDKllneqiNKDNNFLKYENPLNDPSS 80
Cdd:PRK05681   1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAA-ELDP------GQGTGGVKVAKIVEDQSP 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747  81 peeakppiqsvvvdkvvrddkdFRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID 160
Cdd:PRK05681  74 ----------------------FKLVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLT 131


                 ....
gi 488945747 161 LLRG 164
Cdd:PRK05681 132 IGQS 135
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
1-163 1.60e-60

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 183.78  E-value: 1.60e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKATdfdkllneqinkdnnflkyenplndpss 80
Cdd:COG1558    1 MSLFSAFDIAGSGLTAQRLRLNVIASNLANANSTRTSDGGPYRRKQVVFEAV---------------------------- 52

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747  81 PEEAKPPIQSVVVDKVVRDDKDFRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID 160
Cdd:COG1558   53 LDRAGSGAAGVRVAGIVEDDSPFRLVYDPGHPDADADGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLE 132


                 ...
gi 488945747 161 LLR 163
Cdd:COG1558  133 IGR 135
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 4-163 1.51e-57

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 176.01  E-value: 1.51e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747    4 LSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKATDFDKllneqinkdnnflkyenplndpsspEE 83
Cdd:TIGR01395   1 FSIFNVSASALSAQRVRMNVVSSNLANADSTRTPAGDPYRRRRPVFEAELFQD-------------------------RA 55

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   84 AKPPIQSVVVDKVVRDDKDFRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAIDLLR 163
Cdd:TIGR01395  56 SRPGGSGVKVAKIVEDDSPFKLVYDPTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEIGR 135
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 116-161 7.28e-12

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 57.66  E-value: 7.28e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 488945747  116 AEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAIDL 161
Cdd:pfam06429  29 QQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-164 5.82e-66

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 197.35  E-value: 5.82e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAtDFDKllneqiNKDNNFLKYENPLNDPSS 80
Cdd:PRK05681   1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAA-ELDP------GQGTGGVKVAKIVEDQSP 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747  81 peeakppiqsvvvdkvvrddkdFRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID 160
Cdd:PRK05681  74 ----------------------FKLVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLT 131


                 ....
gi 488945747 161 LLRG 164
Cdd:PRK05681 132 IGQS 135
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
1-163 1.60e-60

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 183.78  E-value: 1.60e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKATdfdkllneqinkdnnflkyenplndpss 80
Cdd:COG1558    1 MSLFSAFDIAGSGLTAQRLRLNVIASNLANANSTRTSDGGPYRRKQVVFEAV---------------------------- 52

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747  81 PEEAKPPIQSVVVDKVVRDDKDFRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID 160
Cdd:COG1558   53 LDRAGSGAAGVRVAGIVEDDSPFRLVYDPGHPDADADGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLE 132


                 ...
gi 488945747 161 LLR 163
Cdd:COG1558  133 IGR 135
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 4-163 1.51e-57

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 176.01  E-value: 1.51e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747    4 LSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKATDFDKllneqinkdnnflkyenplndpsspEE 83
Cdd:TIGR01395   1 FSIFNVSASALSAQRVRMNVVSSNLANADSTRTPAGDPYRRRRPVFEAELFQD-------------------------RA 55

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   84 AKPPIQSVVVDKVVRDDKDFRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAIDLLR 163
Cdd:TIGR01395  56 SRPGGSGVKVAKIVEDDSPFKLVYDPTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEIGR 135
flgC PRK12630
flagellar basal body rod protein FlgC; Provisional
 1-161 1.89e-41

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183635  Cd Length: 143  Bit Score: 135.73  E-value: 1.89e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKATdfdklLNEQINKDNNflKYENPLN--DP 78
Cdd:PRK12630   1 MKAFDTMRISASGLSAERLRMDTIASNIANATTTRTADGGPYKRKIAVFQEN-----LNKELNKKNG--AYEKKLYgvKA 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747  79 SSPEEAKPPiqsvvvdkvvrddkdFRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSA 158
Cdd:PRK12630  74 VGIVEDKSP---------------FRKVYDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEANVTAINAEKSMFSKA 138


                 ...
gi 488945747 159 IDL 161
Cdd:PRK12630 139 LEI 141
flgC PRK12782
flagellar basal body rod protein FlgC; Reviewed
 9-164 2.29e-31

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 139220  Cd Length: 138  Bit Score: 109.85  E-value: 2.29e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   9 ISGYGLSAQRFRMNVISSNIANANTT-RTAEGGPYRRREVIF-----KATDFDKLLNEQINKDNnflkyenplndpsSPe 82
Cdd:PRK12782  11 IASSGLEAQSTRLRVVSENLANAQSTgRTPGADPYARKTVTFraeldRAAGAASVRVKEIGVDT-------------AP- 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747  83 eakppiqsvvvdkvvrddkdFRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAIDLL 162
Cdd:PRK12782  77 --------------------FRVEYDPGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVAMTIDLL 136


                 ..
gi 488945747 163 RG 164
Cdd:PRK12782 137 RS 138
flgC PRK12631
flagellar basal body rod protein FlgC; Provisional
 1-161 3.11e-23

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183636  Cd Length: 138  Bit Score: 88.86  E-value: 3.11e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAtDFDKLLNEQINKDNNFLKyenplndpsS 80
Cdd:PRK12631   1 MSLFNIFDVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRARHPIFEA-EMAKAQSQQQASQGVAVK---------G 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747  81 PEEAKPPIQSvvvdkvvrddkdfrmKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID 160
Cdd:PRK12631  71 IVESDKPLLK---------------EYSPDHPMADADGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLR 135


                 .
gi 488945747 161 L 161
Cdd:PRK12631 136 M 136
flgC PRK12629
flagellar basal body rod protein FlgC; Provisional
 1-163 6.27e-23

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183634  Cd Length: 135  Bit Score: 88.21  E-value: 6.27e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAtdfdkllnEQINKDNNFlkyeNPLNDPSS 80
Cdd:PRK12629   1 MSNLPIFDVAGSALHAQSVRLSTIASNLANADSVAGSAEATYKPIEPIFQA--------QQSRQDPSL----TSVNVKEI 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747  81 PEEAKPPIQsvvvdkvvrddkdfrmKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID 160
Cdd:PRK12629  69 TTTNAPPIR----------------RYEPGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLT 132


                 ...
gi 488945747 161 LLR 163
Cdd:PRK12629 133 MGR 135
flgC PRK06802
flagellar basal body rod protein FlgC; Reviewed
 1-161 1.50e-20

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 180702  Cd Length: 141  Bit Score: 82.15  E-value: 1.50e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSS 80
Cdd:PRK06802   1 MSFNDIYRIAGSAMTAQTIRLNTVASNLANAESPAASAATAYKARSPVFAAVYSARTLADPRGVQGAQVQVLDVVQVGGS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747  81 PEeakppiqsvvvdkvvrddkdfrmKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID 160
Cdd:PRK06802  81 VK-----------------------RYEPNNPLANPQGYVFYPDVNVVEEMADMMSASRSFETNVEVLNSVKSMQQSLLK 137


                 .
gi 488945747 161 L 161
Cdd:PRK06802 138 L 138
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 3-163 1.10e-17

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 74.46  E-value: 1.10e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   3 YLSDFDISGYGLSAQRFRMNVISSNIANANTTrtaeggPYRRREVIFK-ATDFDkllneqinkdnnflkyenplnDPSSP 81
Cdd:PRK12632   4 FSKSLSVSASGMRAQALRLRHVSENIANADTP------GYRRKTVSFQeARDFD---------------------PGSGL 56

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747  82 EEAKPPiqsvvvdkvVRDDKDFRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAIDL 161
Cdd:PRK12632  57 VSTGPV---------RLDRSELPRIYDPSHPLADETGYYDGSNVDLVVEIADAREAQRSYEANLRMFDQARQMSSSLLDL 127


                 ..
gi 488945747 162 LR 163
Cdd:PRK12632 128 LR 129
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 116-161 7.28e-12

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 57.66  E-value: 7.28e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 488945747  116 AEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAIDL 161
Cdd:pfam06429  29 QQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
flgC PRK12628
flagellar basal body rod protein FlgC; Provisional
 1-161 9.17e-12

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 79089  Cd Length: 140  Bit Score: 59.09  E-value: 9.17e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   1 MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRRREVIFKAT--DFDKLLNEQINKDnnfLKYENPLNDP 78
Cdd:PRK12628   1 MSLNAIFDIAASAMTAETVRLTTSAGNMSNANVEAGSPDEVYQAKYPVFKSVqeNANQWMGEQIKAG---VKLDGIYESD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747  79 SSPEEakppiqsvvvdkvvrddkdfrmKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSA 158
Cdd:PRK12628  78 AEPHR----------------------RYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRT 135


                 ...
gi 488945747 159 IDL 161
Cdd:PRK12628 136 LQL 138
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-159 8.90e-09

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 51.06  E-value: 8.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747   1 MAYLSD--FDISGYGLSAQRFRMNVISSNIANANTtrtaeggP-YRRREVifkatDFDKLLNEQINKDNNF--LKYENPL 75
Cdd:COG1815    1 MSILFDktFGLLEKALDLRSLRQEVIASNIANADT-------PgYKARDV-----DFEAALKAALGGGSAGlaLATTNPR 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488945747  76 NDPSSPEEAKPPiqsvvvdkvvrddkdfRMKYDPSH---PDANaegyvaypNVNPVIEMADLIEATRAYQANVSAFTSAK 152
Cdd:COG1815   69 HIPGSAGSSVSP----------------EVLYRTPTqpsLDGN--------TVDLDEEMAKLAENALQYQAALTFLNKKF 124


                 ....*..
gi 488945747 153 TIAQSAI 159
Cdd:COG1815  125 SMLKTAI 131
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
124-163 2.09e-07

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 48.66  E-value: 2.09e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 488945747 124 NVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAIDLLR 163
Cdd:COG4786  221 NVDVVEEMVDMIEAQRAYEANSKVIQTADEMLGKANNLRG 260
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
13-51 5.24e-06

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 44.80  E-value: 5.24e-06
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 488945747  13 GLSAQRFRMNVISSNIANANTTrtaeGgpYRRREVIFKA 51
Cdd:COG4786    7 GMLAQQTRLDVISNNLANVNTT----G--FKRDRAVFED 39
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 116-162 7.98e-06

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 44.27  E-value: 7.98e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 488945747  116 AEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAIDLL 162
Cdd:TIGR02488 213 RQGFLEASNVNVVQEMVDMITAQRAYEMNSKAIQASDQMLQTVSQLL 259
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 5-63 1.70e-05

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 43.49  E-value: 1.70e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 488945747    5 SDFDISGYGLSAQRFRMNVISSNIANANTtrtaEGgpYRRREVIFKATDFDKLLNEQIN 63
Cdd:TIGR02492   1 SLLNIAKSGLSASQIALSVTSNNIANANT----PG--YSRQRAVLTAVPAGGQGGKQIG 53
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 13-51 2.70e-05

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 42.62  E-value: 2.70e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 488945747   13 GLSAQRFRMNVISSNIANANTTrtaeGgpYRRREVIFKA 51
Cdd:TIGR03506   9 GLNAQSSALDVIANNIANANTT----G--FKRSRAEFQD 41
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
13-62 3.01e-05

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 42.94  E-value: 3.01e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 488945747  13 GLSAQRFRMNVISSNIANANTtrtaEGgpYRRREVIFKATDFDKLLNEQI 62
Cdd:COG1256   12 GLNAAQRALDVTSHNIANANT----PG--YSRQRVVLSAAGPTATGAGQV 55
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 118-144 7.13e-05

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 41.47  E-value: 7.13e-05
                          10        20
                  ....*....|....*....|....*..
gi 488945747  118 GYVAYPNVNPVIEMADLIEATRAYQAN 144
Cdd:TIGR03506 205 GALEGSNVDLAEELVNMISAQRAYQAN 231
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
13-34 8.35e-05

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 41.70  E-value: 8.35e-05
                         10        20
                 ....*....|....*....|..
gi 488945747  13 GLSAQRFRMNVISSNIANANTT 34
Cdd:COG1749   11 GLNAASTALDVIGNNIANSNTV 32
Flg_bb_rod pfam00460
Flagella basal body rod protein;
7-35 9.87e-05

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 37.93  E-value: 9.87e-05
                          10        20
                  ....*....|....*....|....*....
gi 488945747    7 FDISGYGLSAQRFRMNVISSNIANANTTR 35
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPG 29
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 118-142 9.95e-05

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 39.15  E-value: 9.95e-05
                          10        20
                  ....*....|....*....|....*
gi 488945747  118 GYVAYPNVNPVIEMADLIEATRAYQ 142
Cdd:TIGR02490  65 GYLEGSNVNAVSEMVDMIEAQRAYE 89
flgF PRK12642
flagellar basal-body rod protein FlgF;
116-164 1.28e-04

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 40.80  E-value: 1.28e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 488945747 116 AEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAIDLLRG 164
Cdd:PRK12642 191 VQGYLEGSNVNAMTEMTQLISVSRAFESVSSLMRQSESSVSEAIKTLGG 239
flgE PRK05682
flagellar hook protein FlgE; Validated
 7-34 1.62e-04

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 40.59  E-value: 1.62e-04
                         10        20
                 ....*....|....*....|....*...
gi 488945747   7 FDISGYGLSAQRFRMNVISSNIANANTT 34
Cdd:PRK05682   3 FNTAVSGLNAASNRLDVIGNNIANANTT 30
flgF PRK12689
flagellar basal-body rod protein FlgF;
108-162 1.64e-04

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 40.50  E-value: 1.64e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 488945747 108 DPSHPDANA---EGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAIDLL 162
Cdd:PRK12689 191 PARPADTKArveQGYIERSNVNPVLEMTRMMEVNRTYTQVSSMLQQQSDLRKTAIERL 248
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 103-164 2.43e-04

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 39.84  E-value: 2.43e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488945747 103 FRMKyDPSHPDANAE-----GYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAIDLLRG 164
Cdd:PRK12640 180 FRTT-DGAPAPADPTvrvmsGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADENAQAANQLLRM 245
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 9-34 3.37e-04

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 39.46  E-value: 3.37e-04
                         10        20
                 ....*....|....*....|....*.
gi 488945747   9 ISGYGLSAQRFRMNVISSNIANANTT 34
Cdd:PRK12693   7 IAKTGLDAQQTNIDVISNNLANVNTT 32
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 116-162 6.73e-04

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 38.69  E-value: 6.73e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 488945747 116 AEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAIDLL 162
Cdd:PRK12693 215 RQGFLETSNVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 117-163 3.08e-03

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 36.75  E-value: 3.08e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 488945747 117 EGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAIDLLR 163
Cdd:PRK12692 216 QGYLEGSNVDPVKEITSLITAQRAFEMNSKVIQAADEMAGTVSKGIR 262
flgK PRK07739
flagellar hook-associated protein FlgK; Validated
 13-53 3.75e-03

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236084 [Multi-domain]  Cd Length: 507  Bit Score: 36.92  E-value: 3.75e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 488945747  13 GLSAQRFRMNVISSNIANANTtrtaEGgpYRRREVIFKATD 53
Cdd:PRK07739  14 GLFAQQAALYVTGHNIANANT----PG--YTRQRVNLAATP 48
flgF PRK12690
flagellar hook-basal body complex protein;
112-143 4.60e-03

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 36.20  E-value: 4.60e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 488945747 112 PDANA---EGYVAYPNVNPVIEMADLIEATRAYQA 143
Cdd:PRK12690 183 PAEGArllQGFLEGSNVNPVSEIARMIEVQRAYEL 217
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
130-163 6.28e-03

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 35.92  E-value: 6.28e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 488945747 130 EMADLIEATRAYQANVSAFTSAKTIAQSAIDLLR 163
Cdd:COG1749  381 ELVNMIVAQRAYQANAKVITTSDEMLQTLVNLKR 414
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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