|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
8-520 |
3.95e-180 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 514.00 E-value: 3.95e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 8 YRLIIFIAVFIFGVAFSLPSF-----------LQSERGAKINLGLDLQGGLYMLLGVDNEEAVKSKIKSIASSLSYSFNK 76
Cdd:PRK05812 1 WKYLLILLVLLIGLLYALPNLrgalapatpewLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 77 ENILNDGLnthddilEFTLLDNADIAKVENLLKEIkginiqsenmhykISFTSKEVKNIENFALLQAVETIRNRLDQFGL 156
Cdd:PRK05812 81 KKIRYGGV-------EITFRDAEDRDKAIALLRKL-------------SSLTEAELKEITEEALEQAIEIIRNRVNELGV 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 157 AEPTVAKQGDDKILVELAGIKtkeDELRAKERITKAAHLQLMEVDdskmgqastmsdaeaasyglilvpdsrnpnlkytl 236
Cdd:PRK05812 141 AEPVIQRQGADRIVVELPGVQ---DTARAKEILGKTATLEFRLVP----------------------------------- 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 237 ksiPILDGSMLTDARVGLsDKSNYPVINFTLNAEGSKKFADYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAF 316
Cdd:PRK05812 183 ---VILTGDDITDASASF-DQQGQPVVNITLDSEGAKKFADITKANIGKRMAIVLDGEVISAPVIQSAITGGSAQITGNF 258
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 317 TQEEARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVA 396
Cdd:PRK05812 259 TAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLVLILA 338
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 397 VMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTG 476
Cdd:PRK05812 339 VLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTG 418
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 488946888 477 AVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKNNNTRFW 520
Cdd:PRK05812 419 PVKGFAVTLGIGILTSMFTAITVTRALVNLLYGRRKRLKKLSIG 462
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
1-510 |
2.53e-154 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 447.25 E-value: 2.53e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 1 MRNSKINYRLIIFIAVFIFGVafslpsFLQSERGAKINLGLDLQGGLYMLLGVDNEEAvkskiksiasslsysfnkenil 80
Cdd:COG0342 1 MKAKFLLWRLLLLLLVVALSL------VAPNGPAKPIKLGLDLQGGVHLLLEVDTDAA---------------------- 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 81 ndglnthddileftlLDNADiakvenllkeikginiqsenmhykisftsKEVKNIENFALLQAVETIRNRLDQFGLAEPT 160
Cdd:COG0342 53 ---------------LDEDG-----------------------------DGIREVTEEALDQAIEILRNRVNELGVSEPV 88
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 161 VAKQGDDKILVELAGIKtkeDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEaasygliLVPDSRNPnlKYTLKSIP 240
Cdd:COG0342 89 IQRQGDDRIVVELPGVQ---DPAEAKELLGKTAKLEFRLVDDSADAQAAVPAGSE-------LLPCRDGQ--PYLLLGPV 156
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 241 ILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFADYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEE 320
Cdd:COG0342 157 VLTGDDLTDASAGFDQQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVLDGEVISAPVIQEPITGGSAQITGSFTVEE 236
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 321 ARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVMAM 400
Cdd:COG0342 237 AQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLSL 316
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKG 480
Cdd:COG0342 317 LGATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVKG 396
|
490 500 510
....*....|....*....|....*....|
gi 488946888 481 FAVTLGIGIVVSMITAILGTHGMFDYFMQR 510
Cdd:COG0342 397 FAVTLILGILISMFTAVPVTRPLLNLLLGR 426
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
123-504 |
2.67e-138 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 405.13 E-value: 2.67e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 123 YKISFTSKEVKNIENFALLQAVETIRNRLDQFGLAEPTVAKQGDDKILVELAGIktkEDELRAKERITKAAHLQLMEVDD 202
Cdd:TIGR01129 21 VVLKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGV---TDTSRAKDILGGTATLEFRLVDD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 203 SKMGQASTMSDAEAAsyGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFADYTGAN 282
Cdd:TIGR01129 98 ESTSPDDALAGNVPA--GSELLDSRSGDPKYYLLKKSPVLTGDHITDATSSVDQRSGQPVVSFSLDSEGARIFGDFTQAN 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 283 VGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALI 362
Cdd:TIGR01129 176 IGKRLAIVLDNKVVSAPTIQEAITGGSGQITGNFTAEEANDLALVLRSGALPAPLQILEERTIGPSLGADSIEAGIKAGL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 363 GASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIR 442
Cdd:TIGR01129 256 IGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIYERIKEELRLGKSVR 335
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488946888 443 VSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMF 504
Cdd:TIGR01129 336 QAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLLL 397
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
317-498 |
3.37e-10 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 62.87 E-value: 3.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 317 TQEEARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVA 396
Cdd:NF037998 407 TETIARTIEALINQTTSGFTFKVNGISEFNPVVTLLMLIASIIFLLILAIAIMIYLLFAYRLLGLFAIIIALTSISLTLY 486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 397 VMAMFGATLTLPGMAGLVLTVGMAVDANVIINERI-RELLRDGVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGT 475
Cdd:NF037998 487 SPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFkKHLYKNKRSIEESFKIANKETIGIIVDALVVLLIPNLSLFWIGS 566
|
170 180
....*....|....*....|...
gi 488946888 476 GAVKGFAVTLGIGIVVSMITAIL 498
Cdd:NF037998 567 NSIKSFATILLVGVIISLVLVII 589
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
344-498 |
2.51e-06 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 47.99 E-value: 2.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 344 SIGPSLGADSIKMSMIALIGASVFIVVFMMMYYG-VAGIFANIAMLVNVLVVVAVMAMFGATLTLPGMAGLVLTVGMAVD 422
Cdd:pfam02355 20 TVGPTVGSELARKAVLALLFALLLILIYVGLRFEwRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTIIGYSVN 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488946888 423 ANVIINERIRELLRD--GVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAIL 498
Cdd:pfam02355 100 DTVVVFDRVRENLRKktRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVGTYSSIF 177
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
8-520 |
3.95e-180 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 514.00 E-value: 3.95e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 8 YRLIIFIAVFIFGVAFSLPSF-----------LQSERGAKINLGLDLQGGLYMLLGVDNEEAVKSKIKSIASSLSYSFNK 76
Cdd:PRK05812 1 WKYLLILLVLLIGLLYALPNLrgalapatpewLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 77 ENILNDGLnthddilEFTLLDNADIAKVENLLKEIkginiqsenmhykISFTSKEVKNIENFALLQAVETIRNRLDQFGL 156
Cdd:PRK05812 81 KKIRYGGV-------EITFRDAEDRDKAIALLRKL-------------SSLTEAELKEITEEALEQAIEIIRNRVNELGV 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 157 AEPTVAKQGDDKILVELAGIKtkeDELRAKERITKAAHLQLMEVDdskmgqastmsdaeaasyglilvpdsrnpnlkytl 236
Cdd:PRK05812 141 AEPVIQRQGADRIVVELPGVQ---DTARAKEILGKTATLEFRLVP----------------------------------- 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 237 ksiPILDGSMLTDARVGLsDKSNYPVINFTLNAEGSKKFADYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAF 316
Cdd:PRK05812 183 ---VILTGDDITDASASF-DQQGQPVVNITLDSEGAKKFADITKANIGKRMAIVLDGEVISAPVIQSAITGGSAQITGNF 258
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 317 TQEEARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVA 396
Cdd:PRK05812 259 TAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLVLILA 338
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 397 VMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTG 476
Cdd:PRK05812 339 VLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTG 418
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 488946888 477 AVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKNNNTRFW 520
Cdd:PRK05812 419 PVKGFAVTLGIGILTSMFTAITVTRALVNLLYGRRKRLKKLSIG 462
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
1-510 |
2.53e-154 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 447.25 E-value: 2.53e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 1 MRNSKINYRLIIFIAVFIFGVafslpsFLQSERGAKINLGLDLQGGLYMLLGVDNEEAvkskiksiasslsysfnkenil 80
Cdd:COG0342 1 MKAKFLLWRLLLLLLVVALSL------VAPNGPAKPIKLGLDLQGGVHLLLEVDTDAA---------------------- 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 81 ndglnthddileftlLDNADiakvenllkeikginiqsenmhykisftsKEVKNIENFALLQAVETIRNRLDQFGLAEPT 160
Cdd:COG0342 53 ---------------LDEDG-----------------------------DGIREVTEEALDQAIEILRNRVNELGVSEPV 88
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 161 VAKQGDDKILVELAGIKtkeDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEaasygliLVPDSRNPnlKYTLKSIP 240
Cdd:COG0342 89 IQRQGDDRIVVELPGVQ---DPAEAKELLGKTAKLEFRLVDDSADAQAAVPAGSE-------LLPCRDGQ--PYLLLGPV 156
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 241 ILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFADYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEE 320
Cdd:COG0342 157 VLTGDDLTDASAGFDQQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVLDGEVISAPVIQEPITGGSAQITGSFTVEE 236
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 321 ARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVMAM 400
Cdd:COG0342 237 AQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLSL 316
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKG 480
Cdd:COG0342 317 LGATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVKG 396
|
490 500 510
....*....|....*....|....*....|
gi 488946888 481 FAVTLGIGIVVSMITAILGTHGMFDYFMQR 510
Cdd:COG0342 397 FAVTLILGILISMFTAVPVTRPLLNLLLGR 426
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
123-504 |
2.67e-138 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 405.13 E-value: 2.67e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 123 YKISFTSKEVKNIENFALLQAVETIRNRLDQFGLAEPTVAKQGDDKILVELAGIktkEDELRAKERITKAAHLQLMEVDD 202
Cdd:TIGR01129 21 VVLKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGV---TDTSRAKDILGGTATLEFRLVDD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 203 SKMGQASTMSDAEAAsyGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFADYTGAN 282
Cdd:TIGR01129 98 ESTSPDDALAGNVPA--GSELLDSRSGDPKYYLLKKSPVLTGDHITDATSSVDQRSGQPVVSFSLDSEGARIFGDFTQAN 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 283 VGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALI 362
Cdd:TIGR01129 176 IGKRLAIVLDNKVVSAPTIQEAITGGSGQITGNFTAEEANDLALVLRSGALPAPLQILEERTIGPSLGADSIEAGIKAGL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 363 GASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIR 442
Cdd:TIGR01129 256 IGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIYERIKEELRLGKSVR 335
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488946888 443 VSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMF 504
Cdd:TIGR01129 336 QAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLLL 397
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
1-525 |
1.37e-119 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 369.18 E-value: 1.37e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 1 MRNSkinyRLIIFIAVF--IFGVAFSLPSFLQSErgakINLGLDLQGGLYMLLGVDneeavkskiksiasslsysfnken 78
Cdd:PRK13024 1 MRNK----RWVIFFLTLllLIGIYYASPKFVTKN----INLGLDLQGGFEVLLEVS------------------------ 48
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 79 ilndglnthddileftlldnadiakvenllkeikginiqsenmhykisfTSKEVKNIENFALLQAVETIRNRLDQFGLAE 158
Cdd:PRK13024 49 -------------------------------------------------PADKGKKADREALDSTVEVLRNRIDGLGVSE 79
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 159 PTVAKQGDDKILVELAGIKtkeDELRAKERITKAAHLQLMEVDDSkmgqastmSDAEAASYGLILVPDSRNPNLKYTLks 238
Cdd:PRK13024 80 PNIQREGNNRIRVELPGVQ---DPERARELLGSTAKLTFRDVTDP--------PPPGVGGPVVGPDEGKDTAVLNPVL-- 146
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 239 ipiLDGSMLTDARVGLS-DKSNYPVINFTLNAEGSKKFADYTGANV-----GKRLAIVLDNKVYSAPSINERIGGGSGQI 312
Cdd:PRK13024 147 ---LSGDDLTDAGAKFDqDQTNRPSVSLKLKSEGAKKWAKVTEKNSkkgppNNRIAIVLDPKVISAPTVNQPINGGSVQI 223
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 313 SGAFTQEEARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVL 392
Cdd:PRK13024 224 SGNFTVEEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFALIFLFMLVYYGLPGLIANIALLLYIF 303
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 393 VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYA 472
Cdd:PRK13024 304 LTLGALSSLGAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFF 383
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 488946888 473 YGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRiekNNNTRFWFGYRR 525
Cdd:PRK13024 384 FGTGPVKGFATTLIIGILASLFTAVFLTRLLLELLVKR---GDKKPFLFGVKK 433
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
10-510 |
8.52e-102 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 325.14 E-value: 8.52e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 10 LIIFIAVFIfGVAFSLPSFLQSERGA---------KINLGLDLQGGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENIL 80
Cdd:PRK14726 10 ILIWLVVLA-GVAIAAPNLLSEAQLAslpswlphrQVTLGLDLQGGSHIVLKVERSDIVKDRLEETVANIRNALRDAGIR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 81 NDGLNTHDDILEFTLLDNADIAKVENLLKEIK---------GINIQ------SENMHYKISFTSKEVKNIENFALLQAVE 145
Cdd:PRK14726 89 YTGLTGNGQTVQVRITDPAQTQAAVDALKPLTapvsagglgGSSIQeltlqeGGEGQLRLQLTDAGIDYRVSSALTQSIE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 146 TIRNRLDQFGLAEPTVAKQGDDKILVELAGIktkEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAASYGLILVP 225
Cdd:PRK14726 169 VVRRRVAELGTTEPLIRRQGDDRIVVQVPGL---VDPQRLKNLLNQPAKLSFRLVDSSMPAQEALNGRPPATSEVLYSLD 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 226 DsrnPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFADYTGANVGKRLAIVLDNKVYSAPSINERI 305
Cdd:PRK14726 246 D---PPVPYLVERRAFVSGENLVDAQPVFDPQTNEPVVTFRLDAEGTQRFAQATQQNVGKHFAIVLDGQVISAPVIDEAI 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 306 GGGSGQISGAFTQEEARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANI 385
Cdd:PRK14726 323 TGGEGRISGNFSEQGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGFLGVIAVI 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 386 AMLVNVLVVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIIDSNITSLV 465
Cdd:PRK14726 403 ALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILI 482
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 488946888 466 TSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQR 510
Cdd:PRK14726 483 AAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLVAVWLRR 527
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
19-503 |
1.22e-81 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 265.78 E-value: 1.22e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 19 FGVAFSLPSFLQSERGAKINLGLDLQGGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENIlnDGLNTH---DDILEFTL 95
Cdd:PRK12933 108 LSLASAAPKWLQNMGFSPIKLGLDLRGGVQFLLDVDVDPVYQEQRDALVDSVRQFLREQRI--RGVSVRlddSDQLAVTT 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 96 LDNADIAKVENLLKE-IKGINI-QSENMHYKISFTSKEVKNIENFALLQAVETIRNRLDQFGLAEPTVAKQGDDKILVEL 173
Cdd:PRK12933 186 PDNDARSAVRQFIQQnYPGWQVtNSDDRGLQLKLSQQEKTKFRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIEL 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 174 AGIKtkeDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAASygLILVPDsrnpnlkytlksiPILDGSMLTDARVG 253
Cdd:PRK12933 266 PGVQ---DPAAAKNVIGATASLAFYEVKESGSVNAKVLKDKNGRP--VYVARR-------------PVLGGEHIVDARAS 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 254 LsDKSNYPVINFTLNAEGSKKFADYTGANVGKRLA-------------IVLDNKVYSAPSINERIGGGSGQISgAFTQEE 320
Cdd:PRK12933 328 L-GEMGMAEVNISLDRAGGKKMSDFSRDNIGKPMAtsyseysrdeqgkTKQSEEVISVATIQSQLGDRFRITG-AGSYQE 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 321 ARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVMAM 400
Cdd:PRK12933 406 AQQLALLLRAGSLTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMALWYRRLGWVANVALIANMVCLFGLLAL 485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 401 F-GATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVK 479
Cdd:PRK12933 486 IpGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQ 565
|
490 500
....*....|....*....|....
gi 488946888 480 GFAVTLGIGIVVSMITAILGTHGM 503
Cdd:PRK12933 566 GFALTLGLGLLTSMFTGIFASRAL 589
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
131-500 |
2.11e-57 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 204.08 E-value: 2.11e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 131 EVKNIENFALLQAVETIRNRLDQFGLAEPTVAKQGDDKILVELAGIKtkeDELRAKERITKAAHLQLMEVDDSkMGQAST 210
Cdd:PRK13023 60 QVQNAGKTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLY---DAQLLKDILTIRGNLSFRAMDDT-MSPDDA 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 211 MSDAEAASYGLILVPDsrNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFADYTGANVGKRLAIV 290
Cdd:PRK13023 136 IRGTPPADSEIVYSFD--DPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIV 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 291 LDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVV 370
Cdd:PRK13023 214 VDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 371 FMMMYYGVAGIFANIAMLVNVLVVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYK 450
Cdd:PRK13023 294 FMVLSYGILGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFY 373
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 488946888 451 NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGT 500
Cdd:PRK13023 374 RALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFT 423
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
267-497 |
5.97e-43 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 151.26 E-value: 5.97e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 267 LNAEGSKKFADYTGANVGKrlAIVLDN-KVYSAPSINerigggsgqisgaftqeeardvavalrsgallapvklleqrSI 345
Cdd:TIGR00916 1 LDEEGAKIFADFAANIGKP--AIVLDNaKVISAPVVG-----------------------------------------TV 37
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 346 GPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVM-AMFGATLTLPGMAGLVLTVGMAVDAN 424
Cdd:TIGR00916 38 GPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVlSLFGATLTLPGIAGLLTIIGYSVDDT 117
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488946888 425 VIINERIRELLRD--GVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAI 497
Cdd:TIGR00916 118 VVIFDRIREELRKykGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
263-510 |
5.90e-37 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 146.16 E-value: 5.90e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 263 INFTLNAEGSkkfadytgANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGaFTQEEARDVAVALRSGALLAPVKLLEQ 342
Cdd:PRK12911 826 VSGTKNGQFS--------GGRGWRMAVVLDGYVVSDPVLNVPLKDHASVSGK-FSHREVHRLATDLKSGAMSFVPEVLSE 896
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 343 RSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVMAMFGATLTLPGMAGLVLTVGMAVD 422
Cdd:PRK12911 897 EVISPELGKSQRTQGIISVCLGLAVLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVD 976
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 423 ANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHG 502
Cdd:PRK12911 977 ANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKF 1056
|
....*...
gi 488946888 503 MFDYFMQR 510
Cdd:PRK12911 1057 FFMIWMNK 1064
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
142-492 |
2.48e-21 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 96.10 E-value: 2.48e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 142 QAVETIRNRLDQFGLAEPTVAKQGDDKILVELAGiktkEDELRAKERITKAAhlqLMEVDdskmgqastmsdaeaasygl 221
Cdd:PRK08343 67 LVVEILESRLNALGLKDIKVYPVGDQYIVVEVPG----VDADTAKEIIEKQG---VFEAR-------------------- 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 222 ILVPDSRNPNLkYTLKSIpildgsmltdARVGL---SDKSNYPVINFTLNAEGSKKFAD------YTGANVGKRLAIVLD 292
Cdd:PRK08343 120 IQTPGNNNETV-LTGDDI----------ESVGSpsqDPSGGAWGVPFTLSEDGAEKFAEvakgkgATDDPSGHPLDMYLD 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 293 NKVYSAPSINER----IGGGSGQISGAFT------QEEARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALI 362
Cdd:PRK08343 189 GELIYAAPLSPDlasgLASGPVVITVGSTgtteeaKEEAKELYIHLRSGALPVKLDIEGSGSVSPSLGEQFKKGSLIAGL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 363 GAsvFIVVFMMMY--YGVAGI-----------------FANIamlvnvlvvvavmamFGATLTLPGMAGLVLTVGMAVDA 423
Cdd:PRK08343 269 LA--LLAVALVVFlrYREPRIalpmvitslseviiilgFAAL---------------IGWQLDLASIAGIIAVIGTGVDD 331
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488946888 424 NVIINErirELLRDG-VNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVT--LG--IGIVVS 492
Cdd:PRK08343 332 LIIITD---EVLHEGkVPSRKVFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITtiLGvlIGVLIT 402
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
317-498 |
3.37e-10 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 62.87 E-value: 3.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 317 TQEEARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVA 396
Cdd:NF037998 407 TETIARTIEALINQTTSGFTFKVNGISEFNPVVTLLMLIASIIFLLILAIAIMIYLLFAYRLLGLFAIIIALTSISLTLY 486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 397 VMAMFGATLTLPGMAGLVLTVGMAVDANVIINERI-RELLRDGVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGT 475
Cdd:NF037998 487 SPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFkKHLYKNKRSIEESFKIANKETIGIIVDALVVLLIPNLSLFWIGS 566
|
170 180
....*....|....*....|...
gi 488946888 476 GAVKGFAVTLGIGIVVSMITAIL 498
Cdd:NF037998 567 NSIKSFATILLVGVIISLVLVII 589
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
319-491 |
3.78e-08 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 54.67 E-value: 3.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 319 EEARDVAVALRSG--ALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMY----YGVA------------- 379
Cdd:COG0341 95 GESAEEVEKVRAAlkEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRfewrFAVGavvallhdvlitl 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 380 GIFAniamlvnvlvvvavmaMFGATLTLPGMAGLvLTV-GMAVDANVIINERIRELLRdgvnirvsieqGYKNA-MSAII 457
Cdd:COG0341 175 GIFS----------------LFGLEFDLTFIAAL-LTIiGYSLNDTVVVFDRIRENLR-----------KYRKMtLAEII 226
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 488946888 458 DSNIT-----SLVTSV-------ALYAYGTGAVKGFAVTLGIGIVV 491
Cdd:COG0341 227 NLSINqtlsrTINTSLttllvvlALLFFGGETLRDFALALLIGIIV 272
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
410-497 |
1.64e-06 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 49.85 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 410 MAGLVLTVGMAVDANVIINERIRELLRDGVNIRVS--IEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGI 487
Cdd:PRK13021 182 LAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQeiNNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFI 261
|
90
....*....|
gi 488946888 488 GIVVSMITAI 497
Cdd:PRK13021 262 GILTGTFSSI 271
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
344-498 |
2.51e-06 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 47.99 E-value: 2.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 344 SIGPSLGADSIKMSMIALIGASVFIVVFMMMYYG-VAGIFANIAMLVNVLVVVAVMAMFGATLTLPGMAGLVLTVGMAVD 422
Cdd:pfam02355 20 TVGPTVGSELARKAVLALLFALLLILIYVGLRFEwRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTIIGYSVN 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488946888 423 ANVIINERIRELLRD--GVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAIL 498
Cdd:pfam02355 100 DTVVVFDRVRENLRKktRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVGTYSSIF 177
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
344-491 |
8.66e-06 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 47.27 E-value: 8.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 344 SIGPSLGADSIKMSMIALIGASVFIvvfmMMYYGVA-----GIFANIAMLVNVLVVVAVMAMFGATLTLPGMAGLVLTVG 418
Cdd:TIGR00966 87 AVGPSVGGELARKAVLALLAALVLI----LIYITVRfewrfALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIG 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 419 MAVDANVIINERIRELLR--------DGVNIrvSIEQgyknAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIV 490
Cdd:TIGR00966 163 YSINDTVVVFDRIRENLRkytrktftEVINL--SINQ----TLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVI 236
|
.
gi 488946888 491 V 491
Cdd:TIGR00966 237 V 237
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
401-498 |
6.38e-05 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 45.62 E-value: 6.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIIdsnITSLVTSVALYAYGT---GA 477
Cdd:COG1033 266 LGIPLSPLTILVPPLLLAIGIDYGIHLLNRYREERRKGLDKREALREALRKLGPPVL---LTSLTTAIGFLSLLFsdiPP 342
|
90 100
....*....|....*....|.
gi 488946888 478 VKGFAVTLGIGIVVSMITAIL 498
Cdd:COG1033 343 IRDFGIVAAIGVLLAFLTSLT 363
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
319-497 |
9.20e-05 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 45.48 E-value: 9.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 319 EEARDVAVALRSGALLAPVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYG----VAGIFANIAMLVNVLVV 394
Cdd:PRK14726 636 ENAEQSAVTLVRGELEDDYDFRRVEVVGPAVSGELTMAATLGVLAALAAILIYIWIRFEwqfaVGAIIATLHDVILTLGL 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 395 VAVMamfGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRD------GVNIRVSIEQgyknAMSAIIDSNITSLVTSV 468
Cdd:PRK14726 716 FVLT---GIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRykkmplPILIDASINQ----TLSRTVLTSATTLLALL 788
|
170 180
....*....|....*....|....*....
gi 488946888 469 ALYAYGTGAVKGFAVTLGIGIVVSMITAI 497
Cdd:PRK14726 789 ALYLFGGEVIRSFTFAMLFGVAVGTFSSI 817
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
352-498 |
2.73e-04 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 43.70 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 352 DSIKMSMI-ALIGASVFIVVFMMMYY-----GVAGIFANIAMLvnvlvvvavmamfGATLTLPGMAG----------LVL 415
Cdd:COG1033 601 ESVIESQIrSLLLALLLIFLLLLLAFrslrlGLISLIPNLLPI-------------LLTFGLMGLLGiplniatavvASI 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 416 TVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIIdsnITSLVTSV---ALYAYGTGAVKGFAVTLGIGIVVS 492
Cdd:COG1033 668 ALGIGVDYTIHFLSRYREERRKGGDLEEAIRRALRTTGKAIL---FTSLTLAAgfgVLLFSSFPPLADFGLLLALGLLVA 744
|
....*.
gi 488946888 493 MITAIL 498
Cdd:COG1033 745 LLAALL 750
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
414-520 |
2.80e-04 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 43.05 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 414 VLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVV-- 491
Cdd:pfam03176 208 VLLIAVGTDYALFLVSRYREELRAGEDREEAVIRAVRGTGKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVdv 287
|
90 100 110
....*....|....*....|....*....|...
gi 488946888 492 ----SMITAILGTHGMFDYFMQRieKNNNTRFW 520
Cdd:pfam03176 288 laalTLLPALLALLGRWGLWPPK--RDRTARWW 318
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
344-491 |
3.55e-04 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 43.30 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 344 SIGPSLGADSIKMSMIALIGASVFIVVFMM----MYYGVAGIFANIAMLVNVLVVVAVmamFGATLTLPGMAGLVLTVGM 419
Cdd:PRK13024 566 TVGPTVGKELARNAIIAVLIALIGILLYILirfeWTFSLGAILALLHDVLIVIGFFSL---FRLEVDLTFIAAILTIIGY 642
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488946888 420 AVDANVIINERIRELLR--DGVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVV 491
Cdd:PRK13024 643 SINDTVVVFDRIRENLRlyKKKDLREIVNKSINQTLSRTINTSLTTLLVLLALLIFGGSSLRNFSLALLVGLIV 716
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
401-498 |
7.03e-04 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 42.30 E-value: 7.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIREllrdgvNIRVsieqgYKNA-MSAIIDSNI---------TSLVTSVA- 469
Cdd:PRK13023 625 FRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRE------NLRR-----YKSApLPAIIDASInqtlsrtllTSFVTFLAh 693
|
90 100 110
....*....|....*....|....*....|.
gi 488946888 470 --LYAYGTGAVKGFAVTLGIGIVVSMITAIL 498
Cdd:PRK13023 694 vpLYAFGGSEIRMFALALSVGIIVASYSSIF 724
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
356-500 |
1.26e-03 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 41.75 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 356 MSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVMAMFGATLTLPGMAGLV-LTVGMAVDANVIINERIREL 434
Cdd:TIGR00921 569 MRRMTIAGAILVLMILLAVFRNPIKAVFPLIAIGSGILWAIGLMGLRGIPSFLAMATTIsIILGLGMDYSIHLAERYFEE 648
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488946888 435 lRDGVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGT 500
Cdd:TIGR00921 649 -RKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVF 713
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
402-498 |
9.10e-03 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 38.66 E-value: 9.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 402 GATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYGTGAVKGF 481
Cdd:TIGR00921 242 GIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEF 321
|
90
....*....|....*..
gi 488946888 482 AVTLGIGIVVSMITAIL 498
Cdd:TIGR00921 322 GLGLVAGLITAYLLTLL 338
|
|
| PRK15127 |
PRK15127 |
multidrug efflux RND transporter permease subunit AcrB; |
354-526 |
1.00e-02 |
|
multidrug efflux RND transporter permease subunit AcrB;
Pssm-ID: 185081 [Multi-domain] Cd Length: 1049 Bit Score: 38.73 E-value: 1.00e-02
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 354 IKMSMIALIGASV--FIVVFMMMYYGV----AGIFANIAMLVNVLVVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVII 427
Cdd:PRK15127 333 VKISIHEVVKTLVeaIILVFLVMYLFLqnfrATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVV 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488946888 428 NERIRellrdgvniRVSIEQGY------KNAMSAI------IDSNITSLVTSVALYAYGTGAV-KGFAVTLGIGIVVSMI 494
Cdd:PRK15127 413 VENVE---------RVMAEEGLppkeatRKSMGQIqgalvgIAMVLSAVFVPMAFFGGSTGAIyRQFSITIVSAMALSVL 483
|
170 180 190
....*....|....*....|....*....|....*
gi 488946888 495 TAILGTHGMFDYFMQRIEKNN---NTRFWFGYRRR 526
Cdd:PRK15127 484 VALILTPALCATMLKPIAKGDhgeGKKGFFGWFNR 518
|
|
| |
