NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489080177|ref|WP_002990114|]
View 

cystathionine beta-lyase [Streptococcus pyogenes]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK05270 super family cl47102
UDP-glucose--hexose-1-phosphate uridylyltransferase;
37-71 9.96e-11

UDP-glucose--hexose-1-phosphate uridylyltransferase;


The actual alignment was detected with superfamily member PRK05270:

Pssm-ID: 235382 [Multi-domain]  Cd Length: 493  Bit Score: 60.26  E-value: 9.96e-11
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 489080177  37 FITPPPSVINAYFAEIYQKqSPQAATDYYFNLSKA 71
Cdd:PRK05270  87 LLTPRPSEVNRRFWEKYQK-SPEAATDYFYQLSKA 120
 
Name Accession Description Interval E-value
PRK05270 PRK05270
UDP-glucose--hexose-1-phosphate uridylyltransferase;
37-71 9.96e-11

UDP-glucose--hexose-1-phosphate uridylyltransferase;


Pssm-ID: 235382 [Multi-domain]  Cd Length: 493  Bit Score: 60.26  E-value: 9.96e-11
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 489080177  37 FITPPPSVINAYFAEIYQKqSPQAATDYYFNLSKA 71
Cdd:PRK05270  87 LLTPRPSEVNRRFWEKYQK-SPEAATDYFYQLSKA 120
GalP_UDP_transf pfam01087
Galactose-1-phosphate uridyl transferase, N-terminal domain; SCOP reports fold duplication ...
 37-71 8.95e-05

Galactose-1-phosphate uridyl transferase, N-terminal domain; SCOP reports fold duplication with C-terminal domain. Both involved in Zn and Fe binding.


Pssm-ID: 426039 [Multi-domain]  Cd Length: 182  Bit Score: 41.51  E-value: 8.95e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 489080177   37 FITPPPSVINAYFAEIYQkqSPQAATDYYFNLSKA 71
Cdd:pfam01087  54 YLCPGPSRANGDFNPDYK--SPFVFTNDFYALSKD 86
 
Name Accession Description Interval E-value
PRK05270 PRK05270
UDP-glucose--hexose-1-phosphate uridylyltransferase;
37-71 9.96e-11

UDP-glucose--hexose-1-phosphate uridylyltransferase;


Pssm-ID: 235382 [Multi-domain]  Cd Length: 493  Bit Score: 60.26  E-value: 9.96e-11
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 489080177  37 FITPPPSVINAYFAEIYQKqSPQAATDYYFNLSKA 71
Cdd:PRK05270  87 LLTPRPSEVNRRFWEKYQK-SPEAATDYFYQLSKA 120
GalP_UDP_transf pfam01087
Galactose-1-phosphate uridyl transferase, N-terminal domain; SCOP reports fold duplication ...
 37-71 8.95e-05

Galactose-1-phosphate uridyl transferase, N-terminal domain; SCOP reports fold duplication with C-terminal domain. Both involved in Zn and Fe binding.


Pssm-ID: 426039 [Multi-domain]  Cd Length: 182  Bit Score: 41.51  E-value: 8.95e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 489080177   37 FITPPPSVINAYFAEIYQkqSPQAATDYYFNLSKA 71
Cdd:pfam01087  54 YLCPGPSRANGDFNPDYK--SPFVFTNDFYALSKD 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH