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Conserved domains on  [gi|489189591|ref|WP_003098970|]
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MULTISPECIES: hypothetical protein [Proteobacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ERG3 super family cl27195
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid ...
 2-56 1.61e-05

Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism];


The actual alignment was detected with superfamily member COG3000:

Pssm-ID: 442238  Cd Length: 158  Bit Score: 39.92  E-value: 1.61e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 489189591   2 AVGAWLGFLVVHLAFQHSNLGYR-VGPLGLLIGVAEAHRWHHKREHEDAQVNYGDF 56
Cdd:COG3000   72 AVLLYLALNLLYQFFNHSNIRLPlDGPLEYVFVTPSHHRVHHSRNPEYLDKNYGGI 127
 
Name Accession Description Interval E-value
ERG3 COG3000
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid ...
 2-56 1.61e-05

Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism];


Pssm-ID: 442238  Cd Length: 158  Bit Score: 39.92  E-value: 1.61e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 489189591   2 AVGAWLGFLVVHLAFQHSNLGYR-VGPLGLLIGVAEAHRWHHKREHEDAQVNYGDF 56
Cdd:COG3000   72 AVLLYLALNLLYQFFNHSNIRLPlDGPLEYVFVTPSHHRVHHSRNPEYLDKNYGGI 127
 
Name Accession Description Interval E-value
ERG3 COG3000
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid ...
 2-56 1.61e-05

Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism];


Pssm-ID: 442238  Cd Length: 158  Bit Score: 39.92  E-value: 1.61e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 489189591   2 AVGAWLGFLVVHLAFQHSNLGYR-VGPLGLLIGVAEAHRWHHKREHEDAQVNYGDF 56
Cdd:COG3000   72 AVLLYLALNLLYQFFNHSNIRLPlDGPLEYVFVTPSHHRVHHSRNPEYLDKNYGGI 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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