NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489304811|ref|WP_003212254|]
View 

MULTISPECIES: YkuJ family protein [Bacillus]

Protein Classification

YkuJ family protein( domain architecture ID 10008729)

YkuJ family protein is a DUF1797 domain-containing protein; similar to Bacillus subtilis protein YkuJ

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YkuJ COG4703
Uncharacterized conserved protein YkuJ, DUF1797 family [Function unknown];
2-79 6.39e-33

Uncharacterized conserved protein YkuJ, DUF1797 family [Function unknown];


:

Pssm-ID: 443738  Cd Length: 73  Bit Score: 108.08  E-value: 6.39e-33
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489304811  2 SQLMGIITRLQSLQETAeaANEPAQRYFEVNGEKICSVKYFEKNQTFELTVFQQGDkpnTFPFDNIDMISIEIFELLQ 79
Cdd:COG4703   1 SQLLAIIQRLEAMQEDD--DNEVQVRRFEKNGEEVCSVKYDPKTETFELEEYRKGQ---TYQFDDIDLVAIEIYELLQ 73
 
Name Accession Description Interval E-value
YkuJ COG4703
Uncharacterized conserved protein YkuJ, DUF1797 family [Function unknown];
2-79 6.39e-33

Uncharacterized conserved protein YkuJ, DUF1797 family [Function unknown];


Pssm-ID: 443738  Cd Length: 73  Bit Score: 108.08  E-value: 6.39e-33
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489304811  2 SQLMGIITRLQSLQETAeaANEPAQRYFEVNGEKICSVKYFEKNQTFELTVFQQGDkpnTFPFDNIDMISIEIFELLQ 79
Cdd:COG4703   1 SQLLAIIQRLEAMQEDD--DNEVQVRRFEKNGEEVCSVKYDPKTETFELEEYRKGQ---TYQFDDIDLVAIEIYELLQ 73
DUF1797 pfam08796
Protein of unknown function (DUF1797); This is a domain of unknown function. It forms a ...
 7-78 1.72e-28

Protein of unknown function (DUF1797); This is a domain of unknown function. It forms a central anti-parallel beta sheet with flanking alpha helical regions.


Pssm-ID: 430222  Cd Length: 67  Bit Score: 96.90  E-value: 1.72e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489304811   7 IITRLQSLQEtaEAANEPAQRYFEVNGEKICSVKYFEKNQTFELTVFQQGDkpnTFPFDNIDMISIEIFELL 78
Cdd:pfam08796  1 IINRLEAMQE--AESGEVQQRNFEKEGEEVCTVSYDPKTETFELEEYRDKQ---TYQFDDIDLVAIEIYDLL 67
 
Name Accession Description Interval E-value
YkuJ COG4703
Uncharacterized conserved protein YkuJ, DUF1797 family [Function unknown];
2-79 6.39e-33

Uncharacterized conserved protein YkuJ, DUF1797 family [Function unknown];


Pssm-ID: 443738  Cd Length: 73  Bit Score: 108.08  E-value: 6.39e-33
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489304811  2 SQLMGIITRLQSLQETAeaANEPAQRYFEVNGEKICSVKYFEKNQTFELTVFQQGDkpnTFPFDNIDMISIEIFELLQ 79
Cdd:COG4703   1 SQLLAIIQRLEAMQEDD--DNEVQVRRFEKNGEEVCSVKYDPKTETFELEEYRKGQ---TYQFDDIDLVAIEIYELLQ 73
DUF1797 pfam08796
Protein of unknown function (DUF1797); This is a domain of unknown function. It forms a ...
 7-78 1.72e-28

Protein of unknown function (DUF1797); This is a domain of unknown function. It forms a central anti-parallel beta sheet with flanking alpha helical regions.


Pssm-ID: 430222  Cd Length: 67  Bit Score: 96.90  E-value: 1.72e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489304811   7 IITRLQSLQEtaEAANEPAQRYFEVNGEKICSVKYFEKNQTFELTVFQQGDkpnTFPFDNIDMISIEIFELL 78
Cdd:pfam08796  1 IINRLEAMQE--AESGEVQQRNFEKEGEEVCTVSYDPKTETFELEEYRDKQ---TYQFDDIDLVAIEIYDLL 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH