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Conserved domains on  [gi|489318106|ref|WP_003225461|]
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MULTISPECIES: ferredoxin [Bacillus]

Protein Classification

ferredoxin( domain architecture ID 10596226)

ferredoxin is an iron-sulfur protein transferring electrons in a wide variety of metabolic reactions

Gene Ontology:  GO:0005506|GO:0009055
PubMed:  1846297|15973049

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fer4_13 pfam13370
4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing ...
 7-69 3.49e-08

4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteriztic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.


:

Pssm-ID: 433153 [Multi-domain]  Cd Length: 58  Bit Score: 45.38  E-value: 3.49e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489318106   7 VDKDTCIACGACGAAAPDIYDYDDEGIAFVTLDENKGvvevpEVLEEDMIDAFEGCPTDSIKV 69
Cdd:pfam13370  1 VDEDTCIDCGTCRELAPEVFKYDDDGGASFVHDQPVN-----EEEEDLAEEALDSCPVEAIGT 58
 
Name Accession Description Interval E-value
Fer4_13 pfam13370
4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing ...
 7-69 3.49e-08

4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteriztic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.


Pssm-ID: 433153 [Multi-domain]  Cd Length: 58  Bit Score: 45.38  E-value: 3.49e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489318106   7 VDKDTCIACGACGAAAPDIYDYDDEGIAFVTLDENKGvvevpEVLEEDMIDAFEGCPTDSIKV 69
Cdd:pfam13370  1 VDEDTCIDCGTCRELAPEVFKYDDDGGASFVHDQPVN-----EEEEDLAEEALDSCPVEAIGT 58
Fer COG1141
Ferredoxin [Energy production and conversion];
6-71 3.74e-05

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 37.55  E-value: 3.74e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489318106  6 IVDKDTCIACGACGAAAPDIYDYDDEGIAFVTLDEnkgvveVPEVLEEDMIDAFEGCPTDSIKVAD 71
Cdd:COG1141   4 TVDRDTCIGCGLCVALAPEVFELDDDGKAVVLDEE------VPEELEEDVREAADACPVGAITVEE 63
 
Name Accession Description Interval E-value
Fer4_13 pfam13370
4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing ...
 7-69 3.49e-08

4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteriztic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.


Pssm-ID: 433153 [Multi-domain]  Cd Length: 58  Bit Score: 45.38  E-value: 3.49e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489318106   7 VDKDTCIACGACGAAAPDIYDYDDEGIAFVTLDENKGvvevpEVLEEDMIDAFEGCPTDSIKV 69
Cdd:pfam13370  1 VDEDTCIDCGTCRELAPEVFKYDDDGGASFVHDQPVN-----EEEEDLAEEALDSCPVEAIGT 58
Fer COG1141
Ferredoxin [Energy production and conversion];
6-71 3.74e-05

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 37.55  E-value: 3.74e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489318106  6 IVDKDTCIACGACGAAAPDIYDYDDEGIAFVTLDEnkgvveVPEVLEEDMIDAFEGCPTDSIKVAD 71
Cdd:COG1141   4 TVDRDTCIGCGLCVALAPEVFELDDDGKAVVLDEE------VPEELEEDVREAADACPVGAITVEE 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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