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Conserved domains on  [gi|489329778|ref|WP_003237051|]
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MULTISPECIES: cytochrome c-550 [Bacillus]

Protein Classification

cytochrome c( domain architecture ID 10601782)

cytochrome c is an electron carrier protein that contains one or more heme groups

CATH:  1.10.760.10
Gene Ontology:  GO:0009055|GO:0020037
PubMed:  12594933|18568041|10395550
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
47-116 3.38e-12

Cytochrome C oxidase, cbb3-type, subunit III;


:

Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 57.03  E-value: 3.38e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489329778   47 DANASPEDIYKANCIACHGenyEGVSGPSLkgVGDKKDVAEIKTKIEKGGNGMPS--GLVPADKLDDMAEWV 116
Cdd:pfam13442   1 AAAAAGEALYAANCASCHG---TGGAGPSL--AGRALPPEALVDIIRNGKGAMPAfgGDLSDEELEALAAYL 67
 
Name Accession Description Interval E-value
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
47-116 3.38e-12

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 57.03  E-value: 3.38e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489329778   47 DANASPEDIYKANCIACHGenyEGVSGPSLkgVGDKKDVAEIKTKIEKGGNGMPS--GLVPADKLDDMAEWV 116
Cdd:pfam13442   1 AAAAAGEALYAANCASCHG---TGGAGPSL--AGRALPPEALVDIIRNGKGAMPAfgGDLSDEELEALAAYL 67
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
43-116 3.35e-10

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 54.57  E-value: 3.35e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489329778  43 AEKDDANASPEDIYKANCIACHGENYEGVSG--PSLKGV-GDKKDVAEIKTKIEKG--GNGMPS--GLVPADKLDDMAEW 115
Cdd:COG2010   83 AADAEALARGKALYEQNCAACHGADGKGGLGaaPNLTDDaLYGGDPEALVETILNGrpGGAMPAfgGQLSDEEIAALAAY 162


                 .
gi 489329778 116 V 116
Cdd:COG2010  163 L 163
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 38-115 6.28e-06

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 43.65  E-value: 6.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489329778  38 GESKSAEKDDANASPE--DIYKANCIACHGENYEGVSGPSLKGVGDKKDVAEIKTKIEKGG---NGMPSGlvpADKLDDM 112
Cdd:PRK14486 202 LELPNPFATDVAAIAKgkALYDANCAACHGDEAQGQEGVALNDIDDGDLPDAAYFGMIKGGsdaKGMPGF---GGDLSDD 278


                 ...
gi 489329778 113 AEW 115
Cdd:PRK14486 279 DIW 281
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
 57-92 2.22e-04

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 37.18  E-value: 2.22e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 489329778   57 KANCIACHGENYEGVS----GPSLKGVGDK-KDVAEIKTKI 92
Cdd:TIGR04485   2 KGNCLACHQIPGSEVFpgniGPSLTGYGARyPDEAYLRAKI 42
 
Name Accession Description Interval E-value
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
47-116 3.38e-12

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 57.03  E-value: 3.38e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489329778   47 DANASPEDIYKANCIACHGenyEGVSGPSLkgVGDKKDVAEIKTKIEKGGNGMPS--GLVPADKLDDMAEWV 116
Cdd:pfam13442   1 AAAAAGEALYAANCASCHG---TGGAGPSL--AGRALPPEALVDIIRNGKGAMPAfgGDLSDEELEALAAYL 67
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
43-116 3.35e-10

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 54.57  E-value: 3.35e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489329778  43 AEKDDANASPEDIYKANCIACHGENYEGVSG--PSLKGV-GDKKDVAEIKTKIEKG--GNGMPS--GLVPADKLDDMAEW 115
Cdd:COG2010   83 AADAEALARGKALYEQNCAACHGADGKGGLGaaPNLTDDaLYGGDPEALVETILNGrpGGAMPAfgGQLSDEEIAALAAY 162


                 .
gi 489329778 116 V 116
Cdd:COG2010  163 L 163
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
45-120 1.32e-06

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 42.97  E-value: 1.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489329778  45 KDDANASPEDIYKANCIACHGENYEGVsGPSLKGV-----GDKKDVAEIKTKIEKGGNG------MP--SGLVPADkLDD 111
Cdd:COG4654    1 AADAAAGKALAKKSGCLACHAVDKKLV-GPSYKDVakkykGKADAVAKLAKKIKKGGSGvwgdvpMPphPQLSDAE-AKA 78


                 ....*....
gi 489329778 112 MAEWVSKIK 120
Cdd:COG4654   79 LVKWILSLK 87
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 55-120 1.77e-06

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 42.91  E-value: 1.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489329778   55 IYKANCIACHGENYEGVS--GPSLKGVGDKKDVAEIKTKIEKGGNG-----------------MPSGLVPADkLDDMAEW 115
Cdd:pfam00034   6 LFAANCAACHGVNGEGAGagGPDLAGLAARYPGDALGAIRENKHAIggggvdraggppgtgmpAFDGLTDEE-IADLVAY 84


                  ....*
gi 489329778  116 VSKIK 120
Cdd:pfam00034  85 LLSLS 89
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 38-115 6.28e-06

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 43.65  E-value: 6.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489329778  38 GESKSAEKDDANASPE--DIYKANCIACHGENYEGVSGPSLKGVGDKKDVAEIKTKIEKGG---NGMPSGlvpADKLDDM 112
Cdd:PRK14486 202 LELPNPFATDVAAIAKgkALYDANCAACHGDEAQGQEGVALNDIDDGDLPDAAYFGMIKGGsdaKGMPGF---GGDLSDD 278


                 ...
gi 489329778 113 AEW 115
Cdd:PRK14486 279 DIW 281
CytC5 COG3245
Cytochrome c5 [Energy production and conversion];
43-100 2.86e-05

Cytochrome c5 [Energy production and conversion];


Pssm-ID: 442476 [Multi-domain]  Cd Length: 108  Bit Score: 40.05  E-value: 2.86e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489329778  43 AEKDDANASPEDIYKANCIACHGenyEGVSG-PslkGVGDKKDVAE-IKTKIE-------KGGNGMP 100
Cdd:COG3245   26 AAAAAAARSGEAVYNATCAACHA---TGVAGaP---KLGDKAAWAPrIAKGMDtllkhaiNGFNAMP 86
CytM COG5676
Cytochrome cM [Energy production and conversion];
53-105 5.93e-05

Cytochrome cM [Energy production and conversion];


Pssm-ID: 444390 [Multi-domain]  Cd Length: 124  Bit Score: 39.54  E-value: 5.93e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489329778  53 EDIYKANCIACHGENYEGVSGPSLKGVGDKK-DVAEIKTKIekggngmpSGLVP 105
Cdd:COG5676   57 HAIFQINCAGCHGLQADGNVGPSLQGVSKRKsDVSLIEQVI--------SGKTP 102
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
 57-92 2.22e-04

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 37.18  E-value: 2.22e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 489329778   57 KANCIACHGENYEGVS----GPSLKGVGDK-KDVAEIKTKI 92
Cdd:TIGR04485   2 KGNCLACHQIPGSEVFpgniGPSLTGYGARyPDEAYLRAKI 42
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
56-120 2.85e-04

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 37.40  E-value: 2.85e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489329778  56 YKANCIACHGENYEGVSG---PSLKGVGD---KKDVAEIKTKIEKGG--NGMPSGLVPADkLDDMAEWVSKIK 120
Cdd:COG2863   21 YAAACAACHGADGEGNPGggaPRLAGQHAeylVAQLKAFRSGARKNGvmPAIAKGLSDED-IKALAAYIASLK 92
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 53-79 3.81e-04

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 38.30  E-value: 3.81e-04
                         10        20
                 ....*....|....*....|....*..
gi 489329778  53 EDIYKANCIACHGENYEGVSGPSLKGV 79
Cdd:COG3258  121 KALYAERCASCHGADGEGQGRADGQYG 147
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 39-116 2.44e-03

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 36.03  E-value: 2.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489329778   39 ESKSAEKDDANASP-EDIYKANCIACHGENYEGVSGPSLKGVGDK-----KDVAEIKTKIEKGGNG-MPS--GLVPADKL 109
Cdd:TIGR00782 192 LSSGKPKDEALAAKgQELFADNCTTCHGEDGKGLQELGAPNLTDDvwlygGDLKTITTTITNGRGGvMPAwgPRLSEAQI 271


                  ....*..
gi 489329778  110 DDMAEWV 116
Cdd:TIGR00782 272 KALAAYV 278
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
47-83 4.33e-03

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 34.09  E-value: 4.33e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 489329778  47 DAnASPEDIYKANCIACH--GENYEGVSGPSLKGVGDKK 83
Cdd:COG3474    2 DA-AAGEKLFNRKCAACHsvDGGAGNRVGPNLNGVVGRK 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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