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Conserved domains on  [gi|489487033|ref|WP_003391999|]
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MULTISPECIES: 50S ribosomal protein L7ae-like protein [Brevibacillus]

Protein Classification

ribosomal L7Ae/L30e/S12e/Gadd45 family protein( domain architecture ID 10014290)

ribosomal L7Ae/L30e/S12e/Gadd45 family protein may be characterized as a K-turn binding protein; K-turns are RNA motifs comprised of a bulge flanked by canonical and noncanonical helices.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13602 PRK13602
50S ribosomal protein L7ae-like protein;
1-82 1.33e-37

50S ribosomal protein L7ae-like protein;


:

Pssm-ID: 184174 [Multi-domain]  Cd Length: 82  Bit Score: 120.66  E-value: 1.33e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489487033  1 MSYEKVERAKELTIGVKQTMKAVEHNQVEAVYIAVDADRRLTQKVELLCKEKGVPVIRVDSMRRLGKACGIEVGAATAAI 80
Cdd:PRK13602  1 MSYEKVSQAKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKLGKACGIEVGAAAVAI 80


                ..
gi 489487033 81 KK 82
Cdd:PRK13602 81 IK 82
 
Name Accession Description Interval E-value
PRK13602 PRK13602
50S ribosomal protein L7ae-like protein;
1-82 1.33e-37

50S ribosomal protein L7ae-like protein;


Pssm-ID: 184174 [Multi-domain]  Cd Length: 82  Bit Score: 120.66  E-value: 1.33e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489487033  1 MSYEKVERAKELTIGVKQTMKAVEHNQVEAVYIAVDADRRLTQKVELLCKEKGVPVIRVDSMRRLGKACGIEVGAATAAI 80
Cdd:PRK13602  1 MSYEKVSQAKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKLGKACGIEVGAAAVAI 80


                ..
gi 489487033 81 KK 82
Cdd:PRK13602 81 IK 82
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 1-84 7.17e-21

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 78.66  E-value: 7.17e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489487033  1 MSYEKVERAKELTIGVKQTMKAVEHNQVEAVYIAVDADRRLTQKVELLCKEKGVPVIRVDSMRRLGKACGiEVGAATAAI 80
Cdd:COG1358   5 NLLGLARRAGKLVSGEEQVLKAIRKGKAKLVIIAEDASENTKKKLLDLCEEYGVPVVEVGTKEELGKAIG-KVGRAVVAI 83


                ....
gi 489487033 81 KKSG 84
Cdd:COG1358  84 TDEG 87
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 5-84 2.71e-12

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 56.83  E-value: 2.71e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489487033   5 KVERAKELTIGVKQTMKAVEHNQVEAVYIAVDAD-RRLTQKVELLCKEKGVPVIRVDSMRRLGKACGIEVGAATAAIKKS 83
Cdd:pfam01248  9 KALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDpEEKVKLIPALCKEKNVPYVKVPSKKELGEACGKKRPVSALAIKDE 88


                 .
gi 489487033  84 G 84
Cdd:pfam01248 89 G 89
SNU13 cd21104
U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, ...
 10-71 7.97e-04

U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, also known as NHP2-like protein 1 or U4/U6.U5 tri-snRNP 15.5 kDa protein, is a component of the spliceosome B complex, involved in pre-mRNA splicing. It binds to the 5'-stem-loop of U4 snRNA.


Pssm-ID: 411046  Cd Length: 122  Bit Score: 35.38  E-value: 7.97e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489487033  10 KELTIGVKQTMKAVEHNQVEAVYIAVDADR-RLTQKVELLCKEKGVPVIRVDSMRRLGKACGI 71
Cdd:cd21104   27 KQLKKGANEATKTLNRGIAEFIVMAADAEPlEILLHLPLLCEDKNVPYVFVPSKQALGRACGV 89
 
Name Accession Description Interval E-value
PRK13602 PRK13602
50S ribosomal protein L7ae-like protein;
1-82 1.33e-37

50S ribosomal protein L7ae-like protein;


Pssm-ID: 184174 [Multi-domain]  Cd Length: 82  Bit Score: 120.66  E-value: 1.33e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489487033  1 MSYEKVERAKELTIGVKQTMKAVEHNQVEAVYIAVDADRRLTQKVELLCKEKGVPVIRVDSMRRLGKACGIEVGAATAAI 80
Cdd:PRK13602  1 MSYEKVSQAKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKLGKACGIEVGAAAVAI 80


                ..
gi 489487033 81 KK 82
Cdd:PRK13602 81 IK 82
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 1-84 7.17e-21

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 78.66  E-value: 7.17e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489487033  1 MSYEKVERAKELTIGVKQTMKAVEHNQVEAVYIAVDADRRLTQKVELLCKEKGVPVIRVDSMRRLGKACGiEVGAATAAI 80
Cdd:COG1358   5 NLLGLARRAGKLVSGEEQVLKAIRKGKAKLVIIAEDASENTKKKLLDLCEEYGVPVVEVGTKEELGKAIG-KVGRAVVAI 83


                ....
gi 489487033 81 KKSG 84
Cdd:COG1358  84 TDEG 87
PRK13601 PRK13601
putative L7Ae-like ribosomal protein; Provisional
 11-79 1.16e-16

putative L7Ae-like ribosomal protein; Provisional


Pssm-ID: 184173  Cd Length: 82  Bit Score: 67.70  E-value: 1.16e-16
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489487033 11 ELTIGVKQTMKAVEHNQVEAVYIAVDADRRLTQKVELLCKEKGVPVIRVDSMRRLGKACGIEVGAATAA 79
Cdd:PRK13601  8 KRVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELGVMCGIDVGAAAAA 76
PRK06683 PRK06683
hypothetical protein; Provisional
 1-80 1.59e-16

hypothetical protein; Provisional


Pssm-ID: 136002  Cd Length: 82  Bit Score: 67.41  E-value: 1.59e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489487033  1 MSYEKVERAKELTIGVKQTMKAVEHNQVEAVYIAVDADRRLTQKVELLCKEKGVPVIRVDSMRRLGKACGIEVGAATAAI 80
Cdd:PRK06683  1 MSYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGKVAGIQVGASAIGI 80
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 5-84 2.71e-12

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 56.83  E-value: 2.71e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489487033   5 KVERAKELTIGVKQTMKAVEHNQVEAVYIAVDAD-RRLTQKVELLCKEKGVPVIRVDSMRRLGKACGIEVGAATAAIKKS 83
Cdd:pfam01248  9 KALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDpEEKVKLIPALCKEKNVPYVKVPSKKELGEACGKKRPVSALAIKDE 88


                 .
gi 489487033  84 G 84
Cdd:pfam01248 89 G 89
PRK13600 PRK13600
putative ribosomal protein L7Ae-like; Provisional
 1-82 1.76e-09

putative ribosomal protein L7Ae-like; Provisional


Pssm-ID: 184172  Cd Length: 84  Bit Score: 49.46  E-value: 1.76e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489487033  1 MSYEKVER--AKELTIGVKQTMKAVEHNQVEAVYIAVDADRRLTQKVELLCKEKGVPVIRVDSMRRLGKACGIEVGAATA 78
Cdd:PRK13600  1 MSKEKVARfnKQHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIV 80


                ....
gi 489487033 79 AIKK 82
Cdd:PRK13600 81 ALIK 84
RPL30E COG1911
Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 11-84 1.63e-07

Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441515 [Multi-domain]  Cd Length: 97  Bit Score: 44.43  E-value: 1.63e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489487033 11 ELTIGVKQTMKAVEHNQVEAVYIAVDADRRLTQKVELLCKEKGVPVIRVDSMRR-LGKACGIEVGAATAAIKKSG 84
Cdd:COG1911  16 KVVLGSKQTIKAIKLGKAKLVILAANCPPEIREDIEYYAKLSNVPVYVYPGTSVeLGALCGKPFRVSALAIIDPG 90
SNU13 cd21104
U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, ...
 10-71 7.97e-04

U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, also known as NHP2-like protein 1 or U4/U6.U5 tri-snRNP 15.5 kDa protein, is a component of the spliceosome B complex, involved in pre-mRNA splicing. It binds to the 5'-stem-loop of U4 snRNA.


Pssm-ID: 411046  Cd Length: 122  Bit Score: 35.38  E-value: 7.97e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489487033  10 KELTIGVKQTMKAVEHNQVEAVYIAVDADR-RLTQKVELLCKEKGVPVIRVDSMRRLGKACGI 71
Cdd:cd21104   27 KQLKKGANEATKTLNRGIAEFIVMAADAEPlEILLHLPLLCEDKNVPYVFVPSKQALGRACGV 89
PRK01018 PRK01018
50S ribosomal protein L30e; Reviewed
 13-70 4.18e-03

50S ribosomal protein L30e; Reviewed


Pssm-ID: 179205 [Multi-domain]  Cd Length: 99  Bit Score: 33.01  E-value: 4.18e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 489487033 13 TIGVKQTMKAVEHNQVEAVYIAVDADRRLTQKVELLCKEKGVPVIRVD-SMRRLGKACG 70
Cdd:PRK01018 18 ILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEgSSVELGTLCG 76
PRK07714 PRK07714
YlxQ family RNA-binding protein;
8-72 5.01e-03

YlxQ family RNA-binding protein;


Pssm-ID: 236077  Cd Length: 100  Bit Score: 32.83  E-value: 5.01e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489487033   8 RAKELTIGVKQTMKAVEHNQVEAVYIAVDADRRLTQKVELLCKEKGVPVIRVDSMRRLGKACGIE 72
Cdd:PRK07714  15 RARKVISGEELVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQLGHAIGKD 79
PRK07283 PRK07283
YlxQ-related RNA-binding protein;
7-70 5.77e-03

YlxQ-related RNA-binding protein;


Pssm-ID: 180920  Cd Length: 98  Bit Score: 32.87  E-value: 5.77e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489487033  7 ERAKELTIGVKQTMKAVEHNQVEAVYIAVDADRRLTQKVELLCKEKGVPVIRVDSMRRLGKACG 70
Cdd:PRK07283 14 QRAGRIISGEELVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLELSAAVG 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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