|
Name |
Accession |
Description |
Interval |
E-value |
| BCSC_C |
pfam05420 |
Cellulose synthase operon protein C C-terminus (BCSC_C); This family contains the C-terminal ... |
926-1348 |
1.28e-138 |
|
Cellulose synthase operon protein C C-terminus (BCSC_C); This family contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown.
Pssm-ID: 461647 Cd Length: 336 Bit Score: 426.64 E-value: 1.28e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 926 SKLTELRTPLtWSSSPFGDSRFDFTVTPVSLNAGT--ASGDAWRRYGANPLanavsnmvstatseqaaiasmteaertay 1003
Cdd:pfam05420 1 SRLTEFTAPL-EASFPAGDGRLFVRVTPVSLDAGTlaPDGSALARFGTGAL----------------------------- 50
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 1004 fasnpgaealsglgtlnaadfnpttnsgmenlaklgsydagqvasylssssrkpnvdQTSGSTDSQKANGVELALALSGD 1083
Cdd:pfam05420 51 ---------------------------------------------------------SAVRAAGSQTASGVGLALGWEGD 73
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 1084 DYRVDIGSTPLGQDLNTVVGGVKWSPKLTNYlSLILTGERRSLTDSLLSYVGLKDAYSGKTWGQVTKNGGTLQLSYDDGD 1163
Cdd:pfam05420 74 NWKADIGTTPLGFDVSNVVGGVSWSGDLGDF-GYTLTAERRPVTDSLLSYAGARDPVTGKTWGGVTANGGGLGLSYDDGG 152
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 1164 AGFYVGGGGYSYLGQNVASNTSINANAGVYLRPYHDEYRQLQAGLSMSYMDYSKNLSYFTYGQGGYFSPQNYVSVSLPVS 1243
Cdd:pfam05420 153 AGVYASGGYHSLTGENVADNTRVEAMAGGYYRVINDPDRRLTVGLNLNYMHYDKNLSYFTYGQGGYFSPQRYVSISLPVE 232
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 1244 LTEKYDNWTMKLGGSVGYQSYSQDKSAYFPTNSEWQQTLETAVsNGFAKEAYYSATSKSGIGYTLRAGADYKVNKQMTLG 1323
Cdd:pfam05420 233 YAGRYGNWSYQLGGSVGYQSYREDAAPYFPTDPDLQAALASAV-AGTASNASYAGSSGTGFGYNLRAAGEYRLSPHWFVG 311
|
410 420
....*....|....*....|....*
gi 490304025 1324 GQIGYDTFGDYNESTAGLYIRYMLG 1348
Cdd:pfam05420 312 GALSIDNSGDYAPSRGLLYLRYLFD 336
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
53-1345 |
2.11e-101 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 350.54 E-value: 2.11e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 53 EKSH-DELAMESLQKVLSVDANNTQALYLMALWSQQGGDMQAAAQWRARLAKAAPDSPGLQDLDNAKKMSQvPQG--QLS 129
Cdd:PRK11447 39 EATHrEDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST-PEGrqALQ 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 130 LARQQARGGNIPGALATWRSMFNGNTPPAELAAEYYLTMASDKSLYPQAISELRQYVAQHPQENAPRVALGKALtWREET 209
Cdd:PRK11447 118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLL-FSSGR 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 210 RREGIALLEPMASGNKEADSGLRQALLWLGPQAGDEQYYDTW---MQRHPQDSEV----QNYFRERR-----SGQARGQG 277
Cdd:PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALqkyLQVFSDGDSVaaarSQLAEQQKqladpAFRARAQG 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 278 YANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLggDASATRRQQAADAL----FYGQ 353
Cdd:PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL--DPHSSNRDKWESLLkvnrYWLL 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 354 LAQAQQAYKQGNISQALALSAPlAQQSGAQGASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQn 433
Cdd:PRK11447 355 IQQGDAALKANNLAQAERLYQQ-ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ- 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 434 kSAE-AQAMLQTLPQSLRQKLQpRVVAGMPGDALRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLRLDLARLLQKSGN 512
Cdd:PRK11447 433 -SPEkALAFIASLSASQRRSID-DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 513 GSEASSLMSA-AYRPGASNSALYAAALFASENGAWQQAQTLLARVPGGSQTSDMRDLRQRVNYNLQLVTAenylaqgnti 591
Cdd:PRK11447 511 RSQADALMRRlAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA---------- 580
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 592 aasNTLRAmastppkapadagklarllaesgdlttavslvrnnissgvsgnAGDYADQIAVLNQagltgeaqnlisnpql 671
Cdd:PRK11447 581 ---NRLRD-------------------------------------------SGKEAEAEALLRQ---------------- 598
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 672 qasstptQLASIRngYVINEADRLREQGNYAAAYDKLIRAMQSDPQNTdlmfamarlyqsgkmnkeagvvydylmtrdtp 751
Cdd:PRK11447 599 -------QPPSTR--IDLTLADWAQQRGDYAAARAAYQRVLTREPGNA-------------------------------- 637
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 752 nqDARAGAIDVALSAGNNDRAEQLAGGLRQDNSPDrLLLLARVAEAQ---GHHQQAMTYLRSargkllgMQSTNSSETPT 828
Cdd:PRK11447 638 --DARLGLIEVDIAQGDLAAARAQLAKLPATANDS-LNTQRRVALAWaalGDTAAAQRTFNR-------LIPQAKSQPPS 707
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 829 VGGVLAADNPFIGVSQTSAPTRTASAYGQYMpwqvAQSAAAPgsTLPgiqrTDLPVDTAQTRMLRQVDTMMESL------ 902
Cdd:PRK11447 708 MESALVLRDAARFEAQTGQPQQALETYKDAM----VASGITP--TRP----QDNDTFTRLTRNDEKDDWLKRGVrsdaad 777
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 903 ---QEKTGSWLQggMDVRGRDGESGTSKLTELRTPLTwSSSPFGDSRFDFTVTPVSLNAGTASGDAWRRYganplanavs 979
Cdd:PRK11447 778 lyrQQDLNVTLE--HDYWGSSGTGGYSDLKAHTTMLQ-VDAPLSDGRAFFRTDRVNMDAGSFSTNADGKY---------- 844
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 980 nmvstatseqaaiasmTEAERTAYFASNPGAEalsglgtlnaadfnpttnsgmenlaklgsydagqvasylssssrkpnv 1059
Cdd:PRK11447 845 ----------------DDNWGTCTLQDCSGNR------------------------------------------------ 860
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 1060 dqtsgstdSQKANGVELALALSGDDYRVDIGSTPLGQDLNTVVGGVKWSPKLtNYLSLILTGERRSLTDSLLSYVGLKDA 1139
Cdd:PRK11447 861 --------SQSDSGASVAVGWRNDRWSWDIGTTPMGFNVVDVVGGISYSGDI-GPLGYTLNAHRRPISSSLLAFGGQKDP 931
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 1140 YS--GKTWGQVTKNGGTLQLSYDDGDA-GFYVGGGGYSYLGQNVASNTSINANAGVYLRPYHDEYRQLQAGLSMSYMDYS 1216
Cdd:PRK11447 932 PSntGTTWGGVRANGVGLSLSYDKGEAnGVWASLSGDQLTGKNVADNWRVRWMTGYYYKVINENNRRVTVGLNNMIWHYD 1011
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 1217 KNLSYFTYGQGGYFSPQNYVSVSLPVSLTEKYDNWTMKLGGSVGYQSYSQDKSAYFPTNSewqqtLETAVSNGFAKEAYY 1296
Cdd:PRK11447 1012 KDLSGYSLGQGGYYSPQEYLSFAVPVMWRQRTENWSWELGGSVSWSHSRTKTMPRYPLMN-----LIPTDYQEDAADQSN 1086
|
1290 1300 1310 1320
....*....|....*....|....*....|....*....|....*....
gi 490304025 1297 SATSKSGIGYTLRAGADYKVNKQMTLGGQIGYDTFGDYNESTAGLYIRY 1345
Cdd:PRK11447 1087 DGSSSQGFGYTARALVERRLTSNWFVGTGVDIQQAKDYTPSHALLYVRY 1135
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
276-555 |
1.50e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 113.67 E-value: 1.50e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 276 QGYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASATRRQQAADALFYGQLA 355
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 356 QAQQAYKQgnisqalalsaplAQQSGAQGASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKS 435
Cdd:COG2956 94 RAEELLEK-------------LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 436 AEAQAMLQTLpqslrQKLQPRVVagmpgDALRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLRLDLARLLQKSGNGSE 515
Cdd:COG2956 161 DEAIEALEKA-----LKLDPDCA-----RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 490304025 516 ASSLMSAAYRPGASNSALYAAALFASENGAWQQAQTLLAR 555
Cdd:COG2956 231 ALELLRKALELDPSDDLLLALADLLERKEGLEAALALLER 270
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
226-493 |
8.97e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 90.94 E-value: 8.97e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 226 EADSGLRQALLWLGP---QAGD----EQYYDTWMQRHPQDSEVQnyfrerrsgQARGQGYanLNSGNTAAAKQQFEEVLQ 298
Cdd:COG2956 36 ELDPETVEAHLALGNlyrRRGEydraIRIHQKLLERDPDRAEAL---------LELAQDY--LKAGLLDRAEELLEKLLE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 299 TNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASATRRQQAADALFYGQLAQAQQAYKqgnisQALALSaplaq 378
Cdd:COG2956 105 LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE-----KALKLD----- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 379 qsgAQGASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQtlpqslrqklqpRVV 458
Cdd:COG2956 175 ---PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLR------------KAL 239
|
250 260 270
....*....|....*....|....*....|....*.
gi 490304025 459 AGMPG-DALRRQAQAQVSSGNPAGAIATLREGVARY 493
Cdd:COG2956 240 ELDPSdDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
281-811 |
3.20e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 90.91 E-value: 3.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 281 LNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLG-------------------------- 334
Cdd:TIGR02917 33 LQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGypknqvlpllarayllqgkfqqvlde 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 335 -GDASATRRQQAADALFY--------GQLAQAQQAYKQGNISQALALSA--PLAQQSGAQG------------------- 384
Cdd:TIGR02917 113 lPGKTLLDDEGAAELLALrglaylglGQLELAQKSYEQALAIDPRSLYAklGLAQLALAENrfdearalidevltadpgn 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 385 ASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQTLPQSLRQKLQprvvagmpgd 464
Cdd:TIGR02917 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPL---------- 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 465 ALRRQAQAQVSSGNPAGAIAT----------------------------------LREGVARYPDDPWLRLDLARLLQKS 510
Cdd:TIGR02917 263 AHYLKALVDFQKKNYEDARETlqdalksapeylpalllagaseyqlgnleqayqyLNQILKYAPNSHQARRLLASIQLRL 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 511 GNGSEASSLMSAAYRPGASNSALYAAALFAS-ENGAWQQAQTLLARVpgGSQTSDMRDLRQRVnynlqlvtAENYLAQGN 589
Cdd:TIGR02917 343 GRVDEAIATLSPALGLDPDDPAALSLLGEAYlALGDFEKAAEYLAKA--TELDPENAAARTQL--------GISKLSQGD 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 590 TIAASNTLRAMASTPPKaPADAGklaRLLAES----GDLTTAVSLVRN------------NISSGVSGNAGDYADQIAVL 653
Cdd:TIGR02917 413 PSEAIADLETAAQLDPE-LGRAD---LLLILSylrsGQFDKALAAAKKlekkqpdnaslhNLLGAIYLGKGDLAKAREAF 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 654 NQAgltgeaqnLISNPQLQASstptqlasirngyVINEADRLREQGNYAAAYDKLIRAMQSDPQNTDLMFAMARLYQSGK 733
Cdd:TIGR02917 489 EKA--------LSIEPDFFPA-------------AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 734 MNKEAGVVYDYLMTRDTPNQDARAGAIDVALSAGNNDRAEQLAGGLrQDNSPDR---LLLLARVAEAQGHHQQAMTYLRS 810
Cdd:TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA-ADAAPDSpeaWLMLGRAQLAAGDLNKAVSSFKK 626
|
.
gi 490304025 811 A 811
Cdd:TIGR02917 627 L 627
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
304-609 |
7.02e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 89.28 E-value: 7.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 304 ADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASATRRQQAADALFYGQLAQAQQAYKQGnisQALALSAPLAQQSGAQ 383
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLA---LAAGEAAAAAAALLLL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 384 GASAKLFrADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQtlpQSLRqkLQPRVVagmpg 463
Cdd:COG3914 78 AALLELA-ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALR---RALA--LNPDFA----- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 464 DALRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLRLDLARLLQKSGNGSEASSLMSAAYRPGASNSALYAAALFA-SE 542
Cdd:COG3914 147 EAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAlRQ 226
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490304025 543 NGAWQQAQTLLARVPGGSQTSDMRDLrQRVNYnLQLVTAENYLAQGNTIAASNTLRAMASTPPKAPA 609
Cdd:COG3914 227 ACDWEVYDRFEELLAALARGPSELSP-FALLY-LPDDDPAELLALARAWAQLVAAAAAPELPPPPNP 291
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
60-811 |
7.03e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 86.68 E-value: 7.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 60 AMESLQKVLSVDANNTQALYLMA-LWSQQGGDMQAAAQWRARLAKAAPDSP-----------GLQDLDNAKKM------- 120
Cdd:TIGR02917 75 AEKELRKALSLGYPKNQVLPLLArAYLLQGKFQQVLDELPGKTLLDDEGAAellalrglaylGLGQLELAQKSyeqalai 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 121 -SQVPQGQLSLARQQARGGNIPGALATWRSMFNGNTPPAE-LAAEYYLTMASDKslYPQAISELRQYVAQHPQENAPRVA 198
Cdd:TIGR02917 155 dPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDaLLLKGDLLLSLGN--IELALAAYRKAIALRPNNIAVLLA 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 199 LGKALTWR---EETRREGIALLE-----PMASGNK-----------EADSGLrQALLWLGPQ-------AGDEQYY-DTW 251
Cdd:TIGR02917 233 LATILIEAgefEEAEKHADALLKkapnsPLAHYLKalvdfqkknyeDARETL-QDALKSAPEylpalllAGASEYQlGNL 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 252 MQRHPQDSEVQNYFRERRsgQARGQGYA-NLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRA 330
Cdd:TIGR02917 312 EQAYQYLNQILKYAPNSH--QARRLLASiQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKA 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 331 ADLG-GDASATRRQ---------------------QAADALFYGQLAQAQQAYKQGNISQALALSAPLAQQSGAQgASAK 388
Cdd:TIGR02917 390 TELDpENAAARTQLgisklsqgdpseaiadletaaQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN-ASLH 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 389 LFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEA----QAMLQTLPQSLRQKLQ---------- 454
Cdd:TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAiqrfEKVLTIDPKNLRAILAlaglylrtgn 548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 455 PRVVAGMPGDALRRQAQAQ----------VSSGNPAGAIATLREGVARYPDDPWLRLDLARLLQKSGNGSEA-SSLMSAA 523
Cdd:TIGR02917 549 EEEAVAWLEKAAELNPQEIepalalaqyyLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAvSSFKKLL 628
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 524 YRPGASNSALYAAALFASENGAWQQAQTLLARvpGGSQTSDMRDLrqrvnynlQLVTAENYLAQGNTIAASNTLRAMAST 603
Cdd:TIGR02917 629 ALQPDSALALLLLADAYAVMKNYAKAITSLKR--ALELKPDNTEA--------QIGLAQLLLAAKRTESAKKIAKSLQKQ 698
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 604 PPKAPADAGKLARLLAESGDLTTAVSLVRNNISsgvsgnagdyadqiavlnqagLTGEAQNLIsnpqlqasstptQLASI 683
Cdd:TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALK---------------------RAPSSQNAI------------KLHRA 745
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 684 rngyvineadrLREQGNYAAAYDKLIRAMQSDPQNTDLMFAMARLYQSGKMNKEAGVVYDYLMTRdTPNQdarAGAI-DV 762
Cdd:TIGR02917 746 -----------LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK-APDN---AVVLnNL 810
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 490304025 763 ALSAGNNDRAEQLAGGLR----QDNSPDRLLLLARVAEAQGHHQQAMTYLRSA 811
Cdd:TIGR02917 811 AWLYLELKDPRALEYAERalklAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
348-632 |
5.58e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 79.77 E-value: 5.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 348 ALFYGQLAQAQQAYKQGNISQALALSAPLAQQSGAQgASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYY 427
Cdd:COG2956 6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPET-VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 428 VLREQNKSAEAQAMLQTLpqslrQKLQPRVVagmpgDALRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLRLDLARLL 507
Cdd:COG2956 85 DYLKAGLLDRAEELLEKL-----LELDPDDA-----EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 508 QKSGNGSEASSLMSAA--YRPGASNsALYAAALFASENGAWQQAQTLLARVpggsqtsdmrdLRQRVNYNLQLVT-AENY 584
Cdd:COG2956 155 LEQGDYDEAIEALEKAlkLDPDCAR-ALLLLAELYLEQGDYEEAIAALERA-----------LEQDPDYLPALPRlAELY 222
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 490304025 585 LAQGNTIAASNTLRAMASTPPKAPADAgKLARLLAESGDLTTAVSLVR 632
Cdd:COG2956 223 EKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLE 269
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
58-623 |
1.82e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 82.05 E-value: 1.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 58 ELAMESLQKVLSVDANNTQALYLMALWSQQGGDMQAAAQWRARLAKAAPDSPglqdldNAKKMsqvpqgqlsLARQQARG 137
Cdd:TIGR02917 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSH------QARRL---------LASIQLRL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 138 GNIPGALATWrSMFNGNTPPAELAaeyyLTMASDKSL----YPQAISELRQYVAQHPqENA---PRVALGKALTWREetr 210
Cdd:TIGR02917 343 GRVDEAIATL-SPALGLDPDDPAA----LSLLGEAYLalgdFEKAAEYLAKATELDP-ENAaarTQLGISKLSQGDP--- 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 211 REGIALLEPMAsgnkEADSGLRQALLWLGPQAGDEQYYD-------TWMQRHPQDSEVQN-----YFRERRSGQARGQ-- 276
Cdd:TIGR02917 414 SEAIADLETAA----QLDPELGRADLLLILSYLRSGQFDkalaaakKLEKKQPDNASLHNllgaiYLGKGDLAKAREAfe 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 277 -----------GYANL-----NSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASAT 340
Cdd:TIGR02917 490 kalsiepdffpAAANLaridiQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 341 RRQQAADALFYGQLAQAQQaykqgnISQALALSAPLAQQsgaqgasAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAA 420
Cdd:TIGR02917 570 ALALAQYYLGKGQLKKALA------ILNEAADAAPDSPE-------AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 421 ARENLYYVLREQNKSAEAqamLQTLPQSLrqKLQPRVVagmpgDALRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLR 500
Cdd:TIGR02917 637 ALLLLADAYAVMKNYAKA---ITSLKRAL--ELKPDNT-----EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 501 LDLARLLQKSGNGSEASSLMSAAYR--PGASNSALYAAALFASENGAwQQAQTLLArvpggSQTSDMRDLrqRVNYNLql 578
Cdd:TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKraPSSQNAIKLHRALLASGNTA-EAVKTLEA-----WLKTHPNDA--VLRTAL-- 776
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 490304025 579 vtAENYLAQGNTIAASNTLRAMASTPPKAPADAGKLARLLAESGD 623
Cdd:TIGR02917 777 --AELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD 819
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
276-552 |
7.92e-15 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 77.26 E-value: 7.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 276 QGYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASATRrqqaadalfygQLA 355
Cdd:COG3071 22 EGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAV-----------LLT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 356 QAQQAYKQGNISQALALSAPLAQQSGAQGASAKLfRADVLRHNKDLPQAEQTLRSLLND---DPQNAAARENLYYV--LR 430
Cdd:COG3071 91 RAELLLDQGQAEQALATLEALRAGAPRHPQVLRL-LLQAYRQLGDWEELLELLPALRKHkalSAEEAQALERRAYLglLR 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 431 EQNKSAEA-QAMLQTLPQSLRQklQPRVVA---------GMPGDA-------LRRQAQ-------AQVSSGNPAGAIATL 486
Cdd:COG3071 170 QAARDAEAlKALWKALPRAERR--DPELAAayaralialGDHDEAerllreaLKRQWDprlvrlyGRLQGGDPAKQLKRA 247
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490304025 487 REGVARYPDDPWLRLDLARLLQKSGNGSEASSLMSAAYRPGASNSALYAAALFASENGAWQQAQTL 552
Cdd:COG3071 248 EKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAEH 313
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
214-473 |
1.09e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.80 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 214 IALLEPMASGNKEADSGLRQALLWLGPQAGDEQYYDTWMQRHPQDSEVQNYFRERRSGQARGQGYANL-NSGNTAAAKQQ 292
Cdd:COG3914 21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLqALGRYEEALAL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 293 FEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDasatrrqqaaDALFYGQLAQAqqAYKQGNISQALA- 371
Cdd:COG3914 101 YRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD----------FAEAYLNLGEA--LRRLGRLEEAIAa 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 372 LSAPLAQQSGAQGASAKLfrADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQTLPQSLRQ 451
Cdd:COG3914 169 LRRALELDPDNAEALNNL--GNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARG 246
|
250 260
....*....|....*....|....
gi 490304025 452 K--LQPRVVAGMPGDALRRQAQAQ 473
Cdd:COG3914 247 PseLSPFALLYLPDDDPAELLALA 270
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
58-520 |
7.23e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.58 E-value: 7.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 58 ELAMESLQKVLSVDANNTQALYLMALWSQQGGDMQAAAQWRARLAKAAPDSPGLQDL---------DNAKKMSQVPQG-- 126
Cdd:TIGR02917 414 SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLlgaiylgkgDLAKAREAFEKAls 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 127 --------QLSLARQQARGGNIPGALATWRSMF--NGNTPPAELA-AEYYLTMASDKslypQAISELRQYVAQHPQENAP 195
Cdd:TIGR02917 494 iepdffpaAANLARIDIQEGNPDDAIQRFEKVLtiDPKNLRAILAlAGLYLRTGNEE----EAVAWLEKAAELNPQEIEP 569
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 196 RVALGKALTWREETRReGIALLEPMASG---NKEADSGLRQALLWLGPQAGDEQYYDTWMQRHPQDSE-----------V 261
Cdd:TIGR02917 570 ALALAQYYLGKGQLKK-ALAILNEAADAapdSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALalllladayavM 648
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 262 QNYFRERRSGQA------------RGQGYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSR 329
Cdd:TIGR02917 649 KNYAKAITSLKRalelkpdnteaqIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK 728
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 330 AADLGGDASATRRQQAAdalfYGQLAQAQQAYKQgnisqalaLSAPLAQQsgAQGASAKLFRADVLRHNKDLPQAEQTLR 409
Cdd:TIGR02917 729 ALKRAPSSQNAIKLHRA----LLASGNTAEAVKT--------LEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYQ 794
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 410 SLLNDDPQNAAARENLYYVLREQnKSAEAQAMLQTlpqSLrqKLQPRVVAGMpgDALrrqAQAQVSSGNPAGAIATLREG 489
Cdd:TIGR02917 795 TVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAER---AL--KLAPNIPAIL--DTL---GWLLVEKGEADRALPLLRKA 863
|
490 500 510
....*....|....*....|....*....|.
gi 490304025 490 VARYPDDPWLRLDLARLLQKSGNGSEASSLM 520
Cdd:TIGR02917 864 VNIAPEAAAIRYHLALALLATGRKAEARKEL 894
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
382-525 |
2.42e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.60 E-value: 2.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 382 AQGASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQtlpqslrqklqpRVVAGM 461
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLH------------EALELD 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490304025 462 PGD--ALRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLRLDLARLLQKSGNGSEASSLMSAAYR 525
Cdd:COG4783 69 PDEpeARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
469-811 |
5.74e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.83 E-value: 5.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 469 QAQAQVSSGNPAGAIATLREGVARYPDDPWLRLDLARLLQKSGNGSEASSLMsaayrpgasnsalyaaalfasengawqq 548
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIH---------------------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 549 aQTLLARVPggsqtsdmrdlrQRVNYNLQLvtAENYLAQGNTIAASNTLRAMASTPPKAPADAGKLARLLAESGDlttav 628
Cdd:COG2956 66 -QKLLERDP------------DRAEALLEL--AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGD----- 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 629 slvrnnissgvsgnagdYADQIAVLNQAgltgeaqnlisnpqLQASSTPTQlasirngYVINEADRLREQGNYAAAYDKL 708
Cdd:COG2956 126 -----------------WEKAIEVLERL--------------LKLGPENAH-------AYCELAELYLEQGDYDEAIEAL 167
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 709 IRAMQSDPQNTDLMFAMARLYQSGKMNKEAGVVYDYLMTRDTPNQDARAGAIDVALSAGNNDRAEQ-LAGGLRQDNSPDR 787
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALElLRKALELDPSDDL 247
|
330 340
....*....|....*....|....
gi 490304025 788 LLLLARVAEAQGHHQQAMTYLRSA 811
Cdd:COG2956 248 LLALADLLERKEGLEAALALLERQ 271
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
267-418 |
1.29e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 1.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 267 ERRSGQARGQGYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDasatrrqqaa 346
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD---------- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490304025 347 DALFYGQLAQAqqAYKQGNISQALALSAPLAQQSGAQgASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQN 418
Cdd:COG4783 71 EPEARLNLGLA--LLKAGDYDEALALLEKALKLDPEH-PEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
277-507 |
1.42e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.10 E-value: 1.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 277 GYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASATRRQQAADALFYGQLAQ 356
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 357 AQQAYKqgnisQALALSaplaqqsgAQGASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSA 436
Cdd:COG0457 95 ALEDYD-----KALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490304025 437 EAQAMLQtlpQSLRQKLQPRVVAGMPGDALRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLRLDLARLL 507
Cdd:COG0457 162 EALELLE---KLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
288-422 |
2.81e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.63 E-value: 2.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 288 AAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDaSATRRQQAADALFY-GQLAQAQQAYKqgni 366
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD-NADALLDLAEALLAaGDTEEAEELLE---- 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 490304025 367 sQALALSaplaqqsgAQGASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAAR 422
Cdd:COG4235 76 -RALALD--------PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
353-496 |
6.30e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.66 E-value: 6.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 353 QLAQAQQAYKQGNISQALALSAPLAQQSGAQgASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQ 432
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490304025 433 NKSAEAQAMLQTLpqslrQKLQPRvvagmPGDALRRQAQAQVSSGNPAGAIATLREGVARYPDD 496
Cdd:COG4783 86 GDYDEALALLEKA-----LKLDPE-----HPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
60-363 |
2.80e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 59.74 E-value: 2.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 60 AMESLQKVLSVDANNTQALYLMALWSQQGGDMQAAAQWRARLAKAAPDSpglqdldnakkmsqvPQGQLSLARQQARGGN 139
Cdd:COG2956 27 AIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR---------------AEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 140 IPGALATWRSMFNGNtPPAELAAEYYLTMASDKSLYPQAISELRQYVAQHPQENAPRVALGKALTWREETrregiallep 219
Cdd:COG2956 92 LDRAEELLEKLLELD-PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY---------- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 220 masgnKEADSGLRQALlwlgpqagdeqyydtwmQRHPQDSEVQnyfrerrsgqaRGQGYANLNSGNTAAAKQQFEEVLQT 299
Cdd:COG2956 161 -----DEAIEALEKAL-----------------KLDPDCARAL-----------LLLAELYLEQGDYEEAIAALERALEQ 207
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490304025 300 NPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASAtRRQQAADALFYGQLAQAQQAYKQ 363
Cdd:COG2956 208 DPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLER 270
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
297-555 |
4.29e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.86 E-value: 4.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 297 LQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASATRRQQAADALFYGQLAQAQQAYKqgnisQALALSAPL 376
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYE-----QALELDPDD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 377 AQqsgaqgasAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQtlpQSLrqKLQPR 456
Cdd:COG0457 76 AE--------ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYE---RAL--ELDPD 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 457 VVagmpgDALRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLRLDLARLLQKSGNGSEASSLMSAAYRPGASNSALYAA 536
Cdd:COG0457 143 DA-----DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217
|
250
....*....|....*....
gi 490304025 537 ALFASENGAWQQAQTLLAR 555
Cdd:COG0457 218 ALAELLLLALALLLALRLA 236
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
60-364 |
1.95e-08 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 57.61 E-value: 1.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 60 AMESLQKVLSVDANNTQALYLMALWSQQGGDMQAAAQWRARLAKAAPDSpglqdlDNAKkmsqvpqgQLSLARQQARGGN 139
Cdd:COG3071 35 AEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEA------ELAV--------LLTRAELLLDQGQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 140 IPGALATWRSMFNG---NTPPAELAAEYYL-------------TMASDKSLYPQAISELRQYVAQHPQENAPRVALGKAL 203
Cdd:COG3071 101 AEQALATLEALRAGaprHPQVLRLLLQAYRqlgdweellellpALRKHKALSAEEAQALERRAYLGLLRQAARDAEALKA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 204 TWRE--ETRREGIALLEPMAsgnkeadsglrQALLWLGPQAGDEQYYDTWMQRHPQDSEVQnyfrerrsgqargqGYANL 281
Cdd:COG3071 181 LWKAlpRAERRDPELAAAYA-----------RALIALGDHDEAERLLREALKRQWDPRLVR--------------LYGRL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 282 NSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASAtrRQQAADALF-YGQLAQAQQA 360
Cdd:COG3071 236 QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEA--YAELARLLEqLGDPEEAAEH 313
|
....
gi 490304025 361 YKQG 364
Cdd:COG3071 314 YRKA 317
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
689-811 |
2.17e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.43 E-value: 2.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 689 INEADRLREQGNYAAAYDKLIRAMQSDPQNTDLMFAMARLYQSGKMNKEAGVVYDYLMTRDTPNQDARAGAIDVALSAGN 768
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 490304025 769 NDRAEQ-LAGGLRQD-NSPDRLLLLARVAEAQGHHQQAMTYLRSA 811
Cdd:COG4783 88 YDEALAlLEKALKLDpEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
245-439 |
3.31e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 56.17 E-value: 3.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 245 EQYYDTWMQRHPQDSEVQNYfrerrsgqargQGYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAAS 324
Cdd:COG0457 62 LADYEQALELDPDDAEALNN-----------LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAI 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 325 QYLSRAADLGGDASATRRQQAADALFYGQLAQAQQAYKQGNISQALALSAPLAQQSGAQGASAKLFRADVLRHNKDLPQA 404
Cdd:COG0457 131 EAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKK 210
|
170 180 190
....*....|....*....|....*....|....*
gi 490304025 405 EQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQ 439
Cdd:COG0457 211 LAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
314-816 |
2.97e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 55.25 E-value: 2.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 314 AQRSGDYQAASQYLSRAADLGGDASATRRQ-----QAADALFY-GQLAQAQQAYKQgnISQALALSAPLAQQSGAQGASA 387
Cdd:COG3899 715 ALARGAYAEALRYLERALELLPPDPEEEYRlalllELAEALYLaGRFEEAEALLER--ALAARALAALAALRHGNPPASA 792
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 388 KLFRADVLRHNKDLPQAEQTLRSLL------NDDPQNAAARENLYYVLREQNKSAEA--------QAMLQTLPQSLRQKL 453
Cdd:COG3899 793 RAYANLGLLLLGDYEEAYEFGELALalaerlGDRRLEARALFNLGFILHWLGPLREAlellrealEAGLETGDAALALLA 872
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 454 QPRVVAGMPGDALRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLRLDLARLLQKSGNGSEASSLMSAAYRPGASNSAL 533
Cdd:COG3899 873 LAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAA 952
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 534 YAAALFASENGAWQQAQTLLARVPGGSQ----TSDMRDLRQRVNYNLQLVTAENYLAQGNTIAASNTLRAMASTPPKAPA 609
Cdd:COG3899 953 ALAAALALAAAAAAAAAAALAAAAAAAAaaaaAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAA 1032
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 610 DAGKLARLLAESGDLTTAVSLVRNNISSGVSGNAGDYADQIAVLNQAGLTGEAQNLISNPQLQASSTPTQLASIRNGYVI 689
Cdd:COG3899 1033 AAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALA 1112
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 690 NEADRLREQGNYAAAYDKLIRAMQSDPQNTDLMFAmARLYQSGKMNKEAGVVYDYLMTRDTPNQDARAGAIDVALSAGNN 769
Cdd:COG3899 1113 ALALAAALAALALAAAARAAAALLLLAAALALALA-ALLLLAALLLALALLLLALAALALAAALAALAAALLAAAAAAAA 1191
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 490304025 770 DRAEQLAGGLRQDNSPDRLLLLARVAEAQGHHQQAMTYLRSARGKLL 816
Cdd:COG3899 1192 AAALLAALLALAARLAALLALALLALEAAALLLLLLLAALALAAALL 1238
|
|
| TPR_hemY_coli |
TIGR00540 |
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ... |
261-543 |
3.59e-07 |
|
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]
Pssm-ID: 273126 [Multi-domain] Cd Length: 367 Bit Score: 53.83 E-value: 3.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 261 VQNYF---RERRSGQARGQGYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDA 337
Cdd:TIGR00540 53 VRAWRsrrKQRRAQQATREGLIALFEGRYSQAEKKATKAAEHSENPLLAYLLAARAAQQMGDEERRDRYLAEAAELAPNS 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 338 SATR-----RQQAADALFYGQLAQAQQAYKQ-GNISQALALSAPLAQQSGAQGASAKLFRAdvLRHNKDLPQAE-QTLRS 410
Cdd:TIGR00540 133 ELAVlltraELLLDQRDYEAALAALDSLQAQaPRHTAVLRLALRAYQRSGNWDALLKLLPA--LRKAKALSPEEaARLEQ 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 411 LlnddpqnaAARENLyyvlreQNKSAEAQA----MLQTLPQSLRQKLQPRVVA--------------GMPGDALRRQAQ- 471
Cdd:TIGR00540 211 Q--------AYIGLL------DEAREEDADalktWWKQLPRAERQEPELAVAAaealiqlgdhdeaeKLIEEALKKEWDp 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 472 ------AQVSSGNPAGAIATLREGVARYPDDPWLRLDLARLLQKSGNGSEASSL--MSAAYRPGASnSALYAAALFASEN 543
Cdd:TIGR00540 277 ellrlyGRLQPGDPSPLIKRAEKWLKKHPDDALLLLALGRLCLRQQLWGKAQSYleASLSLAPTEE-AHLELAQLFEQLG 355
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
262-371 |
3.68e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.11 E-value: 3.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 262 QNYFRERRSGQARGQGYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASATR 341
Cdd:COG5010 46 GRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAY 125
|
90 100 110
....*....|....*....|....*....|
gi 490304025 342 RQQAADALFYGQLAQAQQAYKQGNISQALA 371
Cdd:COG5010 126 SNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
277-363 |
6.84e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.62 E-value: 6.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 277 GYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASATRRQQAADALFYGQLAQ 356
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
....*..
gi 490304025 357 AQQAYKQ 363
Cdd:COG4235 104 AIAAWQK 110
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
245-363 |
9.91e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.42 E-value: 9.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 245 EQYYDTWMQRHPQDSEVQNYFrerrsgqargqGYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAAS 324
Cdd:COG4783 24 EALLEKALELDPDNPEAFALL-----------GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEAL 92
|
90 100 110
....*....|....*....|....*....|....*....
gi 490304025 325 QYLSRAADLGGDASATRRQQAADALFYGQLAQAQQAYKQ 363
Cdd:COG4783 93 ALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
177-346 |
1.54e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.85 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 177 QAISELRQYVAQHPQENAPRVALGKALtwreetrregiallepMASGNkeadsgLRQALlwlgpqagdeQYYDTWMQRHP 256
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAY----------------LRLGR------YDEAL----------AAYEKALRLDP 48
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 257 QDSEVQnyfrerrsgqaRGQGYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGD 336
Cdd:COG4235 49 DNADAL-----------LDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
170
....*....|
gi 490304025 337 ASATRRQQAA 346
Cdd:COG4235 118 DAPARLLEAS 127
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
403-516 |
1.85e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.46 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 403 QAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQTLpqslrQKLQPRVVagmpgDALRRQAQAQVSSGNPAGA 482
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKA-----LRLDPDNA-----DALLDLAEALLAAGDTEEA 70
|
90 100 110
....*....|....*....|....*....|....
gi 490304025 483 IATLREGVARYPDDPWLRLDLARLLQKSGNGSEA 516
Cdd:COG4235 71 EELLERALALDPDNPEALYLLGLAAFQQGDYAEA 104
|
|
| LpoA |
COG3107 |
Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope ... |
320-512 |
2.38e-06 |
|
Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442341 [Multi-domain] Cd Length: 610 Bit Score: 51.89 E-value: 2.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 320 YQAASQYLSRAADLGGDASATRRQQAADALF-YGQLAQAQQAYKQgnisqalalsAPLAQQSGAQGASAKLFRADVLRHN 398
Cdd:COG3107 46 TASAEYYLQQAEQSQPEEKADYQLLAARALLqEGQLAQARALLAQ----------LPPQQLSPEQQLEYQLLLAELALAQ 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 399 KDLPQAEQTLRSLLNDD-PQNAAARenlYYVLReqnksAEAQAMLQTLPQSLRQ--KLQPRVVAGMPGDALRRQAQAQVS 475
Cdd:COG3107 116 GDPEAALALLSQLSLASlSPEQQAR---YYQLR-----AQAYEQQGDPLAAARAriALEPLLTDGQARQENQDQIWQLLS 187
|
170 180 190
....*....|....*....|....*....|....*..
gi 490304025 476 SGNPAgAIATLREGVARYPDDPWlrLDLARLLQKSGN 512
Cdd:COG3107 188 QLPPA-QLQSLAINADEPVLQGW--LELALIYRQNGG 221
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
447-573 |
2.40e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.08 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 447 QSLRQKLQPRvvagmPGDA--LRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLRLDLARLLQKSGNGSEASSLMSAAY 524
Cdd:COG4235 4 ARLRQALAAN-----PNDAegWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERAL 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 490304025 525 RPGASN-SALYAAALFASENGAWQQA----QTLLARVPGGsqtSDMRDLRQRVN 573
Cdd:COG4235 79 ALDPDNpEALYLLGLAAFQQGDYAEAiaawQKLLALLPAD---APARLLEASIA 129
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
281-378 |
2.80e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.09 E-value: 2.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 281 LNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYlSRAADLGGDASATRRQQAADALFYGQLAQAQQA 360
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
90
....*....|....*...
gi 490304025 361 YKqgnisQALALSAPLAQ 378
Cdd:COG3063 82 LE-----RALELDPSALR 94
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
703-811 |
3.36e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.69 E-value: 3.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 703 AAYDKLIRAMQSDPQNTDLMFAMARLYQSGKMNKEAGVVYDYLMTRDTPNQDARAGAIDVALSAGNNDRAEQLAG-GLRQ 781
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLErALAL 80
|
90 100 110
....*....|....*....|....*....|.
gi 490304025 782 D-NSPDRLLLLARVAEAQGHHQQAMTYLRSA 811
Cdd:COG4235 81 DpDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
50-218 |
3.65e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 50.11 E-value: 3.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 50 YWHEKSHDElAMESLQKVLSVDANNTQALYLMALWSQQGGDMQAAAQWRARLAKAAPDSP-----------GLQDLDNAK 118
Cdd:COG2956 86 YLKAGLLDR-AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAhaycelaelylEQGDYDEAI 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 119 KM--------SQVPQGQLSLARQQARGGNIPGALATWRSMFNGNtpPAELAAEYYLTMASDK-SLYPQAISELRQYVAQH 189
Cdd:COG2956 165 EAlekalkldPDCARALLLLAELYLEQGDYEEAIAALERALEQD--PDYLPALPRLAELYEKlGDPEEALELLRKALELD 242
|
170 180
....*....|....*....|....*....
gi 490304025 190 PQeNAPRVALGKALTwREETRREGIALLE 218
Cdd:COG2956 243 PS-DDLLLALADLLE-RKEGLEAALALLE 269
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
278-372 |
3.86e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.91 E-value: 3.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 278 YANLNSGNTAAAKQQFEEVLQTNPQD---ADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASatrrqQAADALFYgqL 354
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSP-----KAPDALLK--L 73
|
90
....*....|....*...
gi 490304025 355 AQAQqaYKQGNISQALAL 372
Cdd:COG1729 74 GLSY--LELGDYDKARAT 89
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
385-501 |
1.48e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.77 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 385 ASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQTLpqslrQKLQPRVVagmpgD 464
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA-----LALDPDNP-----E 86
|
90 100 110
....*....|....*....|....*....|....*..
gi 490304025 465 ALRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLRL 501
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
245-346 |
2.59e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.60 E-value: 2.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 245 EQYYDTWMQRHPQDSEVQN-YFRerrsgqargQGYANLNSGNTAAAKQQFEEVLQTNPQD---ADALAGMGYIAQRSGDY 320
Cdd:COG1729 13 IAAFKAFLKRYPNSPLAPDaLYW---------LGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDY 83
|
90 100
....*....|....*....|....*.
gi 490304025 321 QAASQYLSRAADLGGDASATRRQQAA 346
Cdd:COG1729 84 DKARATLEELIKKYPDSEAAKEARAR 109
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
394-495 |
2.94e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.01 E-value: 2.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 394 VLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQTLpqslrqKLQPRVVagmpgDALRRQAQAQ 473
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKAL------KLDPNNA-----EALLNLAELL 69
|
90 100
....*....|....*....|..
gi 490304025 474 VSSGNPAGAIATLREGVARYPD 495
Cdd:COG3063 70 LELGDYDEALAYLERALELDPS 91
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
393-497 |
4.65e-05 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 44.19 E-value: 4.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 393 DVLRhNKDLPQAEQTLRSLLNDDPQNAAARE------NLYYVLREQNKSAEA-QAMLQTLPQSlrqklqPRVvagmpGDA 465
Cdd:TIGR02795 9 LVLK-AGDYADAIQAFQAFLKKYPKSTYAPNahywlgEAYYAQGDYADAAKAfLAVVKKYPKS------PKA-----PDA 76
|
90 100 110
....*....|....*....|....*....|..
gi 490304025 466 LRRQAQAQVSSGNPAGAIATLREGVARYPDDP 497
Cdd:TIGR02795 77 LLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 108
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
395-506 |
5.40e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.83 E-value: 5.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 395 LRHNKDLPQAEQTLRSLLNDDPQNAAARENLYY---VLREQNKSAEAQAMLQTL----PQSLRQklqprvvagmpGDALR 467
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWlgeAYYALGDYDEAAEAFEKLlkryPDSPKA-----------PDALL 71
|
90 100 110
....*....|....*....|....*....|....*....
gi 490304025 468 RQAQAQVSSGNPAGAIATLREGVARYPDDPWLRLDLARL 506
Cdd:COG1729 72 KLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
476-538 |
6.02e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 42.19 E-value: 6.02e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490304025 476 SGNPAGAIATLREGVARYPDDPWLRLDLARLLQKSGNGSEASSLMsAAYRPGASNSALYAAAL 538
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALL-AALPAADPDDPRYAALL 62
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
337-494 |
6.65e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.57 E-value: 6.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 337 ASATRRQQAADALFYGQLAQAQQAYKQGNISQALALSAPLAQQSGAQGASAKLFRADVLRHNKDLPQAEQTLRSLLNDDP 416
Cdd:COG5010 6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 417 QNAAARENLYYVLREQNKSAEAQAMLQtlpqslrqklqpRVVAGMPGDALRRQ--AQAQVSSGNPAGAIATLREGVARYP 494
Cdd:COG5010 86 NNPELYYNLALLYSRSGDKDEAKEYYE------------KALALSPDNPNAYSnlAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
72-507 |
1.30e-04 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 46.50 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 72 ANNTQALYLMALWSQQGGDMQAAAQWRARLAKAAPDSPGLQDLDNAKKMSQVPQGQLSLARQQARGGNIPGALATWRSMF 151
Cdd:COG4995 14 LAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALLAAA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 152 NGNTPPAELAAEYYLTMASDKSLYPQAISELRQYVAQHPQENAPRVALGKALTWREETRREGIALLEPMASGNKEADSGL 231
Cdd:COG4995 94 LALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALALALA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 232 RQALLWLGPQAGDEQYYDTWMQRHPQDSEVQNYFRERRSGQARGQGYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMG 311
Cdd:COG4995 174 AAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAA 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 312 YIAQRSGDYQAASQYLSRAADLGGDASATRRQQAADALFYGQLAQAQQAYKQGNISQALALSAPLAQQSGAQGASAKLFR 391
Cdd:COG4995 254 AAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALL 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 392 ADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQTLPQSLRQKLQPRVVAGMPGDALRRQAQ 471
Cdd:COG4995 334 ALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLL 413
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 490304025 472 AQVSSGNPAGAIATLREGVAR------YPDDPWLRLDLARLL 507
Cdd:COG4995 414 AALALLLALAAYAAARLALLAlieyiiLPDRLYAFVQLYQLL 455
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
58-109 |
2.30e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 2.30e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 490304025 58 ELAMESLQKVLSVDANNTQALYLMALWSQQGGDM-QAAAQWRARLAKAAPDSP 109
Cdd:COG4235 68 EEAEELLERALALDPDNPEALYLLGLAAFQQGDYaEAIAAWQKLLALLPADAP 120
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
282-519 |
3.10e-04 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 44.61 E-value: 3.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 282 NSGNTAAAKQQFEEVLQTNPQD-----ADALAGMGYIAQRSGDYQAA------SQYLSRAADLGGDASATRRQQAADALF 350
Cdd:pfam17874 13 SKGDAERALELAEQALALLPEDdllarGLATFVLGEAYLCLGDLDAAlqamreAEALARRADSPHVTLWALLQQGEILRA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 351 YGQLAQAQQAYKQGnisQALALSAPLAQQSGAQGASAKlfRADVLRHNKDLPQAEQTLRS--LLNDDPQNAA---ARENL 425
Cdd:pfam17874 93 QGRLHQALETYQQA---LQLARDHGLQHLPLHGFLLVG--LADLLYEWNDLEEAEQHAQQgiQLGRQWEPDAavdAYVLL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 426 YYVLREQNKSAEAQAMLQTLPQSLRQKlqpRVVAGMPGDALRRQAQAQVSSGNPAGAI----ATLREGVARYPDDPWLRL 501
Cdd:pfam17874 168 ARIALAQGELEEALTLLRRAELLARQS---FFHVDWLANAERVRVRLWLARGDLRAAVrwlrAAEPPSDADNHFLERELR 244
|
250
....*....|....*...
gi 490304025 502 DLARLLQKSGNGSEASSL 519
Cdd:pfam17874 245 NLARVLLALGRFDDALSL 262
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
277-372 |
3.14e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.75 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 277 GYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGD----------ASATRRQQAA 346
Cdd:COG4785 114 GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperalwlylAERKLDPEKA 193
|
90 100
....*....|....*....|....*.
gi 490304025 347 DALFYGQLAQAQQAykQGNISQALAL 372
Cdd:COG4785 194 LALLLEDWATAYLL--QGDTEEAREL 217
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
287-443 |
3.40e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 42.64 E-value: 3.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 287 AAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASATRRQQAADALFY--GQLAQAQQAYKqg 364
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNklGDFEESLALLE-- 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490304025 365 nisQALALSAPLAQqsgaqgasAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQ 443
Cdd:COG5010 79 ---QALQLDPNNPE--------LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
313-524 |
3.66e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.37 E-value: 3.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 313 IAQRSGDYQAASQYLSRAADLGGDASAtRRQQAADALFYGQLAQAQQAYKQgnisQALALSAPLAQQSGAQGASAKLFRA 392
Cdd:COG4785 6 LALLLALALAAAAASKAAILLAALLFA-AVLALAIALADLALALAAAALAA----AALAAERIDRALALPDLAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 393 DVLRHNKDLPQAEQTLRSLLNDDPQNAAARENL--YYVLREQNKSAEA--QAMLQTLPQSlrqklqprvvagmpGDALRR 468
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRglAYLLLGDYDAALEdfDRALELDPDY--------------AYAYLN 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 490304025 469 QAQAQVSSGNPAGAIATLREGVARYPDDPwLRLDLARLLQKSGNGSEASSLMSAAY 524
Cdd:COG4785 147 RGIALYYLGRYELAIADLEKALELDPNDP-ERALWLYLAERKLDPEKALALLLEDW 201
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
692-797 |
3.76e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.92 E-value: 3.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 692 ADRLREQGNYAAAYDKLIRAMQSDPQNTDLMFAMARLYQSGKMNKEAGVVYDYLMTRDTPNQDARAGAIDVALSAGNNDR 771
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90 100
....*....|....*....|....*...
gi 490304025 772 AEQLAGGLRQDNSPD--RLLLLARVAEA 797
Cdd:COG4235 104 AIAAWQKLLALLPADapARLLEASIAEA 131
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
281-443 |
6.07e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.39 E-value: 6.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 281 LNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASatrrqqaADALFY-GQLAQAQQ 359
Cdd:cd24142 11 LDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGG-------YEKYLYlGQLSGGEE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 360 A---YKQG-------------NISQALALSAPLAQQ-SGAQGASAKLFRADVLrhnkDLPQAEQTLRSLLND----DPQN 418
Cdd:cd24142 84 AlqyYEKGieileeelqalqaASAEAEEEAEELKRKlSSALCALAEIYMTDLC----DEPDAEQRCEELITKalelDPTN 159
|
170 180
....*....|....*....|....*
gi 490304025 419 AAARENLYYVLREQNKSAEAQAMLQ 443
Cdd:cd24142 160 PEALQTLASLRISQQRPDEAKEALR 184
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
472-556 |
6.48e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.15 E-value: 6.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 472 AQVSSGNPAGAIATLREGVARYPDDPWLRLDLARLLQKSGNGSEASSLMSAAYRPGASNSALYAAALFASENGAWQQAQT 551
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....*
gi 490304025 552 LLARV 556
Cdd:COG3063 81 YLERA 85
|
|
| TPR1 |
COG4649 |
TPR-like repeat domain [Function unknown]; |
429-582 |
9.82e-04 |
|
TPR-like repeat domain [Function unknown];
Pssm-ID: 443687 [Multi-domain] Cd Length: 222 Bit Score: 42.16 E-value: 9.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 429 LREQNKSAEAQAMLQTLPQSLRQklQPRVVAGMpgdalrRQAQAQVSSGNPAGAIATLREGVARYPDDPWLRlDLARLLQ 508
Cdd:COG4649 69 LAEAGDAAEAAAALAALAADGPG--GYAALARL------RAAALLAQAGDTAAAVAAYDAVAADASAPPLLR-DLARLRA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 509 -----KSGNGSEASSLMSAAYRPGAS--NSALYAAALFASENGAWQQAQTLLARVPGGSQTSDmrDLRQRVNYNLQLVTA 581
Cdd:COG4649 140 alllvDTGDPADVRARLEPLAAPGNPwrHSARELLALAALKAGDTDAARRLFQAIAADAEAPA--GLRQRAQQLLALLGA 217
|
.
gi 490304025 582 E 582
Cdd:COG4649 218 D 218
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
281-456 |
1.08e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 42.87 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 281 LNSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAAdlggdasatrrQQAADALFYGqLAQAQQA 360
Cdd:PRK11788 191 LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE-----------EQDPEYLSEV-LPKLMEC 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 361 YKQ-GNISQALA-LSAPLAQQSgaqGASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNkSAEA 438
Cdd:PRK11788 259 YQAlGDEAEGLEfLRRALEEYP---GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE-EGRA 334
|
170
....*....|....*...
gi 490304025 439 QAMLQTLPQSLRQKLQPR 456
Cdd:PRK11788 335 KESLLLLRDLVGEQLKRK 352
|
|
| TPR_14 |
pfam13428 |
Tetratricopeptide repeat; |
464-506 |
1.21e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463874 [Multi-domain] Cd Length: 44 Bit Score: 37.79 E-value: 1.21e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 490304025 464 DALRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLRLDLARL 506
Cdd:pfam13428 2 EALLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
358-445 |
1.56e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 358 QQAYKQGNISQALALSAPLAQQ--SGAQGASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYY---VLREQ 432
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKlglSYLEL 80
|
90
....*....|...
gi 490304025 433 NKSAEAQAMLQTL 445
Cdd:COG1729 81 GDYDKARATLEEL 93
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
283-339 |
1.69e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 1.69e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 490304025 283 SGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASA 339
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPR 57
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
348-556 |
2.93e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 41.43 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 348 ALFYGQLAQAQQAYKQGNISQALALSAPLAQQSGAQGASAkLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAAREnlyy 427
Cdd:COG3071 14 AVLLAALLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAY-LLAARAAQALGDYERRDEYLAQALELAPEAELAVL---- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 428 VLR-----EQNKSAEAQAMLQTLPQslrqkLQPRVVAgmpgdALRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLRLD 502
Cdd:COG3071 89 LTRaelllDQGQAEQALATLEALRA-----GAPRHPQ-----VLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490304025 503 LAR-----LLQKSGNGSEASSL----MSAAYRpgASNSALYAAALFASENGAWQQAQTLLARV 556
Cdd:COG3071 159 LERraylgLLRQAARDAEALKAlwkaLPRAER--RDPELAAAYARALIALGDHDEAERLLREA 219
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
411-556 |
3.49e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.56 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 411 LLNDDPQNAAARENLYYVLREQNKSAEAQAMLQTLPQSLRQKLQPRVVAGMPGDALRRQAQAQVSSGNPAGAIATLREGV 490
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490304025 491 ARYPDDPWLRLDLARLLQKSGNGSEASSLMSAAYRPGASNS-ALYAAALFASENGAWQQAQTLLARV 556
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPnAYSNLAALLLSLGQDDEAKAALQRA 148
|
|
| OM_YfiO |
TIGR03302 |
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ... |
448-617 |
4.05e-03 |
|
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274513 [Multi-domain] Cd Length: 235 Bit Score: 40.61 E-value: 4.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 448 SLRQKLQPRVVAGMPGDALRRQAQAQVSSGNPAGAIATLREGVARYPDDPWLR---LDLARLLQKSGNGSEAsslMSAAY 524
Cdd:TIGR03302 18 SSKKKKEADPVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEqaqLDLAYAYYKSGDYAEA---IAAAD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 525 R-----PGASNS--ALYAAAL--FASENGAW------QQA----QTLLARVPGGSQTSD----MRDLRQR-VNYNLQlvT 580
Cdd:TIGR03302 95 RfirlhPNHPDAdyAYYLRGLsnYNQIDRVDrdqtaaREAfeafQELIRRYPNSEYAPDakkrMDYLRNRlAGKELY--V 172
|
170 180 190
....*....|....*....|....*....|....*..
gi 490304025 581 AENYLAQGNTIAASNTLRAMASTPPKAPADAGKLARL 617
Cdd:TIGR03302 173 ARFYLKRGAYVAAINRFQTVVENYPDTPATEEALARL 209
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
286-623 |
6.90e-03 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 41.05 E-value: 6.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 286 TAAAKQQFEEVLQTNPQ-DADALAGMGYiAQRSGDYQAASQYLSRAADLGgdasatRRQQAADALFygqlaQAQQAYKQG 364
Cdd:PRK09782 342 NEMLEERYAVSVATRNKaEALRLARLLY-QQEPANLTRLDQLTWQLMQNG------QSREAADLLL-----QRYPFQGDA 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 365 NISQALA--LSAPLAQQSGAQGASaklfRADVLRHNKDLPQAEQTLRSLLNDDPQNAAAREnlyyVLREQNKSAEAQAMl 442
Cdd:PRK09782 410 RLSQTLMarLASLLESHPYLATPA----KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR----LLGDMSPSYDAAAW- 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 443 QTLPQSLRQKLqprvvagmPGDALRRQAQAQVSSGNPAG--AIATLREGVARY----------PDDPW---LRLDLARLL 507
Cdd:PRK09782 481 NRLAKCYRDTL--------PGVALYAWLQAEQRQPDAWQhrAVAYQAYQVEDYatalaawqkiSLHDMsneDLLAAANTA 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490304025 508 QKSGNGSEASSLMSAAYRPGASNSALYAAalFASENGAWQQAQTLLArvpggsqtsdmrDLRQRVNYNLQ----LVTAEN 583
Cdd:PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWW--LHAQRYIPGQPELALN------------DLTRSLNIAPSanayVARATI 618
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 490304025 584 YLAQGNTIAASNTLRAMASTPPKAPADAGKLARLLAESGD 623
Cdd:PRK09782 619 YRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD 658
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
398-451 |
7.98e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.41 E-value: 7.98e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 490304025 398 NKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQTLPQSLRQ 451
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPD 54
|
|
| |
