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Conserved domains on  [gi|490651802|ref|WP_004516796|]
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MULTISPECIES: DNA-directed RNA polymerase subunit K [Haloarcula]

Protein Classification

DNA-directed RNA polymerase subunit K( domain architecture ID 10011620)

DNA-directed RNA polymerase subunit K is part of the DNA-dependent RNA polymerase that catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpoK PRK01099
DNA-directed RNA polymerase subunit K; Provisional
 6-55 2.57e-22

DNA-directed RNA polymerase subunit K; Provisional


:

Pssm-ID: 179220  Cd Length: 62  Bit Score: 79.97  E-value: 2.57e-22
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 490651802  6 SRYEKARKLGARALQLAHGAPVLIET-EHTQPILIAAEEYDAGVLPFTVNR 55
Cdd:PRK01099  8 TRFERARIIGARALQISMGAPVLIDIpESTDPLDIAEEEFKRGVLPITVKR 58
 
Name Accession Description Interval E-value
rpoK PRK01099
DNA-directed RNA polymerase subunit K; Provisional
 6-55 2.57e-22

DNA-directed RNA polymerase subunit K; Provisional


Pssm-ID: 179220  Cd Length: 62  Bit Score: 79.97  E-value: 2.57e-22
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 490651802  6 SRYEKARKLGARALQLAHGAPVLIET-EHTQPILIAAEEYDAGVLPFTVNR 55
Cdd:PRK01099  8 TRFERARIIGARALQISMGAPVLIDIpESTDPLDIAEEEFKRGVLPITVKR 58
RNA_pol_Rpb6 pfam01192
RNA polymerase Rpb6; Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and ...
 1-50 1.03e-09

RNA polymerase Rpb6; Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and III. This family also contains the bacterial equivalent to Rpb6, the omega subunit. Rpb6 and omega are structurally conserved and both function in polymerase assembly.


Pssm-ID: 426112  Cd Length: 52  Bit Score: 47.90  E-value: 1.03e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 490651802   1 MNAQESRYEKARKLGARALQLAHGAPVLIETEHTQPILIAAEEYDAGVLP 50
Cdd:pfam01192  3 LKKVDNRYELVVIAAKRARQLSMGAPPIKLDSFDKPVVIALREIAEGKIP 52
RpoZ COG1758
DNA-directed RNA polymerase, subunit K/omega [Transcription]; DNA-directed RNA polymerase, ...
 1-51 6.60e-06

DNA-directed RNA polymerase, subunit K/omega [Transcription]; DNA-directed RNA polymerase, subunit K/omega is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441364  Cd Length: 64  Bit Score: 38.62  E-value: 6.60e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 490651802  1 MNAQESRYEKARKLGARALQLAHGAPVLIETEHTQPILIAAEEYDAGVLPF 51
Cdd:COG1758  10 LEKVDNRYELVLLAAKRARQLAEGAEPLVEPDSDKPVVIALREIAEGKITI 60
 
Name Accession Description Interval E-value
rpoK PRK01099
DNA-directed RNA polymerase subunit K; Provisional
 6-55 2.57e-22

DNA-directed RNA polymerase subunit K; Provisional


Pssm-ID: 179220  Cd Length: 62  Bit Score: 79.97  E-value: 2.57e-22
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 490651802  6 SRYEKARKLGARALQLAHGAPVLIET-EHTQPILIAAEEYDAGVLPFTVNR 55
Cdd:PRK01099  8 TRFERARIIGARALQISMGAPVLIDIpESTDPLDIAEEEFKRGVLPITVKR 58
PLN00152 PLN00152
DNA-directed RNA polymerase; Provisional
 6-55 5.47e-13

DNA-directed RNA polymerase; Provisional


Pssm-ID: 177755  Cd Length: 130  Bit Score: 58.34  E-value: 5.47e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 490651802   6 SRYEKARKLGARALQLAHGAPVLIETE-HTQPILIAAEEYDAGVLPFTVNR 55
Cdd:PLN00152  61 TKYERARILGTRALQISMNAPVMVELEgETDPLEIAMKELRERKIPFTIRR 111
RNA_pol_Rpb6 pfam01192
RNA polymerase Rpb6; Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and ...
 1-50 1.03e-09

RNA polymerase Rpb6; Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and III. This family also contains the bacterial equivalent to Rpb6, the omega subunit. Rpb6 and omega are structurally conserved and both function in polymerase assembly.


Pssm-ID: 426112  Cd Length: 52  Bit Score: 47.90  E-value: 1.03e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 490651802   1 MNAQESRYEKARKLGARALQLAHGAPVLIETEHTQPILIAAEEYDAGVLP 50
Cdd:pfam01192  3 LKKVDNRYELVVIAAKRARQLSMGAPPIKLDSFDKPVVIALREIAEGKIP 52
RpoZ COG1758
DNA-directed RNA polymerase, subunit K/omega [Transcription]; DNA-directed RNA polymerase, ...
 1-51 6.60e-06

DNA-directed RNA polymerase, subunit K/omega [Transcription]; DNA-directed RNA polymerase, subunit K/omega is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441364  Cd Length: 64  Bit Score: 38.62  E-value: 6.60e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 490651802  1 MNAQESRYEKARKLGARALQLAHGAPVLIETEHTQPILIAAEEYDAGVLPF 51
Cdd:COG1758  10 LEKVDNRYELVLLAAKRARQLAEGAEPLVEPDSDKPVVIALREIAEGKITI 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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