NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|490725778|ref|WP_004588298|]
View 

MULTISPECIES: flagellar motor switch protein FliN [Pseudoalteromonas]

Protein Classification

flagellar motor switch protein FliN( domain architecture ID 11483490)

flagellar motor switch protein FliN is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
fliN PRK08983
flagellar motor switch protein FliN;
2-132 3.79e-66

flagellar motor switch protein FliN;


:

Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 196.12  E-value: 3.79e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778   2 SDDQDTMDEWAAALaeaeGGDESAEAHVAELDELSDAKHELSGDEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGS 81
Cdd:PRK08983   1 SSDEDTADDWAAAM----AEQALEEALAAELDELVDDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGS 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 490725778  82 VVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKKLR 132
Cdd:PRK08983  77 VVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK 127
 
Name Accession Description Interval E-value
fliN PRK08983
flagellar motor switch protein FliN;
2-132 3.79e-66

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 196.12  E-value: 3.79e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778   2 SDDQDTMDEWAAALaeaeGGDESAEAHVAELDELSDAKHELSGDEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGS 81
Cdd:PRK08983   1 SSDEDTADDWAAAM----AEQALEEALAAELDELVDDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGS 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 490725778  82 VVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKKLR 132
Cdd:PRK08983  77 VVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK 127
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 20-123 8.08e-34

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 115.87  E-value: 8.08e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778  20 GGDESAEAHVAELDELSDAkhELSGDEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNG 99
Cdd:COG1886   71 LLLLGSDEEPAEFEPLEDA--PEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNG 148

                         90       100
                 ....*....|....*....|....
gi 490725778 100 TLIAHGEVVVVNDKFGIRLTDVIS 123
Cdd:COG1886  149 RLIARGEVVVVDDRFGVRITEIVS 172
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 49-124 3.19e-31

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 106.14  E-value: 3.19e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490725778   49 KLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQ 124
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDS 76
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 58-123 3.68e-20

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 77.76  E-value: 3.68e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490725778   58 VTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVIS 123
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
 
Name Accession Description Interval E-value
fliN PRK08983
flagellar motor switch protein FliN;
2-132 3.79e-66

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 196.12  E-value: 3.79e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778   2 SDDQDTMDEWAAALaeaeGGDESAEAHVAELDELSDAKHELSGDEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGS 81
Cdd:PRK08983   1 SSDEDTADDWAAAM----AEQALEEALAAELDELVDDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGS 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 490725778  82 VVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKKLR 132
Cdd:PRK08983  77 VVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK 127
fliN PRK05698
flagellar motor switch protein FliN;
2-132 8.75e-50

flagellar motor switch protein FliN;


Pssm-ID: 168189 [Multi-domain]  Cd Length: 155  Bit Score: 155.73  E-value: 8.75e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778   2 SDDQDTMDEWAAALaeaeggDESAEAHVAELDEL--SDAKHELSGD-------------------EKRKLDTILDIPVTI 60
Cdd:PRK05698  10 PEDQALADEWAAAL------EEAGDAGQDDIDALlgADAGAEPSGPrapmeefgsspkpnepvslEGPNLDVILDIPVSI 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490725778  61 SMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKKLR 132
Cdd:PRK05698  84 SMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR 155
PRK08119 PRK08119
flagellar motor switch protein; Validated
 41-132 8.44e-39

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 133.83  E-value: 8.44e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778  41 ELSGDEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTD 120
Cdd:PRK08119 291 PLATTEPRNLDLILDVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDILVNGKLIAKGEVVVIDENFGVRITD 370

                         90
                 ....*....|..
gi 490725778 121 VISQVERIKKLR 132
Cdd:PRK08119 371 IVSQSERIKSLK 382
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 20-123 8.08e-34

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 115.87  E-value: 8.08e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778  20 GGDESAEAHVAELDELSDAkhELSGDEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNG 99
Cdd:COG1886   71 LLLLGSDEEPAEFEPLEDA--PEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNG 148

                         90       100
                 ....*....|....*....|....
gi 490725778 100 TLIAHGEVVVVNDKFGIRLTDVIS 123
Cdd:COG1886  149 RLIARGEVVVVDDRFGVRITEIVS 172
fliN PRK07963
flagellar motor switch protein FliN; Validated
 50-131 1.08e-32

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 111.80  E-value: 1.08e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778  50 LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIK 129
Cdd:PRK07963  54 IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMR 133


                 ..
gi 490725778 130 KL 131
Cdd:PRK07963 134 RL 135
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 49-124 3.19e-31

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 106.14  E-value: 3.19e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490725778   49 KLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQ 124
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDS 76
PRK08916 PRK08916
flagellar motor switch protein FliN;
50-122 2.91e-23

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 87.11  E-value: 2.91e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490725778  50 LDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVI 122
Cdd:PRK08916  39 LEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVLVEDRLGVTMTEII 111
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 58-123 3.68e-20

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 77.76  E-value: 3.68e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490725778   58 VTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVIS 123
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
PRK08432 PRK08432
flagellar motor switch protein FliY; Validated
 23-132 1.30e-17

flagellar motor switch protein FliY; Validated


Pssm-ID: 236264 [Multi-domain]  Cd Length: 283  Bit Score: 76.20  E-value: 1.30e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778  23 ESAEAHVAELDELSDAKHELSGDEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLI 102
Cdd:PRK08432 173 EGEETTDSASEEIKTHKASLSNEEIKNINMILDVKLPVRVRIGQKKMLLKDVLSMDIGSVVELNQLANDPLEILVDDKVI 252

                         90       100       110
                 ....*....|....*....|....*....|
gi 490725778 103 AHGEVVVVNDKFGIRLTDVISQVERIKKLR 132
Cdd:PRK08432 253 AKGEVVIVDGNFGIQITEIGTKKERLEQLK 282
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
 26-119 1.04e-14

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 68.59  E-value: 1.04e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778   26 EAHVAELDELSDAKHELSGDEK---RKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLI 102
Cdd:TIGR02551 200 DGITADNLDLSDLTDTESPDEPaapTPEVDLDQLPVTLEFELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLL 279

                          90
                  ....*....|....*..
gi 490725778  103 AHGEVVVVNDKFGIRLT 119
Cdd:TIGR02551 280 GRGELVDVGGRLGVRIL 296
PRK06782 PRK06782
flagellar motor switch protein; Reviewed
 53-122 1.71e-14

flagellar motor switch protein; Reviewed


Pssm-ID: 235861 [Multi-domain]  Cd Length: 528  Bit Score: 68.71  E-value: 1.71e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778  53 ILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVI 122
Cdd:PRK06782 459 LQDVPMNVKVVFGSTKKTIQDILSLQENEVVVLDEDIDEPIRIYVNGVLVAYGELVNVDGFFGVKVTKSL 528
PRK08433 PRK08433
flagellar motor switch protein FliN;
23-122 1.61e-12

flagellar motor switch protein FliN;


Pssm-ID: 181423 [Multi-domain]  Cd Length: 111  Bit Score: 59.38  E-value: 1.61e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778  23 ESAEAHVAELDELSDAKHELSGDekrkLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLI 102
Cdd:PRK08433   3 EKEKANKERELELSTYLEELICD----YENLLDIEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVELYINGRII 78

                         90       100
                 ....*....|....*....|
gi 490725778 103 AHGEVVVVNDKFGIRLTDVI 122
Cdd:PRK08433  79 GKGEVMVYEKNLAIRINEIL 98
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
36-126 2.67e-12

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 62.10  E-value: 2.67e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778  36 SDAKHELSGDEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFG 115
Cdd:COG1868  235 SDRKERDERWRERLREELEEAEVELSAELGETEITLRELLNLKVGDVIPLDKKVDDPLTVYVGGVPKFEGKPGVSNGRLA 314

                         90
                 ....*....|.
gi 490725778 116 IRLTDVISQVE 126
Cdd:COG1868  315 VKITEIIEEEE 325
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
26-119 1.69e-11

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 59.75  E-value: 1.69e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778  26 EAHVAELDELSDAKHELSGDEkrkLDTILD-IPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAH 104
Cdd:PRK06933 209 QSNKLELIGMHTESNDLNPEP---LLTDLNqLPVQVSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGH 285

                         90
                 ....*....|....*
gi 490725778 105 GEVVVVNDKFGIRLT 119
Cdd:PRK06933 286 GRLVEIQGRLGVRVE 300
fliM PRK06666
flagellar motor switch protein FliM; Validated
 53-130 2.16e-06

flagellar motor switch protein FliM; Validated


Pssm-ID: 235849 [Multi-domain]  Cd Length: 337  Bit Score: 45.22  E-value: 2.16e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490725778  53 ILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 130
Cdd:PRK06666 255 VQQAEVELVAELGEIKLTLSEILNLKVGDVIPLEKPADDPLIVYVDGKPKFLCQYGKSNGRKALQIEELIERELNEKN 332
PRK06788 PRK06788
flagellar motor switch protein; Validated
 31-130 3.00e-06

flagellar motor switch protein; Validated


Pssm-ID: 180693 [Multi-domain]  Cd Length: 119  Bit Score: 43.33  E-value: 3.00e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778  31 ELDELSDAKHELSGDEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVV 110
Cdd:PRK06788   9 SLMELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVGIGEAIVM 88

                         90       100
                 ....*....|....*....|
gi 490725778 111 NDKFGIrltdVISQVERIKK 130
Cdd:PRK06788  89 DEKFGI----IISEIEADKK 104
PRK06033 PRK06033
flagellar motor switch protein FliN;
52-119 7.35e-06

flagellar motor switch protein FliN;


Pssm-ID: 180359 [Multi-domain]  Cd Length: 83  Bit Score: 41.29  E-value: 7.35e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490725778  52 TILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLT 119
Cdd:PRK06033   3 TLDAVSVELMVVLGRSSMPIHQVLRMGRGAVIPLDATEADEVWILANNHPIARGEVLIDRNRIAVEVT 70
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
45-118 7.98e-06

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 43.70  E-value: 7.98e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490725778  45 DEKRKLDTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRL 118
Cdd:PRK08158 219 ETAETLPGLNQLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGVEI 292
PRK05933 PRK05933
type III secretion system protein; Validated
 60-121 2.75e-05

type III secretion system protein; Validated


Pssm-ID: 180315 [Multi-domain]  Cd Length: 372  Bit Score: 42.14  E-value: 2.75e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490725778  60 ISMEVGRSKINIRNLLQLNQGSVVELDRV-AGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDV 121
Cdd:PRK05933 310 LVAEVARYSLSVGEFLKLGPGSILQFDGVhPTLGVDIILNGAKVGRGEIIALGDVLGIRVLEV 372
PRK06789 PRK06789
flagellar motor switch protein; Validated
 55-121 3.96e-05

flagellar motor switch protein; Validated


Pssm-ID: 180694 [Multi-domain]  Cd Length: 74  Bit Score: 39.47  E-value: 3.96e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490725778  55 DIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDV 121
Cdd:PRK06789   6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKMYVEIVEL 72
PRK08035 PRK08035
YscQ/HrcQ family type III secretion apparatus protein;
31-119 1.46e-04

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181204 [Multi-domain]  Cd Length: 323  Bit Score: 39.80  E-value: 1.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490725778  31 ELDELSDAKHELSGDEKRKLDT----ILDIPVTISMEVGRSKINIRNLLQLNQGSVVELD-RVAGEpLDVLVNGTLIAHG 105
Cdd:PRK08035 222 ELNQDIDTLLASGSPMSKSPGTssveLEQLPQQVVMEIGRLSLPIGQLRQLAVGDVLPVGgCFYPE-VTIRLNGRIIGQG 300

                         90
                 ....*....|....
gi 490725778 106 EVVVVNDKFGIRLT 119
Cdd:PRK08035 301 ELLACDNELMVRIT 314
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH