autorepressor SdpR family transcription factor
List of domain hits
Name | Accession | Description | Interval | E-value | ||
repress_SdpR | NF033789 | autorepressor SdpR family transcription factor; Transcription factors in the family of the ... |
6-84 | 5.92e-47 | ||
autorepressor SdpR family transcription factor; Transcription factors in the family of the sporulation delaying system autorepressor SdpR (of Bacillus subtilis) resemble metalloregulatory transcriptional repressors such as ArsR, SmtB, CadX, ZiaR, etc., but may lack the key metal-binding residues. : Pssm-ID: 411369 [Multi-domain] Cd Length: 79 Bit Score: 144.09 E-value: 5.92e-47
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Name | Accession | Description | Interval | E-value | |||
repress_SdpR | NF033789 | autorepressor SdpR family transcription factor; Transcription factors in the family of the ... |
6-84 | 5.92e-47 | |||
autorepressor SdpR family transcription factor; Transcription factors in the family of the sporulation delaying system autorepressor SdpR (of Bacillus subtilis) resemble metalloregulatory transcriptional repressors such as ArsR, SmtB, CadX, ZiaR, etc., but may lack the key metal-binding residues. Pssm-ID: 411369 [Multi-domain] Cd Length: 79 Bit Score: 144.09 E-value: 5.92e-47
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ArsR | COG0640 | DNA-binding transcriptional regulator, ArsR family [Transcription]; |
3-85 | 1.02e-29 | |||
DNA-binding transcriptional regulator, ArsR family [Transcription]; Pssm-ID: 440405 [Multi-domain] Cd Length: 92 Bit Score: 101.12 E-value: 1.02e-29
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HTH_metalloreg | NF033788 | metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense ... |
3-78 | 1.22e-27 | |||
metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense toxic heavy metals such as arsenic or cadmium, and are released from DNA so that resistance factors will be expressed, include ArsR, SmtB, ZiaR, CadC, CadX, KmtR, etc. However, some members of this family, including the sporulation delaying system autorepressor SdpR and its family (see NF033789), may lack metal-binding cites and instead regulate other cellular processes. Pssm-ID: 411368 [Multi-domain] Cd Length: 76 Bit Score: 95.22 E-value: 1.22e-27
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HTH_ARSR | cd00090 | Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ... |
8-85 | 3.04e-20 | |||
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. Pssm-ID: 238042 [Multi-domain] Cd Length: 78 Bit Score: 76.57 E-value: 3.04e-20
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HTH_ARSR | smart00418 | helix_turn_helix, Arsenical Resistance Operon Repressor; |
18-78 | 8.92e-16 | |||
helix_turn_helix, Arsenical Resistance Operon Repressor; Pssm-ID: 197713 [Multi-domain] Cd Length: 66 Bit Score: 64.92 E-value: 8.92e-16
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HTH_20 | pfam12840 | Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in ... |
8-63 | 1.46e-13 | |||
Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins. Pssm-ID: 432824 [Multi-domain] Cd Length: 61 Bit Score: 59.09 E-value: 1.46e-13
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PRK10141 | PRK10141 | DNA-binding transcriptional repressor ArsR; Provisional |
8-83 | 1.63e-10 | |||
DNA-binding transcriptional repressor ArsR; Provisional Pssm-ID: 236654 Cd Length: 117 Bit Score: 52.90 E-value: 1.63e-10
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Name | Accession | Description | Interval | E-value | |||
repress_SdpR | NF033789 | autorepressor SdpR family transcription factor; Transcription factors in the family of the ... |
6-84 | 5.92e-47 | |||
autorepressor SdpR family transcription factor; Transcription factors in the family of the sporulation delaying system autorepressor SdpR (of Bacillus subtilis) resemble metalloregulatory transcriptional repressors such as ArsR, SmtB, CadX, ZiaR, etc., but may lack the key metal-binding residues. Pssm-ID: 411369 [Multi-domain] Cd Length: 79 Bit Score: 144.09 E-value: 5.92e-47
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ArsR | COG0640 | DNA-binding transcriptional regulator, ArsR family [Transcription]; |
3-85 | 1.02e-29 | |||
DNA-binding transcriptional regulator, ArsR family [Transcription]; Pssm-ID: 440405 [Multi-domain] Cd Length: 92 Bit Score: 101.12 E-value: 1.02e-29
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HTH_metalloreg | NF033788 | metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense ... |
3-78 | 1.22e-27 | |||
metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense toxic heavy metals such as arsenic or cadmium, and are released from DNA so that resistance factors will be expressed, include ArsR, SmtB, ZiaR, CadC, CadX, KmtR, etc. However, some members of this family, including the sporulation delaying system autorepressor SdpR and its family (see NF033789), may lack metal-binding cites and instead regulate other cellular processes. Pssm-ID: 411368 [Multi-domain] Cd Length: 76 Bit Score: 95.22 E-value: 1.22e-27
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HTH_ARSR | cd00090 | Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ... |
8-85 | 3.04e-20 | |||
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. Pssm-ID: 238042 [Multi-domain] Cd Length: 78 Bit Score: 76.57 E-value: 3.04e-20
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HTH_ARSR | smart00418 | helix_turn_helix, Arsenical Resistance Operon Repressor; |
18-78 | 8.92e-16 | |||
helix_turn_helix, Arsenical Resistance Operon Repressor; Pssm-ID: 197713 [Multi-domain] Cd Length: 66 Bit Score: 64.92 E-value: 8.92e-16
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COG1777 | COG1777 | Predicted transcriptional regulator, ArsR family [Transcription]; |
1-78 | 1.77e-14 | |||
Predicted transcriptional regulator, ArsR family [Transcription]; Pssm-ID: 441383 Cd Length: 113 Bit Score: 62.74 E-value: 1.77e-14
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COG4189 | COG4189 | Predicted transcriptional regulator, ArsR family [Transcription]; |
7-61 | 2.49e-14 | |||
Predicted transcriptional regulator, ArsR family [Transcription]; Pssm-ID: 443343 [Multi-domain] Cd Length: 97 Bit Score: 62.28 E-value: 2.49e-14
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HTH_20 | pfam12840 | Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in ... |
8-63 | 1.46e-13 | |||
Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins. Pssm-ID: 432824 [Multi-domain] Cd Length: 61 Bit Score: 59.09 E-value: 1.46e-13
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COG3398 | COG3398 | Predicted transcriptional regulator, contains two HTH domains [Transcription]; |
4-74 | 2.34e-13 | |||
Predicted transcriptional regulator, contains two HTH domains [Transcription]; Pssm-ID: 442625 [Multi-domain] Cd Length: 159 Bit Score: 61.05 E-value: 2.34e-13
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HTH_5 | pfam01022 | Bacterial regulatory protein, arsR family; Members of this family contains a DNA binding ... |
12-56 | 6.62e-12 | |||
Bacterial regulatory protein, arsR family; Members of this family contains a DNA binding 'helix-turn-helix' motif. This family includes other proteins which are not included in the Prosite definition. Pssm-ID: 425993 [Multi-domain] Cd Length: 45 Bit Score: 54.37 E-value: 6.62e-12
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COG2345 | COG2345 | Predicted transcriptional regulator, ArsR family [Transcription]; |
1-62 | 6.15e-11 | |||
Predicted transcriptional regulator, ArsR family [Transcription]; Pssm-ID: 441914 [Multi-domain] Cd Length: 217 Bit Score: 55.70 E-value: 6.15e-11
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PRK10141 | PRK10141 | DNA-binding transcriptional repressor ArsR; Provisional |
8-83 | 1.63e-10 | |||
DNA-binding transcriptional repressor ArsR; Provisional Pssm-ID: 236654 Cd Length: 117 Bit Score: 52.90 E-value: 1.63e-10
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COG4742 | COG4742 | Predicted transcriptional regulator, contains HTH domain [Transcription]; |
13-69 | 7.23e-06 | |||
Predicted transcriptional regulator, contains HTH domain [Transcription]; Pssm-ID: 443776 [Multi-domain] Cd Length: 267 Bit Score: 41.80 E-value: 7.23e-06
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HTH_24 | pfam13412 | Winged helix-turn-helix DNA-binding; |
14-56 | 8.49e-05 | |||
Winged helix-turn-helix DNA-binding; Pssm-ID: 404317 [Multi-domain] Cd Length: 45 Bit Score: 36.26 E-value: 8.49e-05
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COG2512 | COG2512 | Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain ... |
16-69 | 8.88e-05 | |||
Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain [General function prediction only]; Pssm-ID: 442002 [Multi-domain] Cd Length: 80 Bit Score: 37.20 E-value: 8.88e-05
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Lrp | COG1522 | DNA-binding transcriptional regulator, Lrp family [Transcription]; |
12-57 | 4.31e-04 | |||
DNA-binding transcriptional regulator, Lrp family [Transcription]; Pssm-ID: 441131 [Multi-domain] Cd Length: 138 Bit Score: 36.29 E-value: 4.31e-04
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HTH_CRP | smart00419 | helix_turn_helix, cAMP Regulatory protein; |
26-66 | 3.67e-03 | |||
helix_turn_helix, cAMP Regulatory protein; Pssm-ID: 128696 [Multi-domain] Cd Length: 48 Bit Score: 32.41 E-value: 3.67e-03
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MarR_2 | pfam12802 | MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a ... |
16-60 | 6.89e-03 | |||
MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif. Pssm-ID: 432797 [Multi-domain] Cd Length: 60 Bit Score: 31.79 E-value: 6.89e-03
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Blast search parameters | ||||
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