|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-801 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 947.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 1 MKKILIASLLFSS-TAALAGPFVVQDIRVDGVQAGTEGNIIASLPVRVGQKINDANIAGVVRNLFLTGQYEDVKASQQGN 79
Cdd:PRK11067 3 MKKLLIASLLFSSaTVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRDGN 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 80 TLVISVVPKAIISDVVLDGNKSIPNDALKQNLNANGFQKGDILNREKLEAFRKSLEDHYHSVGRYNAKVETIVNPLPNNR 159
Cdd:PRK11067 83 TLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPRNR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 160 AEVKIQIKEKDVALLKGVTFVGNQVFDSDRLQDQMELQPD-AWWKLFGN-KFDSTQFSKDLETIQNYYLDRGYAKAQIVG 237
Cdd:PRK11067 163 VDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEvPWWNVVGDrKYQKQKLAGDLETLRSYYLDRGYARFNIDS 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 238 NDVQLNDEKTEARVTINVSEGEKYTVNGARIVGDVGGMSEQLAPLLKqIHIGEEFHRSDVQAVEDSIKSTLGERGYGSAQ 317
Cdd:PRK11067 243 TQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTK-IEPGELYNGTKVTKMEDDIKKLLGRYGYAYPR 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 318 VNVQPDFNDDAKTVGLSFVVDAGKRYSVRQIRFEGNTVSADSTLRQEMRQQEGSWLSTDLVELGKVRLDRTGFFETVESR 397
Cdd:PRK11067 322 VQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDVD 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 398 TEPVEGTSDEVDVIYKVKERNTGSINFGVGYGTESGLSYQASIKQDNFLGMGSSLSLAGSRNDYGTSVNLGYNEPYFTKD 477
Cdd:PRK11067 402 TQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTVD 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 478 GVSLGGNIFFENYDNSKNSTSaSYARTTYGGNLTLGFPVNENNAYYIGLGYAYNKLKNITPEYNRALYLASLNYN----- 552
Cdd:PRK11067 482 GVSLGGRIFYNDFEADDADLS-DYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENpssds 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 553 EWTFKSHDYDISFGWNYNSLNRGFLPTKGVKASIGGKVTIPGSDNKYYKLNADVQGFYPLNRDQTWVLSGRLGAAYANGF 632
Cdd:PRK11067 561 DNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGL 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 633 GGKRLPFYQTYTAGGIGSLRGFAYSAIGPQAIYINPRVNGCSGSGvnvnsSCYNIVNGDIVGGNAMATASVELIVPTPFV 712
Cdd:PRK11067 641 GGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQASNYTQDG-----AKDLCKSDDAVGGNAMAVASLELITPTPFI 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 713 AEKNENSVRTSFFVDAASVWDTHWKgEKAKFTNLKLPDYGDPSRVRASAGLAFQWQSPIGPLVFSYAKPIKKYENDDIEQ 792
Cdd:PRK11067 716 SDKYANSVRTSFFWDMGTVWDTNWD-NTAYTRAAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQ 794
|
....*....
gi 491684272 793 FQFSIGGSF 801
Cdd:PRK11067 795 FQFNIGKTW 803
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
21-801 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 895.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 21 FVVQDIRVDGVQAGTEGNIIASLPVRVGQKINDANIAGVVRNLFLTGQYEDVKASQQGNTLVISVVPKAIISDVVLDGNK 100
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 101 SIPNDALKQNLNanGFQKGDILNREKLEAFRKSLEDHYHSVGRYNAKVETIVNPLPNNRAEVKIQIKEKDVALLKGVTFV 180
Cdd:TIGR03303 81 EIKKDQLKKALV--GIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 181 GNQVFDSDRLQDQMELQPDAWWKLFG--NKFDSTQFSKDLETIQNYYLDRGYAKAQIVGNDVQLNDEKTEARVTINVSEG 258
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTgdDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 259 EKYTVNGARIVGDVGGMSEQLAPLLKqIHIGEEFHRSDVQAVEDSIKSTLGERGYGSAQVNVQPDFNDDAKTVGLSFVVD 338
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLK-IKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVD 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 339 AGKRYSVRQIRFEGNTVSADSTLRQEMRQQEGSWLSTDLVELGKVRLDRTGFFETVESRTEPVeGTSDEVDVIYKVKERN 418
Cdd:TIGR03303 318 PGKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQP 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 419 TGSINFGVGYGTESGLSYQASIKQDNFLGMGSSLSLAGSRNDYGTSVNLGYNEPYFTKDGVSLGGNIFFENYDNSKNSTS 498
Cdd:TIGR03303 397 TGSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFS 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 499 AsYARTTYGGNLTLGFPVNENNAYYIGLGYAYNKLKNITPEYNRALYLASLNYNEWTfkshDYDISFGWNYNSLNRGFLP 578
Cdd:TIGR03303 477 D-YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKDDSDSDSSASYFIKEQGGKFI----DSSLSYGWSYDTLDSGYFP 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 579 TKGVKASIGGKVTIPGSDNKYYKLNADVQGFYPLNRDQTWVLSGRLGAAYANGFGGKRLPFYQTYTAGGIGSLRGFAYSA 658
Cdd:TIGR03303 552 TKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGFESNG 631
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 659 IGPQAIYinprvngcsgsgvnvnsscyniVNGDIVGGNAMATASVELIVPTPFVaeKNENSVRTSFFVDAASVWDTHWKG 738
Cdd:TIGR03303 632 IGPRDIN----------------------DSGDSIGGNAMATANVELIFPLPFL--PEDNGLRGSVFFDAGNVWGTDQKK 687
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 491684272 739 EkakftnlklPDYGDPSRVRASAGLAFQWQSPIGPLVFSYAKPIKKYENDDIEQFQFSIGGSF 801
Cdd:TIGR03303 688 E---------GDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
23-801 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 640.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 23 VQDIRVDGVQAGTEGNIIASLPVRVGQKINDANIAGVVRNLFLTGQYEDVKASQQGNTLVISVVPKAIISDVVLDGNKSI 102
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 103 PNDALKQNLnanGFQKGDILNREKLEAFRKSLEDHYHSVGRYNAKVETIVnplPNNRAEVKIQIKEKDVALLKGVTFVGN 182
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVTITP---ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 183 QVFDSDRLQDQMELQPDAWWkLFGNKFDSTQFSKDLETIQNYYLDRGYAKAQIVGNDVQLNDEKTEARVTINVSEGEKYT 262
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWL-TKSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQYK 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 263 VNGARIVGDVGGmSEQLAPLLKqIHIGEEFHRSDVQAVEDSIKSTLGERGYGSAQVNVQPDFNDDAKTVGLSFVVDAGKR 342
Cdd:COG4775 234 VGDIKFEGNLVD-EEELRKLLK-IKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGPR 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 343 YSVRQIRFEGNTVSADSTLRQEMRQQEGSWLSTDLVELGKVRLDRTGFFETVESRTEPVEGTSDEVDVIYKVKERNTGSI 422
Cdd:COG4775 312 VYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGSL 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 423 NFGVGYGTESGLSYQASIKQDNFLGMGSSLSLAGSRNDYGTSVNLGYNEPYFTKDGVSLGGNIFFENYDNSKNStsaSYA 502
Cdd:COG4775 392 SLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASDYS---SYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 503 RTTYGGNLTLGFPVNENNAYYIGLGYAYNKLKNITPeynralylASLNYNEWTFKSHDYDISFGWNYNSLNRGFLPTKGV 582
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDS--------SPDYLPDQNGSSNTSSLGLGLTYDTRDNPLFPTRGS 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 583 KASIGGKVTIP--GSDNKYYKLNADVQGFYPLNRDqtWVLSGRLGAAYANGFgGKRLPFYQTYTAGGIGSLRGFAYSAIG 660
Cdd:COG4775 541 YLSLSLEFAGPylGGDLEYYKLSADARYYFPLGKK--LVLALRAEAGYLGGY-GKDLPFFERFYLGGFGSLRGYEENSLG 617
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 661 PQaiyinprvngcsgsgvnvnsscynivngdiVGGNAMATASVELIVPTPFvaeKNENSVRTSFFVDAASVWDThwkgek 740
Cdd:COG4775 618 PR------------------------------LGGNAYLLGSAELRFPLPL---PPSAGLRGALFVDAGNVWDS------ 658
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491684272 741 akftnlklPDYGDPSRVRASAGLAFQWQSPIGPLVFSYAKPIKKYENDDIEQFQFSIGGSF 801
Cdd:COG4775 659 --------GDDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
444-797 |
8.49e-104 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 322.38 E-value: 8.49e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 444 NFLGMGSSLSLAGSRNDYGTSVNLGYNEPYFTKDGVSLGGNIFFENYDNSKNsTSASYARTTYGGNLTLGFPVNENNAYY 523
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRD-SSDSYRITTYGFSVSLGRPITENWSLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 524 IGLGYAYNKLKNITPEYNRALYLASLNYnewTFKSHDYDISFGWNYNSLNRGFLPTKGVKASIGGKVTI--PGSDNKYYK 601
Cdd:pfam01103 80 LGLGYQHNKILDESGSPNIRNYYPSASG---TGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGDVSYYK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 602 LNADVQGFYPLNRDQTWVLSGRLGAAYANGFGGKRLPFYQTYTAGGIGSLRGFAYSAIGPQAIyinprvngcsgsgvnvn 681
Cdd:pfam01103 157 LTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPRDE----------------- 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 682 sscynivNGDIVGGNAMATASVELIVPTPFVAeknENSVRTSFFVDAASVWDTHWKgekakfTNLKLPDYGDPSRVRASA 761
Cdd:pfam01103 220 -------DGDALGGNSYVVASLELRFPLPFVP---KQSVRGVLFFDAGNVWNTGST------DPGSSRGARSKAGIRASV 283
|
330 340 350
....*....|....*....|....*....|....*.
gi 491684272 762 GLAFQWQSPIGPLVFSYAKPIKKYENDDIEQFQFSI 797
Cdd:pfam01103 284 GVGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-801 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 947.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 1 MKKILIASLLFSS-TAALAGPFVVQDIRVDGVQAGTEGNIIASLPVRVGQKINDANIAGVVRNLFLTGQYEDVKASQQGN 79
Cdd:PRK11067 3 MKKLLIASLLFSSaTVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRDGN 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 80 TLVISVVPKAIISDVVLDGNKSIPNDALKQNLNANGFQKGDILNREKLEAFRKSLEDHYHSVGRYNAKVETIVNPLPNNR 159
Cdd:PRK11067 83 TLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPRNR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 160 AEVKIQIKEKDVALLKGVTFVGNQVFDSDRLQDQMELQPD-AWWKLFGN-KFDSTQFSKDLETIQNYYLDRGYAKAQIVG 237
Cdd:PRK11067 163 VDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEvPWWNVVGDrKYQKQKLAGDLETLRSYYLDRGYARFNIDS 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 238 NDVQLNDEKTEARVTINVSEGEKYTVNGARIVGDVGGMSEQLAPLLKqIHIGEEFHRSDVQAVEDSIKSTLGERGYGSAQ 317
Cdd:PRK11067 243 TQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTK-IEPGELYNGTKVTKMEDDIKKLLGRYGYAYPR 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 318 VNVQPDFNDDAKTVGLSFVVDAGKRYSVRQIRFEGNTVSADSTLRQEMRQQEGSWLSTDLVELGKVRLDRTGFFETVESR 397
Cdd:PRK11067 322 VQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDVD 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 398 TEPVEGTSDEVDVIYKVKERNTGSINFGVGYGTESGLSYQASIKQDNFLGMGSSLSLAGSRNDYGTSVNLGYNEPYFTKD 477
Cdd:PRK11067 402 TQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTVD 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 478 GVSLGGNIFFENYDNSKNSTSaSYARTTYGGNLTLGFPVNENNAYYIGLGYAYNKLKNITPEYNRALYLASLNYN----- 552
Cdd:PRK11067 482 GVSLGGRIFYNDFEADDADLS-DYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENpssds 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 553 EWTFKSHDYDISFGWNYNSLNRGFLPTKGVKASIGGKVTIPGSDNKYYKLNADVQGFYPLNRDQTWVLSGRLGAAYANGF 632
Cdd:PRK11067 561 DNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGL 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 633 GGKRLPFYQTYTAGGIGSLRGFAYSAIGPQAIYINPRVNGCSGSGvnvnsSCYNIVNGDIVGGNAMATASVELIVPTPFV 712
Cdd:PRK11067 641 GGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQASNYTQDG-----AKDLCKSDDAVGGNAMAVASLELITPTPFI 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 713 AEKNENSVRTSFFVDAASVWDTHWKgEKAKFTNLKLPDYGDPSRVRASAGLAFQWQSPIGPLVFSYAKPIKKYENDDIEQ 792
Cdd:PRK11067 716 SDKYANSVRTSFFWDMGTVWDTNWD-NTAYTRAAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQ 794
|
....*....
gi 491684272 793 FQFSIGGSF 801
Cdd:PRK11067 795 FQFNIGKTW 803
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
21-801 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 895.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 21 FVVQDIRVDGVQAGTEGNIIASLPVRVGQKINDANIAGVVRNLFLTGQYEDVKASQQGNTLVISVVPKAIISDVVLDGNK 100
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 101 SIPNDALKQNLNanGFQKGDILNREKLEAFRKSLEDHYHSVGRYNAKVETIVNPLPNNRAEVKIQIKEKDVALLKGVTFV 180
Cdd:TIGR03303 81 EIKKDQLKKALV--GIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 181 GNQVFDSDRLQDQMELQPDAWWKLFG--NKFDSTQFSKDLETIQNYYLDRGYAKAQIVGNDVQLNDEKTEARVTINVSEG 258
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTgdDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 259 EKYTVNGARIVGDVGGMSEQLAPLLKqIHIGEEFHRSDVQAVEDSIKSTLGERGYGSAQVNVQPDFNDDAKTVGLSFVVD 338
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLK-IKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVD 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 339 AGKRYSVRQIRFEGNTVSADSTLRQEMRQQEGSWLSTDLVELGKVRLDRTGFFETVESRTEPVeGTSDEVDVIYKVKERN 418
Cdd:TIGR03303 318 PGKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQP 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 419 TGSINFGVGYGTESGLSYQASIKQDNFLGMGSSLSLAGSRNDYGTSVNLGYNEPYFTKDGVSLGGNIFFENYDNSKNSTS 498
Cdd:TIGR03303 397 TGSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFS 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 499 AsYARTTYGGNLTLGFPVNENNAYYIGLGYAYNKLKNITPEYNRALYLASLNYNEWTfkshDYDISFGWNYNSLNRGFLP 578
Cdd:TIGR03303 477 D-YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKDDSDSDSSASYFIKEQGGKFI----DSSLSYGWSYDTLDSGYFP 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 579 TKGVKASIGGKVTIPGSDNKYYKLNADVQGFYPLNRDQTWVLSGRLGAAYANGFGGKRLPFYQTYTAGGIGSLRGFAYSA 658
Cdd:TIGR03303 552 TKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGFESNG 631
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 659 IGPQAIYinprvngcsgsgvnvnsscyniVNGDIVGGNAMATASVELIVPTPFVaeKNENSVRTSFFVDAASVWDTHWKG 738
Cdd:TIGR03303 632 IGPRDIN----------------------DSGDSIGGNAMATANVELIFPLPFL--PEDNGLRGSVFFDAGNVWGTDQKK 687
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 491684272 739 EkakftnlklPDYGDPSRVRASAGLAFQWQSPIGPLVFSYAKPIKKYENDDIEQFQFSIGGSF 801
Cdd:TIGR03303 688 E---------GDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
23-801 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 640.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 23 VQDIRVDGVQAGTEGNIIASLPVRVGQKINDANIAGVVRNLFLTGQYEDVKASQQGNTLVISVVPKAIISDVVLDGNKSI 102
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 103 PNDALKQNLnanGFQKGDILNREKLEAFRKSLEDHYHSVGRYNAKVETIVnplPNNRAEVKIQIKEKDVALLKGVTFVGN 182
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVTITP---ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 183 QVFDSDRLQDQMELQPDAWWkLFGNKFDSTQFSKDLETIQNYYLDRGYAKAQIVGNDVQLNDEKTEARVTINVSEGEKYT 262
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWL-TKSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQYK 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 263 VNGARIVGDVGGmSEQLAPLLKqIHIGEEFHRSDVQAVEDSIKSTLGERGYGSAQVNVQPDFNDDAKTVGLSFVVDAGKR 342
Cdd:COG4775 234 VGDIKFEGNLVD-EEELRKLLK-IKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGPR 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 343 YSVRQIRFEGNTVSADSTLRQEMRQQEGSWLSTDLVELGKVRLDRTGFFETVESRTEPVEGTSDEVDVIYKVKERNTGSI 422
Cdd:COG4775 312 VYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGSL 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 423 NFGVGYGTESGLSYQASIKQDNFLGMGSSLSLAGSRNDYGTSVNLGYNEPYFTKDGVSLGGNIFFENYDNSKNStsaSYA 502
Cdd:COG4775 392 SLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASDYS---SYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 503 RTTYGGNLTLGFPVNENNAYYIGLGYAYNKLKNITPeynralylASLNYNEWTFKSHDYDISFGWNYNSLNRGFLPTKGV 582
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDS--------SPDYLPDQNGSSNTSSLGLGLTYDTRDNPLFPTRGS 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 583 KASIGGKVTIP--GSDNKYYKLNADVQGFYPLNRDqtWVLSGRLGAAYANGFgGKRLPFYQTYTAGGIGSLRGFAYSAIG 660
Cdd:COG4775 541 YLSLSLEFAGPylGGDLEYYKLSADARYYFPLGKK--LVLALRAEAGYLGGY-GKDLPFFERFYLGGFGSLRGYEENSLG 617
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 661 PQaiyinprvngcsgsgvnvnsscynivngdiVGGNAMATASVELIVPTPFvaeKNENSVRTSFFVDAASVWDThwkgek 740
Cdd:COG4775 618 PR------------------------------LGGNAYLLGSAELRFPLPL---PPSAGLRGALFVDAGNVWDS------ 658
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491684272 741 akftnlklPDYGDPSRVRASAGLAFQWQSPIGPLVFSYAKPIKKYENDDIEQFQFSIGGSF 801
Cdd:COG4775 659 --------GDDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
444-797 |
8.49e-104 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 322.38 E-value: 8.49e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 444 NFLGMGSSLSLAGSRNDYGTSVNLGYNEPYFTKDGVSLGGNIFFENYDNSKNsTSASYARTTYGGNLTLGFPVNENNAYY 523
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRD-SSDSYRITTYGFSVSLGRPITENWSLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 524 IGLGYAYNKLKNITPEYNRALYLASLNYnewTFKSHDYDISFGWNYNSLNRGFLPTKGVKASIGGKVTI--PGSDNKYYK 601
Cdd:pfam01103 80 LGLGYQHNKILDESGSPNIRNYYPSASG---TGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGDVSYYK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 602 LNADVQGFYPLNRDQTWVLSGRLGAAYANGFGGKRLPFYQTYTAGGIGSLRGFAYSAIGPQAIyinprvngcsgsgvnvn 681
Cdd:pfam01103 157 LTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPRDE----------------- 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 682 sscynivNGDIVGGNAMATASVELIVPTPFVAeknENSVRTSFFVDAASVWDTHWKgekakfTNLKLPDYGDPSRVRASA 761
Cdd:pfam01103 220 -------DGDALGGNSYVVASLELRFPLPFVP---KQSVRGVLFFDAGNVWNTGST------DPGSSRGARSKAGIRASV 283
|
330 340 350
....*....|....*....|....*....|....*.
gi 491684272 762 GLAFQWQSPIGPLVFSYAKPIKKYENDDIEQFQFSI 797
Cdd:pfam01103 284 GVGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
229-801 |
8.54e-63 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 221.31 E-value: 8.54e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 229 GYAKAQIvgnDVQLNDEKTEARVTINVSEGEKYTVNGARIVGDVGGMSEQLAPLLKQ---IHIGEEFHRSDVQAVEDSIK 305
Cdd:COG0729 72 GYYSPTV---TIRLDGRDGPWTVTITVDPGPPVRIGKVDIELLGEAAQDPARRKLLAawpLKPGDPLRHGAYEAAKSALL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 306 STLGERGY-----GSAQVNVQPDfnddAKTVGLSFVVDAGKRYSVRQIRFEGNTVSADSTLRQEMRQQEGSWLSTDLVEL 380
Cdd:COG0729 149 DALRERGYpdarfTQSRAEVDPA----TNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRLAPFKPGEPYSPDKLLE 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 381 GKVRLDRTGFFETVESRTEPVEGTSDEVDVIYKVKERNTGSINFGVGYGTESGLSYQASIKQDNFLGMGSSLSLAGSRND 460
Cdd:COG0729 225 LQQRLQSTGYFSSVRVTPDEDPAPDGTVPVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRNLFGRGHRLRLELELSQ 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 461 YGTSVNLGYNEPYFTKDGVSLGGNIFFENYDNSknstsaSYARTTYGGNLTLGFPVNENNAYYIGLGYAYNKLKNITPEY 540
Cdd:COG0729 305 PEQSLSADYRIPPLFPLGQYLSLGAGLEREDTD------DYDSRSLTLGAGRTRRLSDGWTRSLGLRLLYERFTDGDDDR 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 541 N-RALYLaslnynewtfkshdydiSFGWNYNSLNRGFLPTKG--VKASIGGKVTIPGSDNKYYKLNADVQGFYPLNRDQT 617
Cdd:COG0729 379 TyTLLSP-----------------GLSWTRDRRDDPLDPTRGyrLSLELGPGSKLLGSDTSFLRLYARGSWYRPLGERHR 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 618 WVLSGRLGAAYANGFGgkRLP----FYqtytAGGIGSLRGFAYSAIGPQAIyinprvngcsgsgvnvnsscynivNGDIV 693
Cdd:COG0729 442 LAGRAELGAILGADFD--DVPpslrFF----AGGDGSVRGYGYQSLGPRDG------------------------DGDVI 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 694 GGNAMATASVELIVPtpfVAEKnensVRTSFFVDAASVWDthwkgekakftnlKLPDygdpSRVRASAGLAFQWQSPIGP 773
Cdd:COG0729 492 GGRSLAVGSLEYRYR---VTEN----WGLAVFVDAGNAFN-------------DFPF----SDLKVGAGLGLRWYSPVGP 547
|
570 580
....*....|....*....|....*...
gi 491684272 774 LVFSYAKPIKKYENDDIeQFQFSIGGSF 801
Cdd:COG0729 548 IRLDLAYPLNDRDDSSF-RLYISLGQAF 574
|
|
| FhaC |
COG2831 |
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular ... |
248-801 |
1.55e-18 |
|
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442079 [Multi-domain] Cd Length: 547 Bit Score: 90.01 E-value: 1.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 248 EARVTINVSEGEKYTVNGARIVGDVGGMSEQLAPLLKQiHIGEEFHRSDVQAVEDSIKSTLGERGYGSAQVNVQP-DFND 326
Cdd:COG2831 51 AAPAAPPAAEGPCFTIKRIRVEGNTVLPEEELQALLAP-YLGRCLTLADLNALADAITNLYRDRGYITSRAYLPPqDLSD 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 327 DAktvgLSFVVDAGKrysVRQIRFEGNTVSADSTLRQEMRQQEGSWLSTDLVELGKVRLDRTGFfETVESRTEPVEgTSD 406
Cdd:COG2831 130 GV----LRIQVVEGR---VGRIRVEGNSRLSRAYLRSALPLAEGKPLNLRDLEQGLLLLNRLPG-VQVTAELRPGT-EPG 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 407 EVDVIYKVKERNTGSINFGV-GYGTESGLSYQ--ASIKQDNFLGMGSSLSLAGSR---NDYGTSVNLGYNEPYFTkDGVS 480
Cdd:COG2831 201 TSDLVVTVEEAKPFRGSLGLdNSGSPSTGRYRlgASLSLDNLLGLGDQLSLSYSRsldGDGSRSYSLSYSVPLGY-WGLT 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 481 LGGNIFFENYDNSKNSTSASYARTTYGGNLTLGFPVNENNAY--YIGLGYAYNKLKNitpEYNRA-LYLASLNYNEWTFk 557
Cdd:COG2831 280 LGLSYSRYRSRVGGPFGTLDISGKSQTYGLRLSYPLIRSRDQklSLSLGLDYKDSRN---YLLGTeIEVQRRRLSVLRL- 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 558 SHDYDISFGWNYNSLNRGFLPTKGVKASIGGKVTIPGSDNKYYKLNADVQGFYPLNRDqtWVLSGRLGAAYANgfggKRL 637
Cdd:COG2831 356 GLSYTRRLGGGVLSLSLSFSQGLDWLGATPAPDASRGPDGRFTKLRLSASRVQPLPQD--FSLLLRLDGQYSS----DPL 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 638 PFYQTYTAGGIGSLRGF-AYSAIGPQAIYinprvngcsgsgvnvnsscynivngdivggnamatASVELIvpTPFVAEKN 716
Cdd:COG2831 430 LSSEQFSLGGRYSVRGYdEGELSGDNGWY-----------------------------------LSNELR--WPLPRLSL 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 717 ENSVRTSFFVDAASVWDTHWKGEKAKFTNLklpdygdpsrvrASAGLAFQWQsPIGPLV--FSYAKPIKKYEND-DIEQF 793
Cdd:COG2831 473 LGGLQLYAFLDAGRVWNNSALPGQLNGRTL------------AGAGLGLRLS-LGKNLSldLDYARPLGDPDGDtDNRRL 539
|
....*...
gi 491684272 794 QFSIGGSF 801
Cdd:COG2831 540 YFSLSYSF 547
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
175-258 |
1.62e-13 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 66.21 E-value: 1.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 175 KGVTFVGNQVFDSDRLQDQMELQPdawwklfGNKFDSTQFSKDLETIQNYYLDRGYAKAQiVGNDVQLNDEKTEARVTIN 254
Cdd:pfam07244 3 GDINFEGNKKTKDEELRRLLGLKE-------GDVYNREKLEEDKEALKDRYGRLGYFDAS-VSTNVEIDDEVNTVDLTFN 74
|
....
gi 491684272 255 VSEG 258
Cdd:pfam07244 75 VDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
90-169 |
6.13e-11 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 58.89 E-value: 6.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 90 IISDVVLDGNKSIPNDALKQNLnanGFQKGDILNREKLEAFRKSLEDHYHSVGRYNAKVETIVN-PLPNNRAEVKIQIKE 168
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLL---GLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEiDDEVNTVDLTFNVDE 77
|
.
gi 491684272 169 K 169
Cdd:pfam07244 78 G 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
345-417 |
3.40e-09 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 53.88 E-value: 3.40e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491684272 345 VRQIRFEGNTVSADSTLRQEMRQQEGSWLSTDLVE----LGKVRLDRTGFFETVESRTEPVEGTSDEVDVIYKVKER 417
Cdd:pfam07244 2 IGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEedkeALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
|
|
| 3a0901s03IAP75 |
TIGR00992 |
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved ... |
297-660 |
2.80e-08 |
|
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130065 [Multi-domain] Cd Length: 718 Bit Score: 57.28 E-value: 2.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 297 VQAVEDSIKSTLGERGYGSAQVNVQPDFNddAKTVGLSFVVDAGKRYSVRQIRFEGNTV---SADSTLRQEMRQQ--EGS 371
Cdd:TIGR00992 225 LQEIRDRVQEWYHNEGYACAQVVNFGNLN--TDEVVCEVVEGDITNLQIQFFDKLGNVVegnTRDPVVTRELPKQlkPGD 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 372 WLSTDLVELGKVRLDRTGFFETVESRTEPVEGTSDEVDVIYKVKERNTG--------SINFGVGYG---TESGLSYQASI 440
Cdd:TIGR00992 303 VFNIEAGKTALQNINSLGLFSNIEVNPRPDEMNEGEIIVEIKLKELEQKsaevstewSIVPGRGGRptlASSQPGGTITF 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 441 KQDNFLGMGSSLSLAGSRNDYGT-----SVNLGYNEPYFtkDGV------SLGGNIF--------FENYDNSKNSTSASY 501
Cdd:TIGR00992 383 EHRNLQGLNRSLGGSVTTSNFLNpqddlLFKVEYTHPYL--DGVdnprnrTYTASCFnsrklspvFTGGPGVNEVPSIWV 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 502 ARTTYGGNLTLGFPVNENNAYYIGL--GYAYNKLKNITPEYNRALYLASLNYNEWTFKSHDYDI------SFGWNYNSLN 573
Cdd:TIGR00992 461 DRAGVKANITENFARQSKFTYGLVMeeIFTRDESRHINANGQRSLPSGPISADGPPTTLSGTGVdrmaflQANITRDNTN 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491684272 574 RGFLPTKGVKASIGGKVTIP-GSDNKYY-KLNADVQGFYPLN---------RDQTWVLSGRLGAAYANgfggkrLPFYQT 642
Cdd:TIGR00992 541 FVNGPTVGSRVRFQVDQGLGvGSGFPFFnRHQLTYTKFIQLNwvelgagksPPPVLVLHGHYGGCVGD------LPSYDA 614
|
410
....*....|....*...
gi 491684272 643 YTAGGIGSLRGFAYSAIG 660
Cdd:TIGR00992 615 FILGGPYSVRGYNMGELG 632
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
262-340 |
2.32e-07 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 48.88 E-value: 2.32e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491684272 262 TVNGARIVGDVGGMSEQLAPLLKqIHIGEEFHRSDVQAVEDSIKSTLGERGYGSAQVNVQPDFNDDAKTVGLSFVVDAG 340
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLG-LKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
|
|
| |
