|
Name |
Accession |
Description |
Interval |
E-value |
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
354-559 |
3.32e-29 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 115.40 E-value: 3.32e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 354 AEMQRALNLAKNDQSAEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEQIKTPAR--KDWPLFYQRG 431
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAlpDLAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 432 IAYERLQEWDKAEPNFRKALELYPDQPQVLNYLGYSWVdRNENLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYND 511
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYL-LLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 492824367 512 AVVELEKAVKLRPEDPTINDHMGDAYWRVGR-----LLEATFQWNHAIAGKPE 559
Cdd:COG4785 160 AIADLEKALELDPNDPERALWLYLAERKLDPekalaLLLEDWATAYLLQGDTE 212
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
22-546 |
6.37e-27 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 116.34 E-value: 6.37e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 22 AISTSGALAKTTPDPVRAQVRAGSfagAYLAGRTAESddnlsaAVDFYRQAMAFDPNNSQIKQDLMLVLLTEGR------ 95
Cdd:TIGR02917 348 AIATLSPALGLDPDDPAALSLLGE---AYLALGDFEK------AAEYLAKATELDPENAAARTQLGISKLSQGDpseaia 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 96 -FKDALPLAHELQNVtaierfsRLALAIDAINRQQYRKVGPLLMfSLQSDM--DRLLINLMNAwVKVGQGNPKEALADVQ 172
Cdd:TIGR02917 419 dLETAAQLDPELGRA-------DLLLILSYLRSGQFDKALAAAK-KLEKKQpdNASLHNLLGA-IYLGKGDLAKAREAFE 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 173 KMDGPEWYDLFRTYNAALIADLAGRKQEARDYYQQAIddrrggsAAPDTYERVVMAFAAFKLRQGDRAGAIKTLKDAEEL 252
Cdd:TIGR02917 490 KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL-------TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 253 ----LNGRMTITEMREKIEAGHKYGRLVKTAQDGA---AETLYTLGTAINRSGAEAFAKLYLQMSLPLRPDNDATLYQLG 325
Cdd:TIGR02917 563 npqeIEPALALAQYYLGKGQLKKALAILNEAADAApdsPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA 642
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 326 DISAKLHEPQKAVEYYGRVPEQSPYRRDAEMQRALNLAKNDQSAEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADA 405
Cdd:TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 406 AKIYDAAVEQIKTPAR-----------------------------KDWPLFYQRGIAYERLQEWDKAEPNFRKALELYPD 456
Cdd:TIGR02917 723 IQAYRKALKRAPSSQNaiklhrallasgntaeavktleawlkthpNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 457 QPQVLNYLgySWVDRNENLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLRPEDPTINDHMGDA 536
Cdd:TIGR02917 803 NAVVLNNL--AWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880
|
570
....*....|
gi 492824367 537 YWRVGRLLEA 546
Cdd:TIGR02917 881 LLATGRKAEA 890
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
382-618 |
1.07e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 108.94 E-value: 1.07e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 382 DKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEQiktpARKDWPLFYQRGIAYERLQEWDKAEPNFRKALELYPDQPQVL 461
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL----DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 462 NYLGYSWVDRNeNLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLRPEDPTINDHMGDAYWRVG 541
Cdd:COG0457 80 NNLGLALQALG-RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492824367 542 RLLEATFQWNHAIAGKPEPEELAKIKEKLKKGLPDIPGQSAADATKPAGKKPDEAKPEAPAPSATPAAPSDKAPEKP 618
Cdd:COG0457 159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRL 235
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
428-559 |
2.09e-24 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 99.11 E-value: 2.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 428 YQRGIAYERLQEWDKAEPNFRKALELYPDQPQVLNYLGYSWVDRNeNLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLG 507
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-DLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 492824367 508 RYNDAVVELEKAVKLRPEDPTINDHMGDAYWRVGRLLEATFQWNHAIAGKPE 559
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
322-563 |
2.38e-23 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 100.19 E-value: 2.38e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 322 YQLGDISAKLHEPQKAVEYYGRVPEQSPYRRDAEMQRALNLAKNDQSAEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKN 401
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 402 FADAAKIYDAAVEQiktpARKDWPLFYQRGIAYERLQEWDKAEPNFRKALELYPDQPQVLNYLGYSWVDRNeNLDEALNM 481
Cdd:COG2956 92 LDRAEELLEKLLEL----DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG-DYDEAIEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 482 IRKAVELRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLRPEDPTINDHMGDAYWRVGRLLEATFQWNHAIAGKPEPE 561
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD 246
|
..
gi 492824367 562 EL 563
Cdd:COG2956 247 LL 248
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
357-572 |
2.54e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 97.11 E-value: 2.54e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 357 QRALNLAKNDQSAEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEQiktpARKDWPLFYQRGIAYER 436
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER----DPDRAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 437 LQEWDKAEPNFRKALELYPDQPQVLNYLGYSWVDRNEnLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYNDAVVEL 516
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGD-WEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 517 EKAVKLRPEDPTINDHMGDAYWRVGRLLEATFQWNHAIAGKPEP----EELAKIKEKLKK 572
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYlpalPRLAELYEKLGD 227
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
51-558 |
9.63e-21 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 97.08 E-value: 9.63e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 51 LAGRTAESDDNLSAAVDFYRQAMAFDPNNSQIKQDLMLVLLTEGRFKDAL-------------PLAHELQ---------- 107
Cdd:TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEkhadallkkapnsPLAHYLKalvdfqkkny 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 108 -----NVTAIERF------SRLALAIDAINRQQYRKVGPLLMFSLQSDMDRLLINLMNAWVKVGQGNPKEALADVQKMdg 176
Cdd:TIGR02917 278 edareTLQDALKSapeylpALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPA-- 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 177 pewydLFRTYNAALIADLAGRKQ-EARDYYQQAIDDRRGGSAAPDTYErVVMAFAAFKLRQGDRAGAIKTLKDAEElLNG 255
Cdd:TIGR02917 356 -----LGLDPDDPAALSLLGEAYlALGDFEKAAEYLAKATELDPENAA-ARTQLGISKLSQGDPSEAIADLETAAQ-LDP 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 256 RMTITEM--------REKIEAGHKYGRLVKTAQDGAAETLYTLGTAINRSGAEAFAKLYLQMSLPLRPDNDATLYQLGDI 327
Cdd:TIGR02917 429 ELGRADLllilsylrSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 328 SAKLHEPQKAVEYYGRVPEQSPYRRDAEMQRALNLAKNDQSAEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAK 407
Cdd:TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 408 IYDAAVEQIKTPARkdwpLFYQRGIAYERLQEWDKAEPNFRKALELYPDQPQVLNYLGYSWvDRNENLDEALNMIRKAVE 487
Cdd:TIGR02917 589 ILNEAADAAPDSPE----AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY-AVMKNYAKAITSLKRALE 663
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492824367 488 LRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLRPEDPTINDHMGDAYWRVGRLLEATFQWNHAIAGKP 558
Cdd:TIGR02917 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
186-489 |
3.03e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 88.25 E-value: 3.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 186 YNAALIADLAGRKQEARDYYQQAIDdrrggsAAPDTYErVVMAFAAFKLRQGDRAGAIKTLKDAEELlngrmtitemrek 265
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALE------LDPETVE-AHLALGNLYRRRGEYDRAIRIHQKLLER------------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 266 ieaghkygrlvktaQDGAAETLYTLGTAINRSGAEAFAKLYLQMSLPLRPDNDATLYQLGDISAKLHEPQKAVEYYGRVP 345
Cdd:COG2956 72 --------------DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 346 EQSPYRRDAEMQRALNLAKNDQSAEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEQiktpARKDWP 425
Cdd:COG2956 138 KLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ----DPDYLP 213
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492824367 426 LFYQRGIAYERLQEWDKAEPNFRKALELYPDQPQVLNYlgYSWVDRNENLDEALNMIRKAVELR 489
Cdd:COG2956 214 ALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL--ADLLERKEGLEAALALLERQLRRH 275
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
346-559 |
1.87e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 83.12 E-value: 1.87e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 346 EQSPYRRDAEMQRALNLAKNDQSAEAIKQLKVLLGRdksdMRTYLALGGVYAQDKNFADAAKIYDAAVEQIKTPARKDWP 425
Cdd:COG3914 7 LALAALAAAALLAAAAAAELALAAELEAAALAAALG----LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 426 LFYQRgiaYERLQEWDKAEPNFRKALELYPDQPQVLNYLGYSWVDRNeNLDEALNMIRKAVELRPQDGYIVDSLGWAYYQ 505
Cdd:COG3914 83 LAALL---LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG-RLEEALAALRRALALNPDFAEAYLNLGEALRR 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 492824367 506 LGRYNDAVVELEKAVKLRPEDPTINDHMGDAYWRVGRLLEATFQWNHAIAGKPE 559
Cdd:COG3914 159 LGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD 212
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
306-533 |
2.47e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 82.73 E-value: 2.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 306 YLQMSLPLRPDNDATLYQLGDISAKLH---EPQKAVEYYGRVPEQSPYRRDAEMQRALNLAKNDQSAEAIKQLKVLLGRD 382
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELAlaaELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 383 ksdmrtYLALGGVYAQDKNFADAAKIYDAAVEQiktpARKDWPLFYQRGIAYERLQEWDKAEPNFRKALELYPDQPQVLN 462
Cdd:COG3914 81 ------LELAALLLQALGRYEEALALYRRALAL----NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492824367 463 YLGYSWVDRNeNLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLRPEDPTINDHM 533
Cdd:COG3914 151 NLGEALRRLG-RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
384-526 |
2.96e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.00 E-value: 2.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 384 SDMRTYLALGGVYAQDKNFADAAKIYDAAVEQiktpARKDWPLFYQRGIAYERLQEWDKAEPNFRKALELYPDQPQVLNY 463
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL----DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492824367 464 LGYSWVdRNENLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLRPED 526
Cdd:COG4783 78 LGLALL-KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
442-572 |
4.89e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 66.18 E-value: 4.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 442 KAEPNFRKALELYPDQPQVLNYLGYSWVdRNENLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVK 521
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYL-RLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 492824367 522 LRPEDPTINDHMGDAYWRVGRLLEATFQWNHAIAGKPEPEELAKIKEKLKK 572
Cdd:COG4235 80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAE 130
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
422-527 |
7.07e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 65.80 E-value: 7.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 422 KDWPLFYQRGIAYERLQEWDKAEPNFRKALELYPDQPQVLNYLGYSWVdRNENLDEALNMIRKAVELRPQDGYIVDSLGW 501
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALL-AAGDTEEAEELLERALALDPDNPEALYLLGL 93
|
90 100
....*....|....*....|....*.
gi 492824367 502 AYYQLGRYNDAVVELEKAVKLRPEDP 527
Cdd:COG4235 94 AAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
389-524 |
1.54e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 65.75 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 389 YLALGGVYAQDKNFADAAKIYDAAVEQIKTPARKDWPLFYQRGIAYERLQEWDKAEPNFRKALELYPDQPQVLNYLGYSW 468
Cdd:COG5010 19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLY 98
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 492824367 469 vDRNENLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLRP 524
Cdd:COG5010 99 -SRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
433-525 |
1.64e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 63.65 E-value: 1.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 433 AYERLQEWDKAEPNFRKALELYPDQPQVLNYLGYSWVDRNeNLDEALNmIRKAVELRPQDGYIVDSLGWAYYQLGRYNDA 512
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-RYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|...
gi 492824367 513 VVELEKAVKLRPE 525
Cdd:COG3063 79 LAYLERALELDPS 91
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
427-572 |
1.75e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.22 E-value: 1.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 427 FYQRGIAYERLQEWDKAEPNFRKALELYPDQPQVLNYLGYSWVDRNEnLDEALNMIRKAVELRPQDGYIVDSLGWAYYQL 506
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGE-YDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 507 GRYNDAVVELEKAVKLRPEDPTINDHMGDAYWRVGRLLEATFQWNHAIAGKPEPE----ELAKIKEKLKK 572
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAhaycELAELYLEQGD 159
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
47-563 |
2.26e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 70.11 E-value: 2.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 47 AGAYLAGRtaesddNLSAAVDFYRQAMAFDPNNSQIKQDLMLVLLTEGRFKDALPLAHElqnvtaierfsrlALAIDAIN 126
Cdd:TIGR02917 132 GLAYLGLG------QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDE-------------VLTADPGN 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 127 RQQYRKVGPLLMFS---------------LQSDMDRLLINLMNAWVKVGQGNPKEALADVQKMDGPEwyDLFRTYNAALI 191
Cdd:TIGR02917 193 VDALLLKGDLLLSLgnielalaayrkaiaLRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPN--SPLAHYLKALV 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 192 ADLAGRKQEARDYYQQAIddrrggSAAPDTYERVVMAFAA-FKLRQGDRAGAI--KTLKDAEELLNGR--MTITEMREKI 266
Cdd:TIGR02917 271 DFQKKNYEDARETLQDAL------KSAPEYLPALLLAGASeYQLGNLEQAYQYlnQILKYAPNSHQARrlLASIQLRLGR 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 267 eaghkygrlvktaqdgAAETLYTLGTAINRSgaeafaklylqmslplrPDNDATLYQLGDISAKLHEPQKAVEYYGRVPE 346
Cdd:TIGR02917 345 ----------------VDEAIATLSPALGLD-----------------PDDPAALSLLGEAYLALGDFEKAAEYLAKATE 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 347 QSPYRRDAEMQRAL-NLAKNDQSaEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEQiktpaRKDWP 425
Cdd:TIGR02917 392 LDPENAAARTQLGIsKLSQGDPS-EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-----QPDNA 465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 426 LFYQ-RGIAYERLQEWDKAEPNFRKALELYPDQPQVLNYLgySWVDRNE-NLDEALNMIRKAVELRPQDGYIVDSLGWAY 503
Cdd:TIGR02917 466 SLHNlLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL--ARIDIQEgNPDDAIQRFEKVLTIDPKNLRAILALAGLY 543
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 504 YQLGRYNDAVVELEKAVKLRPEDPTINDHMGDAYWRVGRLLEATFQWNHAIAGKPEPEEL 563
Cdd:TIGR02917 544 LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
403-558 |
5.94e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.83 E-value: 5.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 403 ADAAKIYDAAVEQIKTPARKDWPLFYQRGIAYERLQEWDKAEPNFRKALELYPDQPQVLNYLGYswvDRNENLDEALNMI 482
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLY---NKLGDFEESLALL 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492824367 483 RKAVELRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLRPEDPTINDHMGDAYWRVGRLLEATFQWNHAIAGKP 558
Cdd:COG5010 78 EQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
471-559 |
2.49e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.18 E-value: 2.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 471 RNENLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYNDAVvELEKAVKLRPEDPTINDHMGDAYWRVGRLLEATFQW 550
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
....*....
gi 492824367 551 NHAIAGKPE 559
Cdd:COG3063 83 ERALELDPS 91
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
284-546 |
3.86e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.49 E-value: 3.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 284 AETLYTLGTAINRSGAEAFAKLYLQMSLPLRPDNDATLYQLGDISAKLHEPQKAVEYYgrvpeqspyrrdaemQRALNLA 363
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADY---------------EQALELD 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 364 KNDQSAeaikqlkvllgrdksdmrtylalggvyaqdknfadaakiydaaveqiktparkdwplFYQRGIAYERLQEWDKA 443
Cdd:COG0457 73 PDDAEA---------------------------------------------------------LNNLGLALQALGRYEEA 95
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 444 EPNFRKALELYPDQPQVLNYLGYSWVDRNeNLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLR 523
Cdd:COG0457 96 LEDYDKALELDPDDAEALYNLGLALLELG-RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
250 260
....*....|....*....|...
gi 492824367 524 PEDPTINDHMGDAYWRVGRLLEA 546
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLL 197
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
370-492 |
2.83e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.48 E-value: 2.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 370 EAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEQiktpARKDWPLFYQRGIAYERLQEWDKAEPNFRK 449
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL----DPDNADALLDLAEALLAAGDTEEAEELLER 76
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 492824367 450 ALELYPDQPQVLNYLGYSWVDRNeNLDEALNMIRKAVELRPQD 492
Cdd:COG4235 77 ALALDPDNPEALYLLGLAAFQQG-DYAEAIAAWQKLLALLPAD 118
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
284-487 |
4.89e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.41 E-value: 4.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 284 AETLYTLGTAINRSGAEAFAKLYLQMSLPLRPDNDATLYQLGDISAKLHEPQKAVEYYGRVPEQSPYRRDAEMQRALNLA 363
Cdd:COG0457 42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 364 KNDQSAEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEQIKTPARKDWPLFYQRGIAYERLQEWDKA 443
Cdd:COG0457 122 ELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLL 201
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 492824367 444 EPNFRKALELYPDQPQVLNYLGYSWVDRNENLDEALNMIRKAVE 487
Cdd:COG0457 202 ALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
426-527 |
2.76e-09 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 58.75 E-value: 2.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 426 LFYQRGIAYERLQEWDKAEPNFRKALELYPDQPQVLNYLGYSWVdRNENLDEALNMIRKAVELRPQDGYIVDSLGWAYYQ 505
Cdd:PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY 144
|
90 100
....*....|....*....|..
gi 492824367 506 LGRYNDAVVELEKAVKLRPEDP 527
Cdd:PRK11189 145 GGRYELAQDDLLAFYQDDPNDP 166
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
47-341 |
5.99e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.43 E-value: 5.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 47 AGAYLAGRTAESDDNLSAAVDFYRQAMAFDPNNSQIKQDLMLVLLTEGRFKDALPLAHELQNVTAIERFSRLALAIDAIN 126
Cdd:COG2956 9 LGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 127 RQQYRKVGPLLMFSLQSDMDRL--LINLMNAWVKvgQGNPKEALADVQKMDGPEWYDLFRTYNAALIADLAGRKQEARDY 204
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAeaLRLLAEIYEQ--EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 205 YQQAIDdrrggsAAPDtYERVVMAFAAFKLRQGDRAGAIKTLKDAEELlngrmtitemrekieaghkygrlvktaQDGAA 284
Cdd:COG2956 167 LEKALK------LDPD-CARALLLLAELYLEQGDYEEAIAALERALEQ---------------------------DPDYL 212
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 492824367 285 ETLYTLGTAINRSGAEAFAKLYLQMSLPLRPDNDAtLYQLGDISAKLHEPQKAVEYY 341
Cdd:COG2956 213 PALPRLAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALL 268
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
307-415 |
6.68e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 6.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 307 LQMSLPLRPDNDATLYQLGDISAKLHEPQKAVEYYGRVPEQSPYRRDAEMQRALNLAKNDQSAEAIKQLKVLLGRDKSDM 386
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100
....*....|....*....|....*....
gi 492824367 387 RTYLALGGVYAQDKNFADAAKIYDAAVEQ 415
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
432-527 |
3.44e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.92 E-value: 3.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 432 IAYERLQEWDKAEPNFRKALELYPD---QPQVLNYLGYSWVDRNeNLDEALNMIRKAVELRPQDGYIVDSL---GWAYYQ 505
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALG-DYDEAAEAFEKLLKRYPDSPKAPDALlklGLSYLE 79
|
90 100
....*....|....*....|..
gi 492824367 506 LGRYNDAVVELEKAVKLRPEDP 527
Cdd:COG1729 80 LGDYDKARATLEELIKKYPDSE 101
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
281-415 |
6.30e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.73 E-value: 6.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 281 DGAAETLYTLGTAINRSGAEAFAKLYLQMSLPLRPDNDATLYQLGDISAKLHEPQKAVEYYGRVPEQSPYRRDAEMQRAL 360
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 492824367 361 NLAKNDQSAEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEQ 415
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
387-547 |
1.45e-07 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 52.72 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 387 RTYLALGGVYAQDKNFADAAKIYDAAVEQiktpARKDWPLFYQRGIAYERLQEWDKAEPNFRKALELYPDQPQVLNYLGy 466
Cdd:TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 467 SWVDRNENLDEALNMIRKAVEL----RPQDGYivDSLGWAYYQLGRYNDAVVELEKAVKLRPEDPTINDHMGDAYWRVGR 542
Cdd:TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDplypQPARSL--ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184
|
....*
gi 492824367 543 LLEAT 547
Cdd:TIGR02521 185 YKDAR 189
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
209-587 |
2.39e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 53.83 E-value: 2.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 209 IDDRRGGSAAPdTYERVVMAFAAFKLRQ-----GDRAGAIKTLKDAEELLNGRMTITEMREKIEAGHKYG----RLVKTA 279
Cdd:TIGR00990 223 IDGFRNEQSAQ-AVERLLKKFAESKAKEiletkPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGngqlQLGLKS 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 280 QDGAAETLYTlgtainrSGAEAFAKlylQMSLPLRPDNDATLYQL-GDISAKLHEPQKAVEYYGRVPEQSPYRRDAEMQR 358
Cdd:TIGR00990 302 PESKADESYE-------EAARAFEK---ALDLGKLGEKEAIALNLrGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKR 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 359 ALNLAKNDQSAEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEqiktpARKDWPLFY-QRGIAYERL 437
Cdd:TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID-----LDPDFIFSHiQLGVTQYKE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 438 QEWDKAEPNFRKALELYPDQPQVLNYLGYSWVDRNEnLDEALNMIRKAVELRPQ-DGYIVDSL-----GWAYYQLGR-YN 510
Cdd:TIGR00990 447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-FDEAIEKFDTAIELEKEtKPMYMNVLplinkALALFQWKQdFI 525
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492824367 511 DAVVELEKAVKLRPEDPTINDHMGDAYWRVGRLLEatfqwnhAIAGKPEPEELAKIKEKLKKGLpdipgqSAADATK 587
Cdd:TIGR00990 526 EAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE-------ALKLFERAAELARTEGELVQAI------SYAEATR 589
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
500-541 |
3.88e-07 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 46.70 E-value: 3.88e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 492824367 500 GWAYYQLGRYNDAVVELEKAVKLRPEDPTINDHMGDAYWRVG 541
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
395-490 |
7.39e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.47 E-value: 7.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 395 VYAQDKNFADAAKIYDAAVEQiktpARKDWPLFYQRGIAYERLQEWDKAEpNFRKALELYPDQPQVLNYLGYSWVDRNeN 474
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL----DPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELG-D 74
|
90
....*....|....*.
gi 492824367 475 LDEALNMIRKAVELRP 490
Cdd:COG3063 75 YDEALAYLERALELDP 90
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
148-456 |
1.06e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 47.98 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 148 LLINLMNAWVKVGQGNPKEALADVQKMDGPEWYDLFRTYNAALIADLAGRKQEARDYYQQAIDdrrggsAAPDTYERVVM 227
Cdd:COG3071 16 LLAALLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALE------LAPEAELAVLL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 228 AFAAFKLRQGDRAGAIKTLKDAEELLNGRMTITEMREKI--EAGH------------KYGRLVKTAQDGAAETLYTLGTA 293
Cdd:COG3071 90 TRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAyrQLGDweellellpalrKHKALSAEEAQALERRAYLGLLR 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 294 INRSGAEAFAKLYLQMSLPLRPDNDAtLYQLGDISAKLHEPQKAVEYYGRVPEQSPyrrDAEMQRALNLAKNDQSAEAIK 373
Cdd:COG3071 170 QAARDAEALKALWKALPRAERRDPEL-AAAYARALIALGDHDEAERLLREALKRQW---DPRLVRLYGRLQGGDPAKQLK 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 374 QLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEQikTPARKDWPLFyqrGIAYERLQEWDKAEPNFRKALEL 453
Cdd:COG3071 246 RAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALAL--RPSAEAYAEL---ARLLEQLGDPEEAAEHYRKALAL 320
|
...
gi 492824367 454 YPD 456
Cdd:COG3071 321 ALG 323
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
471-572 |
1.14e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.60 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 471 RNENLDEALNMIRKAVELRPQDGYIVDS---LGWAYYQLGRYNDAVVELEKAVKLRPEDPTIND---HMGDAYWRVGRLL 544
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPLAPDAlywLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYD 84
|
90 100
....*....|....*....|....*...
gi 492824367 545 EATFQWNHAIAGKPEPEELAKIKEKLKK 572
Cdd:COG1729 85 KARATLEELIKKYPDSEAAKEARARLAR 112
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
360-460 |
1.31e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.60 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 360 LNLAKNDQSAEAIKQLKVLLGRDKSDMRT---YLALGGVYAQDKNFADAAKIYDAAVEQIKTPARKDWPLFYQrGIAYER 436
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKL-GLSYLE 79
|
90 100
....*....|....*....|....
gi 492824367 437 LQEWDKAEPNFRKALELYPDQPQV 460
Cdd:COG1729 80 LGDYDKARATLEELIKKYPDSEAA 103
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
396-491 |
1.33e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.60 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 396 YAQDKNFADAAKIYDAAVEQIKTPARKDWPLFYqRGIAYERLQEWDKAEPNFRKALELYPD---QPQVLNYLGYSWVDRN 472
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYW-LGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELG 81
|
90
....*....|....*....
gi 492824367 473 ENlDEALNMIRKAVELRPQ 491
Cdd:COG1729 82 DY-DKARATLEELIKKYPD 99
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
188-437 |
4.42e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 46.52 E-value: 4.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 188 AALIADLAGRKQEARDYYQQAIDdrrggsAAPDTYE-RVVMAFAAfkLRQGDRAGAIKTLKDAEELlngrmtitemreki 266
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALA------LNPDNAEaLFNLGNLL--LALGRLEEALAALRRALAL-------------- 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 267 eaghkygrlvktaQDGAAETLYTLGTAINRSGAEAFAKLYLQMSLPLRPDNDATLYQLGDISAKLHEPQKAVEYYGRVPE 346
Cdd:COG3914 142 -------------NPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 347 QSPYRRDAEMQRALNLakndQSAEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAA---VEQIKTPARKD 423
Cdd:COG3914 209 LDPDNADAHSNLLFAL----RQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALArawAQLVAAAAAPE 284
|
250
....*....|....
gi 492824367 424 WPLFYQRGIAYERL 437
Cdd:COG3914 285 LPPPPNPRDPDRKL 298
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
486-559 |
4.60e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.38 E-value: 4.60e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492824367 486 VELRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLRPEDPTINDHMGDAYWRVGRLLEATFQWNHAIAGKPE 559
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74
|
|
| SirB1 |
COG2912 |
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ... |
471-527 |
9.49e-05 |
|
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];
Pssm-ID: 442156 [Multi-domain] Cd Length: 264 Bit Score: 44.43 E-value: 9.49e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 492824367 471 RNENLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLRPEDP 527
Cdd:COG2912 191 REKDWERALRVVERLLLLDPDDPYEIRDRGLLYAQLGCYQAALEDLEYFLEQCPEDP 247
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
359-490 |
1.26e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 44.80 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 359 ALNLAKNDQSAEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEQiktpaRKDW-----PLFYQrgiA 433
Cdd:PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPEYlsevlPKLME---C 258
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 492824367 434 YERLQEWDKAEPNFRKALELYPdQPQVLNYLgYSWVDRNENLDEALNMIRKAVELRP 490
Cdd:PRK11788 259 YQALGDEAEGLEFLRRALEEYP-GADLLLAL-AQLLEEQEGPEAAQALLREQLRRHP 313
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
299-455 |
1.62e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 42.64 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 299 AEAFAKLYLQMSLPLRPDNDATLYQLGDISAKLHEPQKAVEYYGRVPEQSPYRRDAEMQRALNLAKNDQSAEAIKQLKVL 378
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492824367 379 LGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEQiktpARKDWPLFYQRGIAYERLQEWDKAEPNFRKALELYP 455
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL----SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
427-456 |
1.89e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.94 E-value: 1.89e-04
10 20 30
....*....|....*....|....*....|
gi 492824367 427 FYQRGIAYERLQEWDKAEPNFRKALELYPD 456
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
53-249 |
6.11e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.02 E-value: 6.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 53 GRTAESDDNLSAAVDFYRQAMAFDPNNSQIKQDLMLVLLTEGRFKDALPLAHELQNVTAIERFSRLALAIDAINRQQYRK 132
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 133 VGPLLMFSLQSDMD--RLLINLMNAWVKvgQGNPKEALADVQKMDGPEWYDLFRTYNAALIADLAGRKQEARDYYQQAID 210
Cdd:COG2956 163 AIEALEKALKLDPDcaRALLLLAELYLE--QGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE 240
|
170 180 190
....*....|....*....|....*....|....*....
gi 492824367 211 DrrggsaapDTYERVVMAFAAFKLRQGDRAGAIKTLKDA 249
Cdd:COG2956 241 L--------DPSDDLLLALADLLERKEGLEAALALLERQ 271
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
427-456 |
7.00e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 7.00e-04
10 20 30
....*....|....*....|....*....|
gi 492824367 427 FYQRGIAYERLQEWDKAEPNFRKALELYPD 456
Cdd:smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
362-456 |
9.73e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 9.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 362 LAKNDQSAEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKiYDAAVEQiktpARKDWPLFYQRGIAYERLQEWD 441
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL----DPNNAEALLNLAELLLELGDYD 76
|
90
....*....|....*
gi 492824367 442 KAEPNFRKALELYPD 456
Cdd:COG3063 77 EALAYLERALELDPS 91
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
433-521 |
1.11e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 41.02 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 433 AYERLQEWDKAEPNFRKALE-LYPDQPQVLNYLGYSWVDrNENLDEALN----MIRKAVELRPQDGYIVdsLGWAYYQLG 507
Cdd:COG4700 98 ALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFE-LGRYAEALEtlekLIAKNPDFKSSDAHLL--YARALEALG 174
|
90
....*....|....
gi 492824367 508 RYNDAVVELEKAVK 521
Cdd:COG4700 175 DLEAAEAELEALAR 188
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
461-559 |
1.14e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 461 LNYLGYSWVDRNENLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLRPEDPTINDHMGDAYWRV 540
Cdd:COG5010 22 TLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS 101
|
90
....*....|....*....
gi 492824367 541 GRLLEATFQWNHAIAGKPE 559
Cdd:COG5010 102 GDKDEAKEYYEKALALSPD 120
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
362-527 |
1.16e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.99 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 362 LAKNDQSAeAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEQiKTPARKDWPLFYQ------------ 429
Cdd:TIGR02917 33 LQKNKYKA-AIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSL-GYPKNQVLPLLARayllqgkfqqvl 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 430 --------------------RGIAYERLQEWDKAEPNFRKALELYPDQPQVLNYLGYSWVDRNeNLDEALNMIRKAVELR 489
Cdd:TIGR02917 111 delpgktllddegaaellalRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN-RFDEARALIDEVLTAD 189
|
170 180 190
....*....|....*....|....*....|....*...
gi 492824367 490 PQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLRPEDP 527
Cdd:TIGR02917 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNI 227
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
61-459 |
1.45e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.99 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 61 NLSAAVDFYRQAMAFDPNNSQIKQDLMLVLLTEGRFKDALP-----LAHELQNVTAIERFSRL--------ALA-IDAIN 126
Cdd:PRK11447 366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERyyqqaLRMDPGNTNAVRGLANLyrqqspekALAfIASLS 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 127 RQQYRKVGPLLMfSLQSDM-----DRLLinlmnawvkvGQGN---PKEALADVQKMDgPEwyDLFRTYNAALIADLAGRK 198
Cdd:PRK11447 446 ASQRRSIDDIER-SLQNDRlaqqaEALE----------NQGKwaqAAELQRQRLALD-PG--SVWLTYRLAQDLRQAGQR 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 199 QEArDYYQQAIDDRRGGSaaPDTyervVMAFAAFkLRQGDRAGA----IKTLKDAEELLNgrmtITEMREKIEAGHkygr 274
Cdd:PRK11447 512 SQA-DALMRRLAQQKPND--PEQ----VYAYGLY-LSGSDRDRAalahLNTLPRAQWNSN----IQELAQRLQSDQ---- 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 275 LVKTAQdgaaetlytlgtAINRSGAEAFAKLYLQMslplRPDNDATLYQLGDISAKLHEPQKAVEYYGRVPEQSPYRRDA 354
Cdd:PRK11447 576 VLETAN------------RLRDSGKEAEAEALLRQ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADA 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 355 EMQRALNLAKNDQSAEAIKQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIYDAAVEQIKT-PARKDWPLFYQRGIA 433
Cdd:PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSqPPSMESALVLRDAAR 719
|
410 420 430
....*....|....*....|....*....|
gi 492824367 434 YERLQ-EWDKAEPNFRKAL---ELYPDQPQ 459
Cdd:PRK11447 720 FEAQTgQPQQALETYKDAMvasGITPTRPQ 749
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
426-456 |
1.58e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.35 E-value: 1.58e-03
10 20 30
....*....|....*....|....*....|.
gi 492824367 426 LFYQRGIAYERLQEWDKAEPNFRKALELYPD 456
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
50-173 |
1.76e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.02 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 50 YLAGRTAESDDNLSAAVDFYRQAMAFDPNNSQIKQDLMLVLLTEGRFKDALPLAHELQNVTAIERFSRLALAIDAINRQQ 129
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 492824367 130 YRKVGPLLMFSLQSDMDRLLINLMNAWVKVGQGNPKEALADVQK 173
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
502-559 |
2.04e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 2.04e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 492824367 502 AYYQLGRYNDAVVELEKAVKLRPEDPTINDHMGDAYWRVGRLLEAtFQWNHAIAGKPE 559
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPN 57
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
433-555 |
2.05e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 40.66 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 433 AYERLQEWDKAEPNFRKALELYPDQPqvlnyLGYSWVD-RNENLDEALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYND 511
Cdd:COG3071 202 ALIALGDHDEAERLLREALKRQWDPR-----LVRLYGRlQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGK 276
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 492824367 512 AVVELEKAVKLRPeDPTINDHMGDAYWRVGRLLEATFQWNHAIA 555
Cdd:COG3071 277 AREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALA 319
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
284-452 |
2.20e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.90 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 284 AETLYTLGTAINRSGAEAFAKLYLQMSLPLRPDNDATLYQLGDISAKLHEPQKAVEYYGRVPEQSPYRRDAEMQRALNLA 363
Cdd:COG4785 73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 364 KNDQSAEAIKQLKVLLGRDKSDMRTYLALggvyaqdkNFADAAKIYDAAVEQIKtparKDWPlfyqrgIAYERLQEWDKA 443
Cdd:COG4785 153 YLGRYELAIADLEKALELDPNDPERALWL--------YLAERKLDPEKALALLL----EDWA------TAYLLQGDTEEA 214
|
....*....
gi 492824367 444 EPNFRKALE 452
Cdd:COG4785 215 RELFKLALA 223
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
428-491 |
2.47e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.98 E-value: 2.47e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492824367 428 YQRGIAYERLQEWDKAEPNFRKALELY-----PDQPQVLN-YLGYSWV-DRNENLDEALNMIRKAVELRPQ 491
Cdd:pfam13424 7 NNLAAVLRRLGRYDEALELLEKALEIArrllgPDHPLTATtLLNLGRLyLELGRYEEALELLERALALAEK 77
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
50-253 |
2.90e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.99 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 50 YLAGRTAESDDNLSAAVDFYRQAMAFDPNNSQIKQDLMLVLLTEGRFKDALPLAHElqnvtAIERFSRLALAIDAI---- 125
Cdd:COG0457 12 NNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ-----ALELDPDDAEALNNLglal 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 126 -NRQQYRKVGPLLMFSLQSDMDRLLINLMNAWVKVGQGNPKEALADVQKMDGPEWYDLFRTYNAALIADLAGRKQEARDY 204
Cdd:COG0457 87 qALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 492824367 205 YQQAIDDRRGGSAAPDTYERVVMAFAAFKLRQGDRAGAIKTLKDAEELL 253
Cdd:COG0457 167 LEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
284-385 |
3.20e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.06 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 284 AETLYTLGTAINRSGAEAFAKLYLQMSLPLRPDNDATLYQLGDISAKLHEPQKAVEYYGRVPEQSPYRRDAEMQRALNLA 363
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90 100
....*....|....*....|..
gi 492824367 364 KNDQSAEAIKQLKVLLGRDKSD 385
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLPAD 118
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
337-529 |
3.45e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 40.45 E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 337 AVEYYgRVPEQSPYRRDaemqRALN-LAKNDQSAEAIKQLKVLLGR----DKSDMRTYlALGGVYAQDKNFADAAKiyDA 411
Cdd:PRK11447 149 AVEYW-RLVAKLPAQRP----EAINqLQRLNADYPGNTGLRNTLALllfsSGRRDEGF-AVLEQMAKSPAGRDAAA--QL 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 412 AVEQIKTPARKD-----WPLFYQR-------GIAYERLQEWDK--AEPNFRKALElypdqpqvlnylGYSWVDRNENlDE 477
Cdd:PRK11447 221 WYGQIKDMPVSDasvaaLQKYLQVfsdgdsvAAARSQLAEQQKqlADPAFRARAQ------------GLAAVDSGQG-GK 287
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 492824367 478 ALNMIRKAVELRPQDGYIVDSLGWAYYQLGRYNDAVVELEKAVKLRPEDPTI 529
Cdd:PRK11447 288 AIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
46-158 |
3.62e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 40.36 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 46 FAGAYLA-GRTAESDDNLSAAVDFYRQAMAFDPNNSQIKQDLMLVLLTEGRFKDALP------------------LAHEL 106
Cdd:COG3914 145 FAEAYLNlGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAayrraleldpdnadahsnLLFAL 224
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 492824367 107 QNVTAIERFSRLALAIDAInRQQYRKVGPLLMFSLQSDMDRLLINLMNAWVK 158
Cdd:COG3914 225 RQACDWEVYDRFEELLAAL-ARGPSELSPFALLYLPDDDPAELLALARAWAQ 275
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
498-526 |
3.80e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 3.80e-03
10 20
....*....|....*....|....*....
gi 492824367 498 SLGWAYYQLGRYNDAVVELEKAVKLRPED 526
Cdd:smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
330-414 |
4.82e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.69 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492824367 330 KLHEPQKAVEYYGRVPEQSPYRRDAEMQRALNLAKNDQSAEAIkQLKVLLGRDKSDMRTYLALGGVYAQDKNFADAAKIY 409
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
....*
gi 492824367 410 DAAVE 414
Cdd:COG3063 83 ERALE 87
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
499-526 |
5.00e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.09 E-value: 5.00e-03
10 20
....*....|....*....|....*...
gi 492824367 499 LGWAYYQLGRYNDAVVELEKAVKLRPED 526
Cdd:pfam00515 7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
441-494 |
7.79e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 38.76 E-value: 7.79e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 492824367 441 DKAEPNFRKALELYPDQPQVLNYLGYSWVDrNENLDEALNMIRKAVELRPQDGY 494
Cdd:cd24142 17 ELALKFLQRALELEPNNVEALELLGEILLE-LGDVEEAREVLLRAIELDPDGGY 69
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
499-525 |
9.94e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.04 E-value: 9.94e-03
10 20
....*....|....*....|....*..
gi 492824367 499 LGWAYYQLGRYNDAVVELEKAVKLRPE 525
Cdd:pfam07719 7 LGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| |
