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Conserved domains on  [gi|493488615|ref|WP_006443367|]
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ATP synthase F1 subunit epsilon [[Clostridium] hylemonae]

Protein Classification

FoF1 ATP synthase subunit delta/epsilon( domain architecture ID 10187353)

The FoF1 ATP synthase subunit delta/epsilon is a component of the F1-complex catalytic core of the F-type ATPase, which synthesizes ATP from ADP in the presence of a proton gradient across the membrane

Gene Ontology:  GO:0015986|GO:0046933|GO:0045261
PubMed:  12745923|15282184
SCOP:  4004011

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 4-125 5.56e-48

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


:

Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 150.35  E-value: 5.56e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   4 FFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAVVSKGFAEIINNRVSVLVNAA 83
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILADEA 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 493488615  84 ERPEDIDVLRAREAKERAQERLRQKQSIQEYYLSQASLARAM 125
Cdd:cd12152   81 ERPEDIDVERAEEALERAEERLAQAKDEREKARAEAALERAL 122
 
Name Accession Description Interval E-value
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 4-125 5.56e-48

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 150.35  E-value: 5.56e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   4 FFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAVVSKGFAEIINNRVSVLVNAA 83
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILADEA 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 493488615  84 ERPEDIDVLRAREAKERAQERLRQKQSIQEYYLSQASLARAM 125
Cdd:cd12152   81 ERPEDIDVERAEEALERAEERLAQAKDEREKARAEAALERAL 122
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 4-132 7.73e-45

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 142.64  E-value: 7.73e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   4 FFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAVVSKGFAEIINNRVSVLVNAA 83
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILADTA 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 493488615  84 ERPEDIDVLRAREAKERAQERLRQKQSIQEYYLSQASLARAMTRLRASK 132
Cdd:COG0355   81 ERAEDIDVERAEEAKERAEERLEEAKDDIDYARAEAALARALARLRAAE 129
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-132 1.11e-39

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 129.88  E-value: 1.11e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   1 MNTFFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAVVSKGFAEIINNRVSVLV 80
Cdd:PRK00571   1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 493488615  81 NAAERPEDIDVLRAREAKERAQERLRQKQSIQEYYLSQASLARAMTRLRASK 132
Cdd:PRK00571  81 DSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAE 132
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 3-130 6.66e-30

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 104.64  E-value: 6.66e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615    3 TFFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAVVSKGFAEIINNRVSVLVNA 82
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 493488615   83 AERPEDIDVLRAREAKERAQERLRQKQSIQEYYLSQASLARAMTRLRA 130
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEA 128
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 4-83 1.05e-24

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 89.80  E-value: 1.05e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615    4 FFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAVVSKGFAEIINNRVSVLVNAA 83
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILADSA 80
 
Name Accession Description Interval E-value
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 4-125 5.56e-48

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 150.35  E-value: 5.56e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   4 FFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAVVSKGFAEIINNRVSVLVNAA 83
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILADEA 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 493488615  84 ERPEDIDVLRAREAKERAQERLRQKQSIQEYYLSQASLARAM 125
Cdd:cd12152   81 ERPEDIDVERAEEALERAEERLAQAKDEREKARAEAALERAL 122
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 4-132 7.73e-45

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 142.64  E-value: 7.73e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   4 FFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAVVSKGFAEIINNRVSVLVNAA 83
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILADTA 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 493488615  84 ERPEDIDVLRAREAKERAQERLRQKQSIQEYYLSQASLARAMTRLRASK 132
Cdd:COG0355   81 ERAEDIDVERAEEAKERAEERLEEAKDDIDYARAEAALARALARLRAAE 129
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-132 1.11e-39

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 129.88  E-value: 1.11e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   1 MNTFFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAVVSKGFAEIINNRVSVLV 80
Cdd:PRK00571   1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 493488615  81 NAAERPEDIDVLRAREAKERAQERLRQKQSIQEYYLSQASLARAMTRLRASK 132
Cdd:PRK00571  81 DSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAE 132
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 1-131 7.04e-32

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 110.05  E-value: 7.04e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   1 MNTFFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQtKEGEWNTAVVSKGFAEIINNRVSVLV 80
Cdd:PRK13446   2 AKKLKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYK-KGGKTHYVAVNGGFAEVSNNKVTVLA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 493488615  81 NAAERPEDIDVLRAREAKERAQERLRQKQSIQEYYLSQASLARAMTRLRAS 131
Cdd:PRK13446  81 ETAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALERALIRLQVA 131
atpE CHL00063
ATP synthase CF1 epsilon subunit
 3-136 2.82e-31

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 108.41  E-value: 2.82e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   3 TFFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKeGEWNTAVVSKGFAEIINNRVSVLVNA 82
Cdd:CHL00063   2 TLNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLN-DQWLTMALMGGFARIGNNEITILVND 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 493488615  83 AERPEDIDVLRAREAKERAQERLRQKQSIQEYYLSQASLARAMTRLRASKSGKK 136
Cdd:CHL00063  81 AEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARARVEAINAISS 134
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 1-129 1.89e-30

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 106.39  E-value: 1.89e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   1 MNTFFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAVVSKGFAEIINNRVSVLV 80
Cdd:PRK13450   1 ANNIKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVENNEVYILC 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 493488615  81 NAAERPEDIDVLRAREAKERAQERLRQKQSIQEYYlSQASLARAMTRLR 129
Cdd:PRK13450  81 DASEWPEEIDIKRAENAKKRAEERLRKKDEIDVKR-AELALFRAIARIK 128
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 3-130 6.66e-30

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 104.64  E-value: 6.66e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615    3 TFFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAVVSKGFAEIINNRVSVLVNA 82
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 493488615   83 AERPEDIDVLRAREAKERAQERLRQKQSIQEYYLSQASLARAMTRLRA 130
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEA 128
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 4-83 1.05e-24

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 89.80  E-value: 1.05e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615    4 FFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAVVSKGFAEIINNRVSVLVNAA 83
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILADSA 80
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 6-132 1.92e-24

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 91.21  E-value: 1.92e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   6 LKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFqTKEGEWNTAVVSKGFAEIINNRVSVLVNAAER 85
Cdd:PRK14735   5 LEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDI-VKNGVRTPFAISGGFMEVLPHRVTILADTAER 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 493488615  86 PEDIDVLRAREAKERAQERLRQKQSIQEYYLSQASLARAMTRLRASK 132
Cdd:PRK14735  84 ADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRAMVRLRVAQ 130
ATP-synt_DE pfam00401
ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). ...
 87-130 5.50e-15

ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. This subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 459802  Cd Length: 45  Bit Score: 64.32  E-value: 5.50e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 493488615   87 EDIDVLRAREAKERAQERLRQK-QSIQEYYLSQASLARAMTRLRA 130
Cdd:pfam00401   1 EDIDVARAEEAKERAEERLAQAkQDDIDYARAQAALARALARLQA 45
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 6-102 3.11e-12

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 59.51  E-value: 3.11e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   6 LKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAvVSKGFAEIINNRVSVLVNAAER 85
Cdd:PRK13444   8 VSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKGEKLKRIS-VEGGFCEVKDNQISILTDHGAL 86

                         90
                 ....*....|....*..
gi 493488615  86 PEDIDVLRAREAKERAQ 102
Cdd:PRK13444  87 KEDIDHEHEKKLLAEAE 103
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 8-87 4.46e-10

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 52.71  E-value: 4.46e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   8 IICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAVVSKGFAEIINNRVSVLVNAAERPE 87
Cdd:PRK13442  10 IVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSNKLTVLAERAELVA 89
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 1-133 1.05e-08

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 50.16  E-value: 1.05e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   1 MNTFFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFqTKEGEWNTAVVSKGFAEIINNRVSVLV 80
Cdd:PRK13448   1 MATFHFDLVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTV-TAGGNQQKIVVLGGLAEVSEKGLTVLA 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 493488615  81 NAAERPEDIDVLRAREAKERAQERLRQKQSiqeyylsqASLARAMTRLRASKS 133
Cdd:PRK13448  80 DVATSVADLDLAQFAATIAEMEAQLAGKVG--------DELDRAIERLDHFKS 124
atpC PRK13452
F0F1 ATP synthase subunit epsilon; Provisional
 16-135 3.43e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 106409 [Multi-domain]  Cd Length: 145  Bit Score: 43.97  E-value: 3.43e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615  16 FEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQtKEGEWNTAVVSKGFAEIINNRVSVLVNAAERPEDIDVLRAR 95
Cdd:PRK13452  18 FKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVR-KDQHTDVLYVSGGIVEVTPTRVTIMVDDMERAENLNQAEAE 96

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 493488615  96 EAKERAQERLRQKQSIQ-EYYLSQASLARAMTRLRASKSGK 135
Cdd:PRK13452  97 KARARAKEVLKNPDASKlDIEAANKRLKEADARLKALNSSN 137
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 1-113 5.74e-06

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 42.55  E-value: 5.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   1 MN-TFFLKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKE--GEWNTAVVSKGFAEIINNRVS 77
Cdd:PRK01474   1 MNeTILVKIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDmhKSENTYLISGGVTEVTGNYIN 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 493488615  78 VLVNAAerpedIDVLRAREAkERAQERLRQKQSIQE 113
Cdd:PRK01474  81 IATETA-----INVTNLSEA-EIATKLLDLQKTLSD 110
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 6-106 1.08e-03

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 36.30  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615   6 LKIICSDKVFFEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTaVVSKGFAEIINNRVSVLVNAAER 85
Cdd:PRK13451   3 VKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEY-KVADGFLHCDGKNVIIITEEAGR 81

                         90       100
                 ....*....|....*....|.
gi 493488615  86 PEDIDVLRAREAKERAqERLR 106
Cdd:PRK13451  82 EEEISPHRYLGARERV-ERVR 101
atpC PRK13449
ATP synthase F1 subunit epsilon;
16-84 2.43e-03

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 35.13  E-value: 2.43e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493488615  16 FEGRCQNVILPTPDGQKGVLAHHENMVVAVEIGELRFQTKEGEWNTAV-VSKGFAEIINNRVSVLVNAAE 84
Cdd:PRK13449  16 RSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEVFhVQGGFAEVNEKGLTILAEHAV 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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