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Conserved domains on  [gi|493669552|ref|WP_006619894|]
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MULTISPECIES: sulfate ABC transporter permease subunit CysW [Oscillatoriales]

Protein Classification

sulfate ABC transporter permease( domain architecture ID 10790587)

sulfate ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter that is involved in the transport of sulfate

Gene Ontology:  GO:0015419|GO:0043190|GO:0140359|GO:0042626|GO:0016020
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 30-285 1.06e-137

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 443356  Cd Length: 281  Bit Score: 389.86  E-value: 1.06e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  30 VALVLAVILFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGR 109
Cdd:COG4208   19 WLLIGLALLFLALFLVLPLAAVFAEAFSKGWGAYLAALTDPDALSAIRLTLLVAAIAVPLNLVFGVAAAWAITRFEFRGK 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 110 TLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEA 189
Cdd:COG4208   99 RLLITLIDLPFSVSPVVAGLIYVLLFGAQGWFGPWLEAHDIKIIFAVPGIVLATIFVTFPFVARELIPLMQEQGTDEEEA 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 190 AKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNIIGKTQTLPLFVEEMHVQYQTTASYSAAVVLG 269
Cdd:COG4208  179 ALTLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILYNEYNFVAAFAVASLLA 258

                        250
                 ....*....|....*.
gi 493669552 270 SLSFVTLVFKKLLEAK 285
Cdd:COG4208  259 LLALVTLVLKTLLEWR 274
 
Name Accession Description Interval E-value
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 30-285 1.06e-137

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443356  Cd Length: 281  Bit Score: 389.86  E-value: 1.06e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  30 VALVLAVILFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGR 109
Cdd:COG4208   19 WLLIGLALLFLALFLVLPLAAVFAEAFSKGWGAYLAALTDPDALSAIRLTLLVAAIAVPLNLVFGVAAAWAITRFEFRGK 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 110 TLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEA 189
Cdd:COG4208   99 RLLITLIDLPFSVSPVVAGLIYVLLFGAQGWFGPWLEAHDIKIIFAVPGIVLATIFVTFPFVARELIPLMQEQGTDEEEA 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 190 AKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNIIGKTQTLPLFVEEMHVQYQTTASYSAAVVLG 269
Cdd:COG4208  179 ALTLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILYNEYNFVAAFAVASLLA 258

                        250
                 ....*....|....*.
gi 493669552 270 SLSFVTLVFKKLLEAK 285
Cdd:COG4208  259 LLALVTLVLKTLLEWR 274
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 32-287 2.96e-102

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 299.30  E-value: 2.96e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552   32 LVLAVILFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRTL 111
Cdd:TIGR02140   5 LISLALGLLFLLLLLPLALIFQEAFEKGFGVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  112 LLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAAK 191
Cdd:TIGR02140  85 LLTIIDLPFSVSPVVAGLIFVLLYGSQGWLGPWLEDLDIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEAAL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  192 TMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNIIGKTQTLPLFVEEMHVQYQTTASYSAAVVLGSL 271
Cdd:TIGR02140 165 TLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQSYAAFAAASLLALL 244

                         250
                  ....*....|....*.
gi 493669552  272 SFVTLVFKKLLEAKKT 287
Cdd:TIGR02140 245 ALVTLVLKAILERRQG 260
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
31-283 1.44e-78

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 239.65  E-value: 1.44e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  31 ALVLAVILFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRT 110
Cdd:PRK11602  21 FLIGIGMLVSAFILVVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQ 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 111 LLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAA 190
Cdd:PRK11602 101 LLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 191 KTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNIIGKTQTLPLFVEEMHVQYQTTASYSAAVVLGS 270
Cdd:PRK11602 181 ILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTL 260

                        250
                 ....*....|...
gi 493669552 271 LSFVTLVFKKLLE 283
Cdd:PRK11602 261 MAIITLFLKSMLQ 273
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 79-274 3.12e-20

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 85.79  E-value: 3.12e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  79 SVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGaalqsanIRILFAFPG 158
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG-------ILPGLGLPA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 159 MVLASAFVcMPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNI 238
Cdd:cd06261   77 LILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE 155

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 493669552 239 IGKTQTLPLFVEEmhVQYQTTASYSAAVVLGSLSFV 274
Cdd:cd06261  156 APGPGTGLLLIFA--ILFPGDLGVAAAVALILLLLS 189
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 79-245 5.09e-12

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 63.33  E-value: 5.09e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  79 SVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAalqsanIRILFAFPG 158
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGF------LGLLYTPTA 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 159 MVLASAFVCMPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVtLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNI 238
Cdd:NF038017  75 MIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGGNI 153


                 ....*..
gi 493669552 239 IGKTQTL 245
Cdd:NF038017 154 RGYTRVL 160
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 90-288 2.72e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 52.69  E-value: 2.72e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552   90 SVIFGIVTALaiaRHQFPGRTLLLSIIDLPFSIsPVVVGLMLVLLYGRQGWFGaalqsanirilFAFPGMVLASAFVCMP 169
Cdd:pfam00528   1 GIPLGIIAAL---RRGRRLDRLLRPLIDLLQAL-PSFVLAILLVVIAILSILG-----------HGILPAIILALLGWAG 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  170 FVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVsGNIIGKTQTLPLFV 249
Cdd:pfam00528  66 YARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL-GSWPGLGLLLIEAI 144

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 493669552  250 EEMHVQYQTTASYSAAVVLGSLSFVTLVFKKLLEAKKTK 288
Cdd:pfam00528 145 LGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
 
Name Accession Description Interval E-value
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 30-285 1.06e-137

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443356  Cd Length: 281  Bit Score: 389.86  E-value: 1.06e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  30 VALVLAVILFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGR 109
Cdd:COG4208   19 WLLIGLALLFLALFLVLPLAAVFAEAFSKGWGAYLAALTDPDALSAIRLTLLVAAIAVPLNLVFGVAAAWAITRFEFRGK 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 110 TLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEA 189
Cdd:COG4208   99 RLLITLIDLPFSVSPVVAGLIYVLLFGAQGWFGPWLEAHDIKIIFAVPGIVLATIFVTFPFVARELIPLMQEQGTDEEEA 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 190 AKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNIIGKTQTLPLFVEEMHVQYQTTASYSAAVVLG 269
Cdd:COG4208  179 ALTLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILYNEYNFVAAFAVASLLA 258

                        250
                 ....*....|....*.
gi 493669552 270 SLSFVTLVFKKLLEAK 285
Cdd:COG4208  259 LLALVTLVLKTLLEWR 274
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 32-287 2.96e-102

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 299.30  E-value: 2.96e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552   32 LVLAVILFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRTL 111
Cdd:TIGR02140   5 LISLALGLLFLLLLLPLALIFQEAFEKGFGVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  112 LLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAAK 191
Cdd:TIGR02140  85 LLTIIDLPFSVSPVVAGLIFVLLYGSQGWLGPWLEDLDIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEAAL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  192 TMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNIIGKTQTLPLFVEEMHVQYQTTASYSAAVVLGSL 271
Cdd:TIGR02140 165 TLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQSYAAFAAASLLALL 244

                         250
                  ....*....|....*.
gi 493669552  272 SFVTLVFKKLLEAKKT 287
Cdd:TIGR02140 245 ALVTLVLKAILERRQG 260
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 37-285 2.91e-99

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 291.95  E-value: 2.91e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552   37 ILFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLLLSII 116
Cdd:TIGR00969  23 LLYVFLILILPVAALFVQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALI 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  117 DLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAAKTMGAN 196
Cdd:TIGR00969 103 DLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGAS 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  197 DWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNIIGKTQTLPLFVEEMHVQYQTTASYSAAVVLGSLSFVTL 276
Cdd:TIGR00969 183 GWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGNIPGKTLTLPLLIEERLEQYDYPGAYVIAAVLLLVSLVTL 262


                  ....*....
gi 493669552  277 VFKKLLEAK 285
Cdd:TIGR00969 263 FLINALQAR 271
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
31-283 1.44e-78

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 239.65  E-value: 1.44e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  31 ALVLAVILFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRT 110
Cdd:PRK11602  21 FLIGIGMLVSAFILVVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQ 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 111 LLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAA 190
Cdd:PRK11602 101 LLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 191 KTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNIIGKTQTLPLFVEEMHVQYQTTASYSAAVVLGS 270
Cdd:PRK11602 181 ILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTL 260

                        250
                 ....*....|...
gi 493669552 271 LSFVTLVFKKLLE 283
Cdd:PRK11602 261 MAIITLFLKSMLQ 273
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 32-288 8.37e-69

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 214.23  E-value: 8.37e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  32 LVLAVILFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRTL 111
Cdd:COG0555   12 TLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 112 LLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAAK 191
Cdd:COG0555   92 VDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAA 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 192 TMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNIIGKTQTLPLFVEEMHVQYQTTASYSAAVVLGSL 271
Cdd:COG0555  172 TLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGATAIALVLLLI 251

                        250
                 ....*....|....*..
gi 493669552 272 SFVTLVFKKLLEAKKTK 288
Cdd:COG0555  252 SFLLLLLINLLQRRSRR 268
cysT CHL00187
sulfate transport protein; Provisional
 32-256 1.87e-56

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 181.75  E-value: 1.87e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  32 LVLAVILFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRTL 111
Cdd:CHL00187  13 IYIISLSYIIFLLVLPILALLIKASQQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRL 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 112 LLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAAK 191
Cdd:CHL00187  93 LDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAW 172

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493669552 192 TMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNIIGKTQTLPLFVEEMHVQY 256
Cdd:CHL00187 173 SLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSNIPFKDLVASVLIFQSLEQY 237
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 25-284 1.64e-52

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 172.51  E-value: 1.64e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552   25 VSNFEVALVLAViLFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARH 104
Cdd:TIGR02139   2 LPGFGLSLGVTL-TYLSLIVLLPLAALFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  105 QFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGT 184
Cdd:TIGR02139  81 RFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  185 EQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNIIGKTQTLPLFVEEMHVQYQTTASYSA 264
Cdd:TIGR02139 161 ELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNLPMKTEIAPLLIFQKLEQYDYAGATAI 240

                         250       260
                  ....*....|....*....|
gi 493669552  265 AVVLGSLSFVTLVFKKLLEA 284
Cdd:TIGR02139 241 ASVMLIISFVILLFINLLQW 260
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 68-288 7.14e-50

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 164.07  E-value: 7.14e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  68 TSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQS 147
Cdd:COG4149    1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 148 A-NIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMG 226
Cdd:COG4149   81 LfGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493669552 227 EFGAVAVVSGNIIGKTQTLPL----FVEEMhvQYQTTASYSAavVLGSLSFVTLVFKKLLEAKKTK 288
Cdd:COG4149  161 EFGATLMFAGNIPGKTQTLPLaiydAVEAG--DYAAAHALSL--ILLAISFVVLLLLNLLNRRRRR 222
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
37-271 4.69e-46

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 156.07  E-value: 4.69e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  37 ILFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLLLSII 116
Cdd:PRK10971  21 LLFVCLILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALM 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 117 DLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAAKTMGAN 196
Cdd:PRK10971 101 DLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGAT 180

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493669552 197 DWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNIIGKTQ--TLPLFVEEMHVQYQTTASYSAAVVLGSL 271
Cdd:PRK10971 181 RWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEvtSLMIFVRLQEFDYPAASAIASVILAASL 257
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 78-285 6.96e-43

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 145.85  E-value: 6.96e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552   78 LSVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFAFP 157
Cdd:TIGR02141   2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGISLVFTFT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  158 GMVLASAFVCMPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGN 237
Cdd:TIGR02141  82 GAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAGN 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 493669552  238 IIGKTQTLPLFVeEMHVQYQTTASYSAAVVLGSLSFVTLVFKKLLEAK 285
Cdd:TIGR02141 162 IPGETQTIPLAI-YDAVESDYELAHQLSLVLLAISLIVLLLVELLNKR 208
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
23-286 2.30e-37

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 138.76  E-value: 2.30e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  23 TQVSNFEVALVLAVILFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIA 102
Cdd:COG1178    3 TRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 103 RHQFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSA---NIRILFAFPGMVLASAFVCMPFVAREVLPAL 179
Cdd:COG1178   83 RTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALfglEPPDIYGLGGIILVLVLFNYPYVYLLLRAAL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 180 EEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNIigktQTLPLFV-EEMHVQYQT 258
Cdd:COG1178  163 RSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGY----TTLTTAIyQAWLGDFDL 238

                        250       260
                 ....*....|....*....|....*...
gi 493669552 259 TASYSAAVVLGSLSFVTLVFKKLLEAKK 286
Cdd:COG1178  239 GAAAALALVLLLLVLLLLLLERRLRRRR 266
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 55-247 5.02e-37

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 130.98  E-value: 5.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552   55 AFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLLLSIIDLPFSISPVVVGLMLVLL 134
Cdd:TIGR01581   2 IRRLGGSHILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  135 YGRQGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLL 214
Cdd:TIGR01581  82 FGRNGLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLL 161

                         170       180       190
                  ....*....|....*....|....*....|...
gi 493669552  215 YGILLTNARSMGEFGAVAVVSGNIIGKTQTLPL 247
Cdd:TIGR01581 162 AGLVLAWARALGEFGATLMFAGSIQGKTRTLPL 194
modB PRK09421
molybdate ABC transporter permease subunit;
69-247 2.59e-33

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 121.57  E-value: 2.59e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  69 SPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSa 148
Cdd:PRK09421   4 SDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYE- 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 149 NIRILFAF--PGMVLASAFVCMPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMG 226
Cdd:PRK09421  83 WFGISFAFswRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLG 162

                        170       180
                 ....*....|....*....|.
gi 493669552 227 EFGAVAVVSGNIIGKTQTLPL 247
Cdd:PRK09421 163 EFGATITFVSNIPGETQTIPS 183
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 31-278 9.57e-33

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 120.99  E-value: 9.57e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  31 ALVLAVILFVGLVLFVPAANIFVGAFRNGWSG-----------FARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTAL 99
Cdd:COG1177    7 LLLRLFLALVLLFLYLPILVLVLYSFNDSWFLtfppegftlrwYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 100 AIARHQFPGRTLLLSIIDLPFSISPVVvglmlvllygrqgwFGAALQS--ANIRILFAFPGMVLASAFVCMPFVAREVLP 177
Cdd:COG1177   87 ALARYRFRGRRLLLALLLLPLVVPGIV--------------LGVALLLlfSALGLSGGLWGLILAHVVFTLPFVVLVVLA 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 178 ALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGniiGKTQTLPLFVEEMhVQYQ 257
Cdd:COG1177  153 RLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAG---PGVTTLPVYIYSM-IRRG 228

                        250       260
                 ....*....|....*....|.
gi 493669552 258 TTASYSAAVVLgsLSFVTLVF 278
Cdd:COG1177  229 ISPEINALSTL--LILLSLLL 247
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
31-278 9.42e-28

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 111.79  E-value: 9.42e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  31 ALVLAVILFVGLVLFVPAANIFVGAFRNGWSG------FARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARH 104
Cdd:COG1178  289 LALALCLLLVLLGLLLPLLALLLWSLTKALDDnltldnYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRR 368

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 105 QFPGRTLLLSIIDLPFSISPVVVGLmlvllygrqGWFGAALQSANIRILFAFPGMVLASAFVCMPFVAREVLPALEEIGT 184
Cdd:COG1178  369 RGRLARLLDRLAMLPYAVPGIVLGL---------GLLLLFNRPLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDP 439

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 185 EQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNiigKTQTLPLFVEEMHVQYQTTASYSA 264
Cdd:COG1178  440 SLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPP---GFETLAVLIYQLASSGRYGEAAAL 516

                        250
                 ....*....|....
gi 493669552 265 AVVLGSLSFVTLVF 278
Cdd:COG1178  517 ALLLVLVSLLPVLL 530
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 31-288 1.08e-25

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 102.92  E-value: 1.08e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  31 ALVLAVILFVGLVLFVPAANIFVGAFRN-----------GWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTAL 99
Cdd:COG1176   13 LLLLPALLWLLLFFVLPLLLLLVYSFTTrdpyggvvpgfTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 100 AIARHQFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANI-----RILFAFPGMVLASAFVCMPFVARE 174
Cdd:COG1176   93 FLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLideplRLLYTEFAVVIGLVYVYLPFMVLP 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 175 VLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGniiGKTQTLPLFVEEmhv 254
Cdd:COG1176  173 LYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGG---GKVLMIGNLIYQ--- 246

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 493669552 255 QYQTTASYSAA-----VVLGSLSFVTLVFKKLLEAKKTK 288
Cdd:COG1176  247 QFLSALNWPLAaalavVLLLIVLLVLLLYLRLLRRRRLL 285
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
31-286 1.06e-21

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 92.12  E-value: 1.06e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  31 ALVLAVILFVGLVLFVPAANIFVGAFRN-----------GWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTAL 99
Cdd:COG1175   22 LFLLPALLLLLVFVLYPLLYTLYLSFTDwnllgpppefvGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLAL 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 100 AIARhQFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQ-GWFGAALQSANIRIL-------FAFPGMVLASAFVCMPFV 171
Cdd:COG1175  102 LLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDyGLLNALLGALGLEPInwlgdpsLALPAVIIVTVWKGTGFN 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 172 AREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVV-SGNIIGKTQTLPLFVE 250
Cdd:COG1175  181 MLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLtGGGPGNSTTTLVLYIY 260

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 493669552 251 EMHVQYQTTASYSA-AVVLGSLSFV-TLVFKKLLEAKK 286
Cdd:COG1175  261 QTAFQQFDFGYASAiAVVLFLIILVlTLLQLRLLRRRE 298
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 79-274 3.12e-20

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 85.79  E-value: 3.12e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  79 SVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGaalqsanIRILFAFPG 158
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG-------ILPGLGLPA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 159 MVLASAFVcMPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNI 238
Cdd:cd06261   77 LILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE 155

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 493669552 239 IGKTQTLPLFVEEmhVQYQTTASYSAAVVLGSLSFV 274
Cdd:cd06261  156 APGPGTGLLLIFA--ILFPGDLGVAAAVALILLLLS 189
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 34-219 1.01e-16

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 79.88  E-value: 1.01e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  34 LAVILFVGLVLFVPAANIFVGAFRNGWSGfaravtsPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLLL 113
Cdd:PRK09433  11 ALLVALALLALLALWLHAPGGDWDAVWQD-------SYLWHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 114 SIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILFA---FPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAA 190
Cdd:PRK09433  84 RLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLLQALGLEWPFSiygLQGILLAHVFFNLPLATRLLLQALESIPAEQRQLA 163

                        170       180
                 ....*....|....*....|....*....
gi 493669552 191 KTMGANDWQTFWRVTLPSIRWSLLYGILL 219
Cdd:PRK09433 164 AQLGMRGWQFFRLVEWPYLRRQLPPVAAL 192
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 31-237 2.42e-16

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 78.57  E-value: 2.42e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552   31 ALVLAVILFVGLVLFVPAANIFVGAFRN------GWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARH 104
Cdd:TIGR03262   5 LLLAGMILALLLFLLLPLLALLTKSVYDsdgdfiGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  105 QFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIrilFAFPGMVLASAFVCMPFVAREVLPALEEIGT 184
Cdd:TIGR03262  85 RIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFSI---YGFWGIVIGEVFYTFPHALMILVTALSLADG 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 493669552  185 EQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGN 237
Cdd:TIGR03262 162 RLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGD 214
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 79-245 5.09e-12

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 63.33  E-value: 5.09e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  79 SVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAalqsanIRILFAFPG 158
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGF------LGLLYTPTA 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 159 MVLASAFVCMPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVtLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNI 238
Cdd:NF038017  75 MIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGGNI 153


                 ....*..
gi 493669552 239 IGKTQTL 245
Cdd:NF038017 154 RGYTRVL 160
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 30-250 1.42e-11

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 63.48  E-value: 1.42e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  30 VALVLAVILFVGLVLFVPAANIFVGAFRN----GWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQ 105
Cdd:PRK15050  25 LLWLLLPLLVLAPLVVYPLVRVVLQSLTGehglGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVP 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 106 FPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSAN------IRILFAFPGMVLASAFVCMPFVAREVLPAL 179
Cdd:PRK15050 105 FPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRLFgleappLDFLYSPGGVILAEITFYTPFVVRPLLAAF 184

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493669552 180 EEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNiigKTQTLPLFVE 250
Cdd:PRK15050 185 AQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAK---DVVTLPVLIY 252
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 31-210 7.40e-11

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 61.26  E-value: 7.40e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  31 ALVLAVILFVGLVLFVPAANIFVGAFRNG----------------WSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFG 94
Cdd:COG0395   15 ILLYLLLILLALLFLFPLYWMVVTSFKPPaeifsgppsllpseftLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLS 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  95 IVTALAIARHQFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGaalqsanirilfAFPGMVLASAFVCMPF---V 171
Cdd:COG0395   95 SLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLN------------TYWGLILPYLAFGLPFgifL 162

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 493669552 172 AREvlpALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIR 210
Cdd:COG0395  163 LRQ---FFRSIPRELEEAARIDGASEFRIFWRIVLPLSK 198
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 34-210 7.40e-11

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 62.24  E-value: 7.40e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552   34 LAVILFVGLVLFVPAANIFVGAFRNGWsgfaRAVTSPEFL-HAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLL 112
Cdd:TIGR01253  10 VSAISFIIAFAGAAFLAIFALAGEDDW----RAVFQDDYLqHLILFSFGQAFLSALLSIFFAIFLARALFRKPFLGKKAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  113 LSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQSANIRILF---AFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEA 189
Cdd:TIGR01253  86 LKLCALTFILPALVAIFGIIGIYGRQGWLATLANLFGLEWQFhiyGLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQL 165

                         170       180
                  ....*....|....*....|.
gi 493669552  190 AKTMGANDWQTFWRVTLPSIR 210
Cdd:TIGR01253 166 AAQLGLQGWHFFKFVEWPVFR 186
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 155-286 1.37e-09

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 57.66  E-value: 1.37e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  155 AFPGMVLASAFVC----MPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGA 230
Cdd:TIGR02138 146 LFGGPILTAGIVLaimiLPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMA 225

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493669552  231 VAVVSGN--------IIGKTQTLP-----LFVEEMHVQYQTTASYSAAVVLGSLSFVTLVFKKLLEAKK 286
Cdd:TIGR02138 226 VTMVIGNvfpisplsLFDPGTTITslianQFGEASGGSVHTSALFALGLVLFVITLLVNILARYIVRRR 294
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 35-274 2.03e-09

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 57.92  E-value: 2.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  35 AVILFVGLVLFVPAANIFVGAFRngwSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLLLS 114
Cdd:PRK09433 283 LLIVLALLLLLPPLLAVVVSGLN---ASLLRVLAQPALWQALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRKLAAQ 359

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 115 IID----LPFSISPVVVGLmlvllygrqGWFGAALQSANIRiLFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAA 190
Cdd:PRK09433 360 ALElsgmLILAMPGIVLAT---------GLFLLLRNTTDLP-ASALGIVILTNALMALPYALRVLEPPMRDIAARYGRLC 429

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 191 KTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVSGNiigKTQTLPLFVEEMHVQYQTTASYSAAVVLGS 270
Cdd:PRK09433 430 QSLGIRGWSRLRLIELRALRRPLAQAFAFACALSLGDFGVIALFGSQ---DFRTLPFLLYQQLGSYRSQDAAVTALLLLL 506


                 ....
gi 493669552 271 LSFV 274
Cdd:PRK09433 507 LCLL 510
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 90-288 2.72e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 52.69  E-value: 2.72e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552   90 SVIFGIVTALaiaRHQFPGRTLLLSIIDLPFSIsPVVVGLMLVLLYGRQGWFGaalqsanirilFAFPGMVLASAFVCMP 169
Cdd:pfam00528   1 GIPLGIIAAL---RRGRRLDRLLRPLIDLLQAL-PSFVLAILLVVIAILSILG-----------HGILPAIILALLGWAG 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  170 FVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVVsGNIIGKTQTLPLFV 249
Cdd:pfam00528  66 YARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL-GSWPGLGLLLIEAI 144

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 493669552  250 EEMHVQYQTTASYSAAVVLGSLSFVTLVFKKLLEAKKTK 288
Cdd:pfam00528 145 LGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 37-288 3.78e-08

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 53.06  E-value: 3.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  37 ILFVGLV---LFVPAANIFVGAFRN-----GWSGF-----ARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIAR 103
Cdd:PRK09500   7 GGFMTLVyayLYIPIIILIVNSFNSsrfgiNWKGFttkwyELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYR 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 104 HQFPGRTLLLSII-------DLPFSISPVVVGLMlvllygrqgwfgaalqsanIRILFAFPGMVLASAFVCMPFVAREVL 176
Cdd:PRK09500  87 YRFRGKKFVSGMLfvvmmspDIVMAISLLVLFML-------------------LGIQLGFWSLLFAHITFCLPFVVVTVY 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 177 PALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEfgavAVVSGNIIGKT-QTLPLFVEEMhVQ 255
Cdd:PRK09500 148 SRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDD----VVVSSFVTGPSyEILPLKIYSM-VK 222

                        250       260       270
                 ....*....|....*....|....*....|....
gi 493669552 256 YQTTASYSA-AVVLGSLSFVTLVFKKLLEAKKTK 288
Cdd:PRK09500 223 VGVSPEVNAlATILLVLSLVLVILSQLLARDKTK 256
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 79-245 7.47e-08

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 52.38  E-value: 7.47e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  79 SVMIDAIVVPVSVIFGIVTALAIARHQFPGRTLLLSIIDLPFSISPVVVGLMLVLLYGRQGWFGAALQS-----ANIRIL 153
Cdd:PRK09497  68 SLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWlgvidTPIRIM 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 154 FAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEF----- 228
Cdd:PRK09497 148 FTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFyvsdl 227

                        170
                 ....*....|....*....
gi 493669552 229 --GAVAVVSGNIIgKTQTL 245
Cdd:PRK09497 228 lgGAKNLLIGNVI-KSQFL 245
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 139-278 8.39e-07

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 49.32  E-value: 8.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 139 GWFGAALQSANIRILFAFPGM---VLASAFV----CMPFVA---REVLPAleeIGTEQEEAAKTMGANDWQTFWRVTLPS 208
Cdd:COG0573  132 GFWGLFVLVPLLRDLFPWPPSgfsLLTAGIVlaimILPTITslsRDALRA---VPRSLREAALALGATRWETIRKVVLPA 208

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493669552 209 IRWSLLYGILLTNARSMGEFGAVAVVSGN-------IIGKTQTLP-LFVEEMHVQYQTTASYSAAVVLGSLSFV-TLVF 278
Cdd:COG0573  209 ARSGIIAAVILGLGRALGETMAVLMVAGNapqipfsLFDPGRTLTaLIALEFGEAPFGSLHYSALFALGLVLFViTLLV 287
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 19-278 1.28e-05

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 45.53  E-value: 1.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  19 QNSQTQVSNFEVALVLAVILFVGLVLFVPAANIFVGAFRNG--------------WSGFARAVTSPEFLHAAKLSVMIDA 84
Cdd:COG3833    4 RKSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGgslyssslipenftLENYKKLFTETPFLRWFLNSLIVAV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  85 IVVPVSVIFGIVTALAIARHQFPGR-TLLLSIIDLpfsispvvvglmlvllygrqGWFGAALQSANIRILFAF------- 156
Cdd:COG3833   84 VTAIISVFLAALAAYAFSRFRFKGRkAGLLALLLL--------------------QMFPAFLALVALYLLLSAlgllntl 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 157 PGMVLASAFVCMPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFgavaVVSG 236
Cdd:COG3833  144 LGLILVYLGGAIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDF----ILAS 219

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 493669552 237 NIIGKT--QTLPL----FVEEMHVQYQTTasYSAAVVLGSLSfVTLVF 278
Cdd:COG3833  220 VLLRSPenYTLAVglysFVSDQRNTNWGV--FAAGAVLVAIP-IVILF 264
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 30-209 7.82e-05

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 43.21  E-value: 7.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  30 VALVLAVILFVGLVLFVPAANIFVGAFRNGWSGFARAVTSPEFLHAAKLSVMIDAIVVPVSVIFGIVTALAIARHQFpGR 109
Cdd:COG0600   17 LSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRL-LR 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 110 TLLLSIIDLPFSISPVVVGLMLVLlygrqgWFGaalqsanirilFAFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEA 189
Cdd:COG0600   96 RLLDPLLVFLRPIPPLALAPLLIL------WFG-----------IGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLEL 158

                        170       180
                 ....*....|....*....|
gi 493669552 190 AKTMGANDWQTFWRVTLPSI 209
Cdd:COG0600  159 ARSLGASRWQILRKVVLPAA 178
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 164-220 2.34e-04

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 41.58  E-value: 2.34e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 493669552 164 AFVCMPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLT 220
Cdd:COG2011  100 TIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVT 156
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 155-278 3.15e-03

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 38.75  E-value: 3.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552  155 AFPGMVLASAFVCMPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTNARSMGEFGAVAVV 234
Cdd:TIGR01253 398 ADGIVIFCNALMAIPFALKILEAPFHDIMARYEMLCNSLGIEGWQRFKLIELKALKAPLAQAFAFACALSIGDFGAIALF 477

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 493669552  235 SGNiigKTQTLPLFVEEMHVQYQTTASYSAAVVLGSLSFVTLVF 278
Cdd:TIGR01253 478 GND---DFRSLPFLLYQQIGNYRNQDAAVTAGILLLLCFILFAF 518
pstC PRK11275
phosphate ABC transporter permease PstC;
142-237 5.43e-03

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 37.75  E-value: 5.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493669552 142 GAALQSANIRILFAFPGMVLAsaFVCMPFVAREVLPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIRWSLLYGILLTN 221
Cdd:PRK11275 158 GALFSGPAFGIGILAAGVILA--IMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGL 235

                         90
                 ....*....|....*.
gi 493669552 222 ARSMGEFGAVAVVSGN 237
Cdd:PRK11275 236 GRALGETMAVTFIIGN 251
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 176-210 7.66e-03

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 37.38  E-value: 7.66e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 493669552 176 LPALEEIGTEQEEAAKTMGANDWQTFWRVTLPSIR 210
Cdd:COG4209  197 LAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIR 231
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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