NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|493689303|ref|WP_006639358|]
View 

MULTISPECIES: sporulation transcriptional regulator SpoIIID [Bacillus]

Protein Classification

sporulation transcriptional regulator SpoIIID( domain architecture ID 10572754)

sporulation transcriptional regulator SpoIIID regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor, sigma K

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SpoIIID COG5830
Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and ...
 1-84 1.46e-50

Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and sigma-K-dependent genes [Cell cycle control, cell division, chromosome partitioning, Transcription];


:

Pssm-ID: 444532  Cd Length: 84  Bit Score: 153.47  E-value: 1.46e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493689303  1 MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYK 80
Cdd:COG5830   1 MKDYIEERVLEIAKYIIETKATVRQAAKVFGVSKSTVHKDLTERLPKINPELAKEVKKILEYNKAERHIRGGEATKKKYK 80


                ....
gi 493689303 81 KEEI 84
Cdd:COG5830  81 KQKK 84
 
Name Accession Description Interval E-value
SpoIIID COG5830
Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and ...
 1-84 1.46e-50

Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and sigma-K-dependent genes [Cell cycle control, cell division, chromosome partitioning, Transcription];


Pssm-ID: 444532  Cd Length: 84  Bit Score: 153.47  E-value: 1.46e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493689303  1 MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYK 80
Cdd:COG5830   1 MKDYIEERVLEIAKYIIETKATVRQAAKVFGVSKSTVHKDLTERLPKINPELAKEVKKILEYNKAERHIRGGEATKKKYK 80


                ....
gi 493689303 81 KEEI 84
Cdd:COG5830  81 KQKK 84
SpoIIID pfam12116
Stage III sporulation protein D; This stage III sporulation protein is a small DNA-binding ...
 2-82 7.65e-42

Stage III sporulation protein D; This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.


Pssm-ID: 403367  Cd Length: 82  Bit Score: 131.34  E-value: 7.65e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493689303   2 HDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYKK 81
Cdd:pfam12116  1 KDYIEERVIEIAKYIVESKATVRQTAKVFGVSKSTVHKDVTERLPKINPQLAEQVKNVLDYNKAERHIRGGEATRMKYKK 80


                 .
gi 493689303  82 E 82
Cdd:pfam12116 81 E 81
spore_III_D TIGR02844
sporulation transcriptional regulator SpoIIID; Members of this protein are the transcriptional ...
 2-81 2.20e-40

sporulation transcriptional regulator SpoIIID; Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes. [Regulatory functions, DNA interactions, Cellular processes, Sporulation and germination]


Pssm-ID: 131891  Cd Length: 80  Bit Score: 127.69  E-value: 2.20e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493689303   2 HDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYKK 81
Cdd:TIGR02844  1 KDYIEERVLEIGKYIVETKATVRETAKVFGVSKSTVHKDVTERLPEINPDLAEEVKEVLDLNKAERHIRGGKATKLKYKK 80
 
Name Accession Description Interval E-value
SpoIIID COG5830
Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and ...
 1-84 1.46e-50

Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and sigma-K-dependent genes [Cell cycle control, cell division, chromosome partitioning, Transcription];


Pssm-ID: 444532  Cd Length: 84  Bit Score: 153.47  E-value: 1.46e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493689303  1 MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYK 80
Cdd:COG5830   1 MKDYIEERVLEIAKYIIETKATVRQAAKVFGVSKSTVHKDLTERLPKINPELAKEVKKILEYNKAERHIRGGEATKKKYK 80


                ....
gi 493689303 81 KEEI 84
Cdd:COG5830  81 KQKK 84
SpoIIID pfam12116
Stage III sporulation protein D; This stage III sporulation protein is a small DNA-binding ...
 2-82 7.65e-42

Stage III sporulation protein D; This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.


Pssm-ID: 403367  Cd Length: 82  Bit Score: 131.34  E-value: 7.65e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493689303   2 HDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYKK 81
Cdd:pfam12116  1 KDYIEERVIEIAKYIVESKATVRQTAKVFGVSKSTVHKDVTERLPKINPQLAEQVKNVLDYNKAERHIRGGEATRMKYKK 80


                 .
gi 493689303  82 E 82
Cdd:pfam12116 81 E 81
spore_III_D TIGR02844
sporulation transcriptional regulator SpoIIID; Members of this protein are the transcriptional ...
 2-81 2.20e-40

sporulation transcriptional regulator SpoIIID; Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes. [Regulatory functions, DNA interactions, Cellular processes, Sporulation and germination]


Pssm-ID: 131891  Cd Length: 80  Bit Score: 127.69  E-value: 2.20e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493689303   2 HDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYKK 81
Cdd:TIGR02844  1 KDYIEERVLEIGKYIVETKATVRETAKVFGVSKSTVHKDVTERLPEINPDLAEEVKEVLDLNKAERHIRGGKATKLKYKK 80
GlpR COG1349
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ...
 16-43 1.85e-03

DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];


Pssm-ID: 440960 [Multi-domain]  Cd Length: 254  Bit Score: 35.11  E-value: 1.85e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 493689303  16 IVETKKTVRV--IAKEFGVSKSTVHKDLTE 43
Cdd:COG1349   13 LLRERGRVSVeeLAERLGVSEETIRRDLAE 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH