NCBI Conserved Domain Search

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

5-332

1.02e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 78.20 E-value: 1.02e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345    5 GSRAFQKARQE-----KKQKKLIETQLTAAYTAFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFL 79
Cdd:TIGR02917 137 GLGQLELAQKSyeqalAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   80 AQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRnlTIALLRLKQG--EAALANAMRALE----- 152
Cdd:TIGR02917 217 RKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHY--LKALVDFQKKnyEDARETLQDALKsapey 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  153 ---------------------------LKADDVDSWSNR--AVAEMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHL 203
Cdd:TIGR02917 295 lpalllagaseyqlgnleqayqylnqiLKYAPNSHQARRllASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYL 374

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  204 ELHHFEQAEATFNAALAARPAHAELRAHRGRLYMLSGHTDAAEADFDAAVTLDPQLqlgwqGKAQICIL-----KGNVAP 278
Cdd:TIGR02917 375 ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL-----GRADLLLIlsylrSGQFDK 449

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 496247345  279 AMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPDYDEAIT 332
Cdd:TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAA 503

ACL4-like

cd24142

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

266-338

1.56e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 50.70 E-value: 1.56e-06

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496247345 266 KAQICILKGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPDYDeaiTKKIFYL 338
Cdd:cd24142    6 KAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGG---YEKYLYL 75

PRK11447

cellulose synthase subunit BcsC; Provisional

256-328

2.40e-06

cellulose synthase subunit BcsC; Provisional

Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 51.24 E-value: 2.40e-06

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496247345  256 DPQLQLGWQGKAQICilKGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPDYD 328
Cdd:PRK11447  267 DPAFRARAQGLAAVD--SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337

FxSxx_TPR

NF040586

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...

58-152

3.13e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.

Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 41.06 E-value: 3.13e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  58 AMHLLGVSLVSSARFAEA-----TTFLAQAVALEPNSAD---AHSNLGWALVNCERYEEARASLERSLALR------PNA 123
Cdd:NF040586 522 AANNLAVSLRLLGDYREAleldrEVLRRRRRVLGPDHPRtllSANNLARDLRELGRYAEALDLLEEALERYrevlggPDH 601

                         90       100       110
                 ....*....|....*....|....*....|..
gi 496247345 124 PITLR---NLTIALLRLKQGEAALANAMRALE 152
Cdd:NF040586 602 PDTLRaakSLAVALRRAGRLEEALELAEDTYE 633

TPR

smart00028

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

90-122

7.07e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 7.07e-03

                           10        20        30
                   ....*....|....*....|....*....|...
gi 496247345    90 ADAHSNLGWALVNCERYEEARASLERSLALRPN 122
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

7-92

7.15e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.29 E-value: 7.15e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   7 RAFQKARQEKKQKKLIETQLTAAYtaFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALE 86
Cdd:COG4235   38 AAYEKALRLDPDNADALLDLAEAL--LAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115


                 ....*.
gi 496247345  87 PNSADA 92
Cdd:COG4235  116 PADAPA 121

Name

Accession

Description

Interval

E-value

Spy

COG3914

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...

58-735

3.51e-161

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 481.03 E-value: 3.51e-161

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  58 AMHLLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIA---- 133
Cdd:COG3914    3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAalle 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 134 -----LLRLKQGEAALANAMRALELKADDVDSWSNRAVAEMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHLELHHF 208
Cdd:COG3914   83 laallLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 209 EQAEATFNaalaarpahaelRAhrgrlymlsghtdaaeadfdaaVTLDPQLQLGWQGKAQICILKGNVAPAMAACRRVLD 288
Cdd:COG3914  163 EEAIAALR------------RA----------------------LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 289 ANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQpdyDEAITKKIFYLDFLPGADFAAQ-QAARQYWWVAVGSKFPRR 367
Cdd:COG3914  209 LDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA---RGPSELSPFALLYLPDDDPAELlALARAWAQLVAAAAAPEL 285

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 368 KLAPRSLDPARRIVVGYVSADFRTHSAAFAFLPVLRGHDKTQVQVNCYSASPRHDAFTAQFKSIADVWVEAANLSDDELA 447
Cdd:COG3914  286 PPPPNPRDPDRKLRIGYVSADFRRHAVGYLLEPLLEHHDRSRFEIYAYSTGPDDDALTQRLRAAADHWRDIPGLSDEEAA 365

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 448 DRIQADGVDILVDLSGYTTGTRMPVFARKPAPIQVTAWGSGTGTGLATMDYFFADPVTVPEHVRPLFAEQVHDLP-SVIT 526
Cdd:COG3914  366 ELIRADGIDILVDLSGHTAGNRLGVFALRPAPVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPgSYLC 445

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 527 IDPLLDIPP-SPLP-----MLQNGHVTFGVYNRIDKISDEAIALWARLLAEVPDAKLVIKhlALNDPMVRDGLVARFVSR 600
Cdd:COG3914  446 YQPNDRAPEvAPLPtradlGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLK--GGGLPEARERLRAAAAAR 523

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 601 GVPDARLVCLGASERSEHLRSYERIDISLDPFPQNGGISTFESLYMGVPVVAKLGLGAASRAAGGILTAAGLPDWVAADD 680
Cdd:COG3914  524 GVDPDRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLTALGLPELIATSE 603

                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 496247345 681 DGYIRIAKTFAAQPELLAKLRAELPGMVARSPAGDVANYTRCVEAGYRQFWQTYC 735
Cdd:COG3914  604 EEYVALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRWC 658

Glyco_transf_41

pfam13844

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...

363-722

1.26e-32

Pssm-ID: 404688 Cd Length: 543 Bit Score: 133.29 E-value: 1.26e-32

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  363 KFPRRKLAPrsldpARRIVVGYVSADFRTHSAAFAFLPVLRGHDKTQVQVNCYSASPRHDA-FTAQFKSIADVWVEAANL 441
Cdd:pfam13844  69 KFPKDLSLS-----GGRLRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTnFRSKIARESEHFVDLSQI 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  442 SDD-ELADRIQADGVDILVDLSGYTTGTRMPVFARKPAPIQVTaWGSGTGTGLAT-MDYFFADPVTVPEHVRPLFAEQVH 519
Cdd:pfam13844 144 PCNgKAADRIHADGIHILVNMNGYTKGARNEIFALRPAPIQVM-WLGYPGTSGASfMDYIITDAVTSPLELADQYSEKLA 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  520 DLP-------------------------------------SVITIDPLLD-----------------------------I 533
Cdd:pfam13844 223 YMPhtffigdhrqmfphlkeraivtdksdgtkvrdnvavvNATDLKPLLEktevkdkvkevvvvettgnsrdsskvevvL 302

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  534 PPSPLP-------MLQNGHVTFGV-----------------------------------------------YNRIDKISD 559
Cdd:pfam13844 303 PVIELPttepiesMIQSGQIQTSVngvvvqnglattqtnnkaatgeevpssivvttrqqyglpddaivycnFNQLYKIDP 382

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  560 EAIALWARLLAEVPDAKL-VIKHLALNDPMVRdglvARFVSRGVPDARLVCLGASERSEHLRSYERIDISLDPFPQNGGI 638
Cdd:pfam13844 383 PTLEMWVNILKRVPNSVLwLLRFPAVGEPNIL----ATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHT 458

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  639 STFESLYMGVPVVAKLGLGAASRAAGGILTAAGLPDWVAADDDGYIRIAKTFAAQPELLAKLRAELPGMVARSPAGDVAN 718
Cdd:pfam13844 459 TGMDVLWAGTPMVTLPGETLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQ 538


                  ....
gi 496247345  719 YTRC 722
Cdd:pfam13844 539 YTQD 542

TPR

COG0457

Tetratricopeptide (TPR) repeat [General function prediction only];

49-236

7.40e-26

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 107.01 E-value: 7.40e-26

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  49 LQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLR 128
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 129 NLTIALLRLKQGEAALANAMRALELKADDVDSWSNRAVAEMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHLELHHF 208
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                        170       180
                 ....*....|....*....|....*...
gi 496247345 209 EQAEATFNAALAARPAHAELRAHRGRLY 236
Cdd:COG0457  161 EEALELLEKLEAAALAALLAAALGEAAL 188

TPR

COG0457

Tetratricopeptide (TPR) repeat [General function prediction only];

83-241

1.17e-23

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 100.47 E-value: 1.17e-23

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  83 VALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDVDSWS 162
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 496247345 163 NRAVAEMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHLELHHFEQAEATFNAALAARPAHAELRAHRGRLYMLSGH 241
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159

TPR

COG0457

Tetratricopeptide (TPR) repeat [General function prediction only];

29-175

1.41e-21

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 94.69 E-value: 1.41e-21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  29 AYTAFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEE 108
Cdd:COG0457   15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEE 94

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 496247345 109 ARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDVDSWSNRAVAEMMLRRWD 175
Cdd:COG0457   95 ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

61-354

2.35e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 85.94 E-value: 2.35e-18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  61 LLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKQG 140
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 141 EAALANAMRALELKADDVDSWSNRAVAEMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHLELHHFEQAEATFNaala 220
Cdd:COG2956   93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE---- 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 221 arpahaelRAhrgrlymlsghtdaaeadfdaaVTLDPQLQLGWQGKAQICILKGNVAPAMAACRRVLDANPAAQTALTLL 300
Cdd:COG2956  169 --------KA----------------------LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL 218

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 496247345 301 GACLGRLGDIAGAVAQFDQALAVQPDYDEAITKKIFYLDfLPGADFAAQQAARQ 354
Cdd:COG2956  219 AELYEKLGDPEEALELLRKALELDPSDDLLLALADLLER-KEGLEAALALLERQ 271

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

23-157

2.81e-18

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 81.78 E-value: 2.81e-18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  23 ETQLTAAYTAFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVN 102
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 496247345 103 CERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADD 157
Cdd:COG4783   85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

54-191

1.24e-16

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.15 E-value: 1.24e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  54 GCFDAMHLLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIA 133
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 496247345 134 LLRLKQGEAALANAMRALELKADDVDSWSNRAVAEMMLRRWDAAAASAERALTYNPTH 191
Cdd:COG4783   82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

47-290

1.37e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.54 E-value: 1.37e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  47 KLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPIT 126
Cdd:COG2956   33 EALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEA 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 127 LRNLTIALLRLKQGEAALANAMRALELKADDVDSWSNRAVAEMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHLELH 206
Cdd:COG2956  113 LRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 207 HFEQAEATFNAALAARPAHAELRAHRGRLYMLSGHTDAAEADFDAAVTLDPQLQLgWQGKAQICILKGNVAPAMAACRRV 286
Cdd:COG2956  193 DYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQ 271


                 ....
gi 496247345 287 LDAN 290
Cdd:COG2956  272 LRRH 275

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

5-332

1.02e-14

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 78.20 E-value: 1.02e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345    5 GSRAFQKARQE-----KKQKKLIETQLTAAYTAFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFL 79
Cdd:TIGR02917 137 GLGQLELAQKSyeqalAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   80 AQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRnlTIALLRLKQG--EAALANAMRALE----- 152
Cdd:TIGR02917 217 RKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHY--LKALVDFQKKnyEDARETLQDALKsapey 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  153 ---------------------------LKADDVDSWSNR--AVAEMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHL 203
Cdd:TIGR02917 295 lpalllagaseyqlgnleqayqylnqiLKYAPNSHQARRllASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYL 374

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  204 ELHHFEQAEATFNAALAARPAHAELRAHRGRLYMLSGHTDAAEADFDAAVTLDPQLqlgwqGKAQICIL-----KGNVAP 278
Cdd:TIGR02917 375 ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL-----GRADLLLIlsylrSGQFDK 449

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 496247345  279 AMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPDYDEAIT 332
Cdd:TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAA 503

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

26-326

3.29e-14

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 76.66 E-value: 3.29e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   26 LTAAYTAFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVNCER 105
Cdd:TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  106 YEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDVDSWSNRAVAEMMLRRWDAAAASAERAL 185
Cdd:TIGR02917 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  186 TYNPTHFEAMVNKGLAHLELHHFEQAEATFNaaLAARPAHAELRAHRG--RLYMLSGHTDAAEADFDAAVTLDPQLQLGW 263
Cdd:TIGR02917 493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFE--KVLTIDPKNLRAILAlaGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496247345  264 QGKAQICILKGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPD 326
Cdd:TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

49-159

7.75e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 68.88 E-value: 7.75e-14

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  49 LQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLR 128
Cdd:COG4235   10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALY 89

                         90       100       110
                 ....*....|....*....|....*....|.
gi 496247345 129 NLTIALLRLKQGEAALANAMRALELKADDVD 159
Cdd:COG4235   90 LLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

5-338

2.47e-13

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.96 E-value: 2.47e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345    5 GSRAFQKARQEKKQKKLIETQLTAAYTAFRA------GRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTF 78
Cdd:TIGR02917 102 LQGKFQQVLDELPGKTLLDDEGAAELLALRGlaylglGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAL 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   79 LAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDV 158
Cdd:TIGR02917 182 IDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSP 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  159 DSWSNRAVAEMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHLELHHFEQAEATFNaalaarpahaelrahrgrlyml 238
Cdd:TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLN---------------------- 319

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  239 sghtdaaeadfdAAVTLDPQLQLGWQGKAQICILKGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFD 318
Cdd:TIGR02917 320 ------------QILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLA 387

                         330       340
                  ....*....|....*....|.
gi 496247345  319 QALAVQPDYDEAITKK-IFYL 338
Cdd:TIGR02917 388 KATELDPENAAARTQLgISKL 408

NlpI

COG4785

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

82-205

5.20e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 69.17 E-value: 5.20e-13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  82 AVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDVDSW 161
Cdd:COG4785   65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 496247345 162 SNRAVAEMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHLEL 205
Cdd:COG4785  145 LNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL 188

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

74-175

5.22e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 66.57 E-value: 5.22e-13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  74 EATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALEL 153
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100
                 ....*....|....*....|..
gi 496247345 154 KADDVDSWSNRAVAEMMLRRWD 175
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYA 102

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

7-153

7.04e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.91 E-value: 7.04e-13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   7 RAFQKARQEKKQKKLIETQLTAAYTAFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALE 86
Cdd:COG5010    5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 496247345  87 PNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALEL 153
Cdd:COG5010   85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

71-156

2.59e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 63.27 E-value: 2.59e-12

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  71 RFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARAsLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRA 150
Cdd:COG3063    7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85


                 ....*.
gi 496247345 151 LELKAD 156
Cdd:COG3063   86 LELDPS 91

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

7-213

1.30e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.91 E-value: 1.30e-11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   7 RAFQKARQEKKQKKLIETQLTAAYtaFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALE 86
Cdd:COG2956   63 RIHQKLLERDPDRAEALLELAQDY--LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  87 PNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDVDSWSNRAV 166
Cdd:COG2956  141 PENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAE 220

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 496247345 167 AEMMLRRWDAAAASAERALTYNPTHfEAMVNKGLAHLELHHFEQAEA 213
Cdd:COG2956  221 LYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALA 266

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

8-216

1.43e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.52 E-value: 1.43e-11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   8 AFQKArqEKKQKKLIETQLTAAYTAFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALEP 87
Cdd:COG2956   30 LLEEA--LELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDP 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  88 NSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDVDSWSNRAVA 167
Cdd:COG2956  108 DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL 187

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 496247345 168 EMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHLELHHFEQAEATFN 216
Cdd:COG2956  188 YLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLR 236

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

90-215

1.63e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 56.74 E-value: 1.63e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  90 ADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDVDSWSNRAVAEM 169
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 496247345 170 MLRRWDAAAASAERALTYNPTHFEAMVNKGLAHLELHHFEQAEATF 215
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

58-189

3.02e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.51 E-value: 3.02e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  58 AMHLLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRL 137
Cdd:COG5010   22 TLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS 101

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 496247345 138 KQGEAALANAMRALELKADDVDSWSNRAVAEMMLRRWDAAAASAERALTYNP 189
Cdd:COG5010  102 GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

7-123

8.11e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.35 E-value: 8.11e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   7 RAFQKARQEKKQKKLIETQLTAAYTAFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALE 86
Cdd:COG5010   39 EDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 496247345  87 PNSADAHSNLGWALVNCERYEEARASLERSLALRPNA 123
Cdd:COG5010  119 PDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

32-123

1.05e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 1.05e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  32 AFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLaQAVALEPNSADAHSNLGWALVNCERYEEARA 111
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAEALLNLAELLLELGDYDEALA 80

                         90
                 ....*....|..
gi 496247345 112 SLERSLALRPNA 123
Cdd:COG3063   81 YLERALELDPSA 92

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

22-122

1.09e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.24 E-value: 1.09e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  22 IETQLTAAYTAFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALV 101
Cdd:COG4235   17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                         90       100
                 ....*....|....*....|.
gi 496247345 102 NCERYEEARASLERSLALRPN 122
Cdd:COG4235   97 QQGDYAEAIAAWQKLLALLPA 117

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

108-238

2.98e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.70 E-value: 2.98e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 108 EARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDVDSWSNRAVAEMMLRRWDAAAASAERALTY 187
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 496247345 188 NPTHFEAMVNKGLAHLELHHFEQAEATFNAALAARPAHAELRAHRGRLYML 238
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

193-327

4.95e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.50 E-value: 4.95e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 193 EAMVNKGLAHLELHHFEQAEATFNAALAARPAHAELRAHRGRLYMLSGHTDAAEADFDAAVTLDPQLQLGWQGKAQICIL 272
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 496247345 273 KGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPDY 327
Cdd:COG4783   85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

227-330

2.33e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.58 E-value: 2.33e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 227 ELRAHRGRLYMLSGHTDAAEADFDAAVTLDPQLQLGWQGKAQICILKGNVAPAMAACRRVLDANPAAQTALTLLGACLGR 306
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                         90       100
                 ....*....|....*....|....
gi 496247345 307 LGDIAGAVAQFDQALAVQPDYDEA 330
Cdd:COG4783   85 AGDYDEALALLEKALKLDPEHPEA 108

ACL4-like

cd24142

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

266-338

1.56e-06

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 50.70 E-value: 1.56e-06

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496247345 266 KAQICILKGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPDYDeaiTKKIFYL 338
Cdd:cd24142    6 KAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGG---YEKYLYL 75

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

223-330

1.59e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.08 E-value: 1.59e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 223 PAHAELRAHRGRLYMLSGHTDAAEADFDAAVTLDPQLQLGWQGKAQICILKGNVAPAMAACRRVLDANPAAQTALTLLGA 302
Cdd:COG4235   14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93

                         90       100
                 ....*....|....*....|....*...
gi 496247345 303 CLGRLGDIAGAVAQFDQALAVQPDYDEA 330
Cdd:COG4235   94 AAFQQGDYAEAIAAWQKLLALLPADAPA 121

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

71-215

1.66e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.42 E-value: 1.66e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  71 RFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRA 150
Cdd:COG5010    1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496247345 151 LELKADDVDSWSNRAVAEMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHLELHHFEQAEATF 215
Cdd:COG5010   81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAAL 145

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

34-167

2.31e-06

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 51.24 E-value: 2.31e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   34 RAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVNCERyEEARASL 113
Cdd:TIGR02917 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA 826

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 496247345  114 ERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDVDSWSNRAVA 167
Cdd:TIGR02917 827 ERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880

PRK11447

cellulose synthase subunit BcsC; Provisional

256-328

2.40e-06

cellulose synthase subunit BcsC; Provisional

Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 51.24 E-value: 2.40e-06

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496247345  256 DPQLQLGWQGKAQICilKGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPDYD 328
Cdd:PRK11447  267 DPAFRARAQGLAAVD--SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

49-332

2.44e-06

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 51.24 E-value: 2.44e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   49 LQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLAL-RPNAPITL 127
Cdd:TIGR02917  49 LQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLdDEGAAELL 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  128 RNLTIALLRLKQGEAALANAMRALELKADDVDSWSNRAVAEMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHLELHH 207
Cdd:TIGR02917 129 ALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGN 208

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  208 FEQAEATFNAALAARPAHAELRAHRGRLYMLSGHTDAAEADFDAAVTLDPQLQLGWQGKAQICILKGNVAPAMAACRRVL 287
Cdd:TIGR02917 209 IELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL 288

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 496247345  288 DANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPDYDEAIT 332
Cdd:TIGR02917 289 KSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARR 333

CpoB

COG1729

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

30-124

2.61e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.91 E-value: 2.61e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  30 YTAFRAGRQADTQALCAKLLQEVPGCF---DAMHLLGVSLVSSARFAEATTFLAQAVALEPNS---ADAHSNLGWALVNC 103
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLEL 80

                         90       100
                 ....*....|....*....|.
gi 496247345 104 ERYEEARASLERSLALRPNAP 124
Cdd:COG1729   81 GDYDKARATLEELIKKYPDSE 101

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

127-258

6.31e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.34 E-value: 6.31e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 127 LRNLTIALLRLKQGEAALANAMRALELKADDVDSWSNRAVAEMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHLELH 206
Cdd:COG4783    7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 496247345 207 HFEQAEATFNAALAARPAHAELRAHRGRLYMLSGHTDAAEADFDAAVTLDPQ 258
Cdd:COG4783   87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138

ACL4-like

cd24142

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

65-123

7.41e-06

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 48.39 E-value: 7.41e-06

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 496247345  65 SLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNA 123
Cdd:cd24142    9 ELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

9-326

1.42e-05

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.54 E-value: 1.42e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345    9 FQKARQE-----KKQKKLIETQLTAAYTAFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAV 83
Cdd:TIGR02917 243 FEEAEKHadallKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQIL 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   84 ALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDVDSWSN 163
Cdd:TIGR02917 323 KYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  164 RAVAEMMLRRWDAAAASAERALTYNPTHFEAMVNKGLAHLELHHFEQAEATFNAALAARPAHAELRAHRGRLYMLSGHTD 243
Cdd:TIGR02917 403 LGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLA 482

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  244 AAEADFDAAVTLDPQLQLGWQGKAQICILKGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAV 323
Cdd:TIGR02917 483 KAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562


                  ...
gi 496247345  324 QPD 326
Cdd:TIGR02917 563 NPQ 565

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

133-216

3.54e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.24 E-value: 3.54e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 133 ALLRLKQGEAALANAMRALELKADDVDSWSNRAVAEMMLRRWDAAAASAERaLTYNPTHFEAMVNKGLAHLELHHFEQAE 212
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKA-LKLDPNNAEALLNLAELLLELGDYDEAL 79


                 ....
gi 496247345 213 ATFN 216
Cdd:COG3063   80 AYLE 83

HemYx

COG3071

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...

13-153

9.74e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];

Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 45.29 E-value: 9.74e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  13 RQEKKQKKLIETQLTAAYTAFRAGRQADTQALCAKLLQEVPgcfDAMHLLGVSLVSSARFAEATTFLAQAVALEPNSADA 92
Cdd:COG3071  184 ALPRAERRDPELAAAYARALIALGDHDEAERLLREALKRQW---DPRLVRLYGRLQGGDPAKQLKRAEKWLKKHPNDPDL 260

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 496247345  93 HSNLGWALVNCERYEEARASLERSLALRPNAPiTLRNLTIALLRLKQGEAALANAMRALEL 153
Cdd:COG3071  261 LLALGRLCLRNQLWGKAREYLEAALALRPSAE-AYAELARLLEQLGDPEEAAEHYRKALAL 320

TPR_19

pfam14559

Tetratricopeptide repeat;

71-124

1.79e-04

Tetratricopeptide repeat;

Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 40.26 E-value: 1.79e-04

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 496247345   71 RFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAP 124
Cdd:pfam14559   3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDP 56

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

65-326

2.72e-04

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 44.30 E-value: 2.72e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   65 SLVSSAR-------FAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRL 137
Cdd:TIGR02917  24 ELIEAAKsylqknkYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQ 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  138 KQGEAALAnamralELKADDVDSWSNRAVAemmlrrwdaaaasaeraLTYnpthfeamvnKGLAHLELHHFEQAEATFNA 217
Cdd:TIGR02917 104 GKFQQVLD------ELPGKTLLDDEGAAEL-----------------LAL----------RGLAYLGLGQLELAQKSYEQ 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  218 ALAARPAHAELRAhrgrlymlsghtdaaeadfdaavtldpqlqlgwqGKAQICILKGNVAPAMAACRRVLDANPAAQTAL 297
Cdd:TIGR02917 151 ALAIDPRSLYAKL----------------------------------GLAQLALAENRFDEARALIDEVLTADPGNVDAL 196

                         250       260
                  ....*....|....*....|....*....
gi 496247345  298 TLLGACLGRLGDIAGAVAQFDQALAVQPD 326
Cdd:TIGR02917 197 LLKGDLLLSLGNIELALAAYRKAIALRPN 225

TPR_12

pfam13424

Tetratricopeptide repeat;

90-153

3.18e-04

Tetratricopeptide repeat;

Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.68 E-value: 3.18e-04

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 496247345   90 ADAHSNLGWALVNCERYEEARASLERSLAL--------RPNAPITLRNLTIALLRLKQGEAALANAMRALEL 153
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74

TPR_2

pfam07719

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...

90-122

4.02e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.

Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 38.27 E-value: 4.02e-04

                          10        20        30
                  ....*....|....*....|....*....|...
gi 496247345   90 ADAHSNLGWALVNCERYEEARASLERSLALRPN 122
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33

TPR_1

pfam00515

Tetratricopeptide repeat;

90-122

5.00e-04

Tetratricopeptide repeat;

Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 5.00e-04

                          10        20        30
                  ....*....|....*....|....*....|...
gi 496247345   90 ADAHSNLGWALVNCERYEEARASLERSLALRPN 122
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33

PRK11447

cellulose synthase subunit BcsC; Provisional

63-145

5.65e-04

cellulose synthase subunit BcsC; Provisional

Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 43.53 E-value: 5.65e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   63 GVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAP-----ITLRNLTIALLRL 137
Cdd:PRK11447  276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSnrdkwESLLKVNRYWLLI 355


                  ....*...
gi 496247345  138 KQGEAALA 145
Cdd:PRK11447  356 QQGDAALK 363

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

185-299

8.04e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.99 E-value: 8.04e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 185 LTYNPTHFEAMVNKGLAHLELHHFEQAEATFNAALAARPAHAELRAHRGRLYMLSGHTDAAEADFDAAVTLDPQLQLGWQ 264
Cdd:COG4235   10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALY 89

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 496247345 265 GKAQICILKGNVAPAMAACRRVLDANPAAQTALTL 299
Cdd:COG4235   90 LLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

259-330

8.06e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.02 E-value: 8.06e-04

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 496247345 259 LQLGWQGKAQICILKGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPDYDEA 330
Cdd:COG2956    7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA 78

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

273-330

1.04e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.00 E-value: 1.04e-03

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 496247345 273 KGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVaQFDQALAVQPDYDEA 330
Cdd:COG3063    5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEA 61

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

20-331

1.26e-03

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.38 E-value: 1.26e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345   20 KLIETQLTAAYTAFRAGRQADTQALCAKLLQEVPGCFDAMHLLGVSLVSSARFAEATTFLAQAVALEPNSADAHSNLGWA 99
Cdd:TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI 508

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  100 LVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDVDSWSNRAVAEMMLRRWDAAAA 179
Cdd:TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  180 SAERALTYNPTHFEAMVNKGLAHLELHHFEQAEATFNAALAARPAHAELRAHRGRLYMLSGHTDAAEADFDAAVTLDPQL 259
Cdd:TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 496247345  260 QLGWQGKAQICILKGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPDYDEAI 331
Cdd:TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI 740

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

255-331

1.46e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 1.46e-03

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 496247345 255 LDPQLQLGWQGKAQICILKGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPDYDEAI 331
Cdd:COG5010   49 KLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAY 125

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

193-325

1.48e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 1.48e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 193 EAMVNKGLAHLELHHFEQAEATFNAALAARPAHAELRAHRGRLYMLSGHTDAAEADFDAAVTLDPQLQLGWQGKAQICIL 272
Cdd:COG5010   21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 496247345 273 KGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQP 325
Cdd:COG5010  101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

253-326

1.53e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.23 E-value: 1.53e-03

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 496247345 253 VTLDPQLQLGWQGKAQICILKGNVAPAMAaCRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPD 326
Cdd:COG3063   19 LELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91

PLN03088

SGT1, suppressor of G2 allele of SKP1; Provisional

72-124

1.86e-03

SGT1, suppressor of G2 allele of SKP1; Provisional

Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 41.31 E-value: 1.86e-03

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 496247345  72 FAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAP 124
Cdd:PLN03088  52 FTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104

TPR_9

pfam13371

Tetratricopeptide repeat;

104-172

1.87e-03

Tetratricopeptide repeat;

Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 37.58 E-value: 1.87e-03

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 496247345  104 ERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDVDswsnRAVAEMMLR 172
Cdd:pfam13371   9 EDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPD----AEAIRELLR 73

NlpI

COG4785

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

255-356

2.02e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 40.28 E-value: 2.02e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 255 LDPQLQLGWQGKAQICILKGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPDYDEAITKK 334
Cdd:COG4785  102 LDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWL 181

                         90       100
                 ....*....|....*....|..
gi 496247345 335 ifYLDFLPGADFAAQQAARQYW 356
Cdd:COG4785  182 --YLAERKLDPEKALALLLEDW 201

TPR_12

pfam13424

Tetratricopeptide repeat;

58-122

2.54e-03

Tetratricopeptide repeat;

Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 37.37 E-value: 2.54e-03

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496247345   58 AMHLLGVSLVSSARFAEATTFLAQAVALE--------PNSADAHSNLGWALVNCERYEEARASLERSLALRPN 122
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77

TPR_17

pfam13431

Tetratricopeptide repeat;

81-111

2.54e-03

Tetratricopeptide repeat;

Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 35.98 E-value: 2.54e-03

                          10        20        30
                  ....*....|....*....|....*....|.
gi 496247345   81 QAVALEPNSADAHSNLGWALVNCERYEEARA 111
Cdd:pfam13431   4 KALELDPNNADAYYNLAVLLLELGQSETALQ 34

PRK09782

bacteriophage N4 receptor, outer membrane subunit; Provisional

23-174

3.10e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional

Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 41.05 E-value: 3.10e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  23 ETQLTAAYTAFRAG--------------RQADTQALCAKLLQEVPGCFD---AMHLLGVSLVSSAR-------------- 71
Cdd:PRK09782 543 EDLLAAANTAQAAGngaardrwlqqaeqRGLGDNALYWWLHAQRYIPGQpelALNDLTRSLNIAPSanayvaratiyrqr 622

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  72 --FAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMR 149
Cdd:PRK09782 623 hnVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 496247345 150 ALELKADDVDS-----------WSNRAVAEMMLRRW 174
Cdd:PRK09782 703 VIDDIDNQALItpltpeqnqqrFNFRRLHEEVGRRW 738

FxSxx_TPR

NF040586

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...

58-152

3.13e-03

Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 41.06 E-value: 3.13e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345  58 AMHLLGVSLVSSARFAEA-----TTFLAQAVALEPNSAD---AHSNLGWALVNCERYEEARASLERSLALR------PNA 123
Cdd:NF040586 522 AANNLAVSLRLLGDYREAleldrEVLRRRRRVLGPDHPRtllSANNLARDLRELGRYAEALDLLEEALERYrevlggPDH 601

                         90       100       110
                 ....*....|....*....|....*....|..
gi 496247345 124 PITLR---NLTIALLRLKQGEAALANAMRALE 152
Cdd:NF040586 602 PDTLRaakSLAVALRRAGRLEEALELAEDTYE 633

PRK15174

Vi polysaccharide transport protein VexE;

258-326

4.24e-03

Vi polysaccharide transport protein VexE;

Pssm-ID: 185096 [Multi-domain] Cd Length: 656 Bit Score: 40.50 E-value: 4.24e-03

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 496247345 258 QLQLGWQGKAQICI---LKGNVAPAMAACRRVLDANPAAQTALTLLGACLGRLGDIAGAVAQFDQALAVQPD 326
Cdd:PRK15174  71 TAKNGRDLLRRWVIsplASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG 142

PRK12370

HilA/EilA family virulence transcriptional regulator;

58-122

6.08e-03

HilA/EilA family virulence transcriptional regulator;

Pssm-ID: 237080 [Multi-domain] Cd Length: 553 Bit Score: 39.84 E-value: 6.08e-03

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 496247345  58 AMHLLGvsLVSSAR--FAEATTFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPN 122
Cdd:PRK12370 340 ALGLLG--LINTIHseYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

105-257

6.32e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.02 E-value: 6.32e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496247345 105 RYEEARASLERSLALRPNAPITLRNLTIALLRLKQGEAALANAMRALELKADDVDSWSNRAVAEMMLRRWDAAAASAERA 184
Cdd:COG5010    1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496247345 185 LTYNPTHFEAMVNKGLAHLELHHFEQAEATFNAALAARPAHAELRAHRGRLYMLSGHTDAAEADFDAAVTLDP 257
Cdd:COG5010   81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

TPR_8

pfam13181

Tetratricopeptide repeat;

90-122

6.50e-03

Tetratricopeptide repeat;

Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 34.68 E-value: 6.50e-03

                          10        20        30
                  ....*....|....*....|....*....|...
gi 496247345   90 ADAHSNLGWALVNCERYEEARASLERSLALRPN 122
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33

TPR

smart00028

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

90-122

7.07e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 7.07e-03

                           10        20        30
                   ....*....|....*....|....*....|...
gi 496247345    90 ADAHSNLGWALVNCERYEEARASLERSLALRPN 122
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33

NrfG