NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|499273945|ref|WP_010971338|]
View 

MULTISPECIES: porin [Agrobacterium tumefaciens complex]

Protein Classification

porin( domain architecture ID 10495026)

porin, similar to Brucella Omp2a and Omp2b, is a multi-pass trasmembrane protein which forms a pore that allows passive diffusion of small hydrophilic compounds across the outer membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Porin_2 pfam02530
Porin subfamily; This family consists of porins from the alpha subdivision of Proteobacteria ...
 30-352 1.19e-104

Porin subfamily; This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.


:

Pssm-ID: 308243  Cd Length: 355  Bit Score: 311.80  E-value: 1.19e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499273945   30 EPEPLEYVRVCDAFGTGFFYIPGTETCLKFSGYVRFQTNFGR---------DQSGTSDWNSFTRAQFNVDTRTDTELGAL 100
Cdd:pfam02530   7 EPEPVEYVKVCDAYGAGYFYIPGTETCLKIGGYVRADVGFGDnpdnggdgqGGRLTSDWDKFSRADLNVDTRTETELGTL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499273945  101 RGFIEFRADAGNGQSSSSGLEA------RQAFIELGGLRVGKFYSWWDDDLSGETDLLSS------NTLFNSIRYTYDTG 168
Cdd:pfam02530  87 RTFFESVFNWTTGSYTGDGSDSngglgvYFAFIQLGGLRVGKDYSWFDTWLGYEGDVINNsggpygNTGTNSISYTFDAG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499273945  169 S-FWAGISVDELEGTGSQFATITGAAdpvtglfplsqEPDNNVGITAGVGGKFGAATLQLIGSYDVDQEEGAIRAMVFAD 247
Cdd:pfam02530 167 NgFSAGISLEELEGTRDLGAYGANSY-----------IGSYTPDVVGGVKVKQGWGAFQGVVAYDSDKEEGAVRARLSVK 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499273945  248 IGPG-TLGLAGVWASGPNAYYALSE-------WTVAAEYAIKATDRLTITPAVQYLGNVGDKitvvntgataivsndWSN 319
Cdd:pfam02530 236 AGDGdSLNIAGGYASGANRYTGDSEyhnwggnWAVWAGYTYKATDKTAITPGAQWGGAGNVC---------------NPD 300

                         330       340       350
                  ....*....|....*....|....*....|...
gi 499273945  320 RDAWTAGATIDYKITDGLSTKITANYYDEDGQD 352
Cdd:pfam02530 301 FDGWAVGANVDYTIVDNLTFTAEVRYTDLGQKY 333
 
Name Accession Description Interval E-value
Porin_2 pfam02530
Porin subfamily; This family consists of porins from the alpha subdivision of Proteobacteria ...
 30-352 1.19e-104

Porin subfamily; This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.


Pssm-ID: 308243  Cd Length: 355  Bit Score: 311.80  E-value: 1.19e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499273945   30 EPEPLEYVRVCDAFGTGFFYIPGTETCLKFSGYVRFQTNFGR---------DQSGTSDWNSFTRAQFNVDTRTDTELGAL 100
Cdd:pfam02530   7 EPEPVEYVKVCDAYGAGYFYIPGTETCLKIGGYVRADVGFGDnpdnggdgqGGRLTSDWDKFSRADLNVDTRTETELGTL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499273945  101 RGFIEFRADAGNGQSSSSGLEA------RQAFIELGGLRVGKFYSWWDDDLSGETDLLSS------NTLFNSIRYTYDTG 168
Cdd:pfam02530  87 RTFFESVFNWTTGSYTGDGSDSngglgvYFAFIQLGGLRVGKDYSWFDTWLGYEGDVINNsggpygNTGTNSISYTFDAG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499273945  169 S-FWAGISVDELEGTGSQFATITGAAdpvtglfplsqEPDNNVGITAGVGGKFGAATLQLIGSYDVDQEEGAIRAMVFAD 247
Cdd:pfam02530 167 NgFSAGISLEELEGTRDLGAYGANSY-----------IGSYTPDVVGGVKVKQGWGAFQGVVAYDSDKEEGAVRARLSVK 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499273945  248 IGPG-TLGLAGVWASGPNAYYALSE-------WTVAAEYAIKATDRLTITPAVQYLGNVGDKitvvntgataivsndWSN 319
Cdd:pfam02530 236 AGDGdSLNIAGGYASGANRYTGDSEyhnwggnWAVWAGYTYKATDKTAITPGAQWGGAGNVC---------------NPD 300

                         330       340       350
                  ....*....|....*....|....*....|...
gi 499273945  320 RDAWTAGATIDYKITDGLSTKITANYYDEDGQD 352
Cdd:pfam02530 301 FDGWAVGANVDYTIVDNLTFTAEVRYTDLGQKY 333
 
Name Accession Description Interval E-value
Porin_2 pfam02530
Porin subfamily; This family consists of porins from the alpha subdivision of Proteobacteria ...
 30-352 1.19e-104

Porin subfamily; This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.


Pssm-ID: 308243  Cd Length: 355  Bit Score: 311.80  E-value: 1.19e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499273945   30 EPEPLEYVRVCDAFGTGFFYIPGTETCLKFSGYVRFQTNFGR---------DQSGTSDWNSFTRAQFNVDTRTDTELGAL 100
Cdd:pfam02530   7 EPEPVEYVKVCDAYGAGYFYIPGTETCLKIGGYVRADVGFGDnpdnggdgqGGRLTSDWDKFSRADLNVDTRTETELGTL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499273945  101 RGFIEFRADAGNGQSSSSGLEA------RQAFIELGGLRVGKFYSWWDDDLSGETDLLSS------NTLFNSIRYTYDTG 168
Cdd:pfam02530  87 RTFFESVFNWTTGSYTGDGSDSngglgvYFAFIQLGGLRVGKDYSWFDTWLGYEGDVINNsggpygNTGTNSISYTFDAG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499273945  169 S-FWAGISVDELEGTGSQFATITGAAdpvtglfplsqEPDNNVGITAGVGGKFGAATLQLIGSYDVDQEEGAIRAMVFAD 247
Cdd:pfam02530 167 NgFSAGISLEELEGTRDLGAYGANSY-----------IGSYTPDVVGGVKVKQGWGAFQGVVAYDSDKEEGAVRARLSVK 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499273945  248 IGPG-TLGLAGVWASGPNAYYALSE-------WTVAAEYAIKATDRLTITPAVQYLGNVGDKitvvntgataivsndWSN 319
Cdd:pfam02530 236 AGDGdSLNIAGGYASGANRYTGDSEyhnwggnWAVWAGYTYKATDKTAITPGAQWGGAGNVC---------------NPD 300

                         330       340       350
                  ....*....|....*....|....*....|...
gi 499273945  320 RDAWTAGATIDYKITDGLSTKITANYYDEDGQD 352
Cdd:pfam02530 301 FDGWAVGANVDYTIVDNLTFTAEVRYTDLGQKY 333
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH