|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
1-504 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 673.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 1 MTDDPGSgFTTVWNAVVSELNGDpkvddgpssDANLSAPltPQQRAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRA 80
Cdd:PRK14086 1 MADVQAD-LAAVWPRVLEQLLGE---------GDGQSVP--AKDEAWLKRCQPLALVADTALLAVPNEFAKEVLEGRLAP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 81 PITDALSRRLGHQIqlgvRIAPPATDEADDTTVPPSENPATTSPDTTTD------------------------------- 129
Cdd:PRK14086 69 IISETLSRELGRPI----RIAITVDPSAGEPAPPPPHARRTSEPELPRPgrrpyegyggpraddrppglprqdqlptarp 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 130 -----------------------------------------------------NDEIDDSAAARGDNQH----------- 145
Cdd:PRK14086 145 aypayqqrpepgawpraaddygwqqqrlgfpprapyaspasyapeqerdrepyDAGRPEYDQRRRDYDHprpdwdrprrd 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 146 ----------------------------------SWPSYFTERPRNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAAL 191
Cdd:PRK14086 225 rtdrpepppgaghvhrggpgpperddapvvpirpSAPGPLAAQPAPAPGPGEPTARLNPKYTFDTFVIGASNRFAHAAAV 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 192 AIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVD 271
Cdd:PRK14086 305 AVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVD 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 272 DIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERL 351
Cdd:PRK14086 385 DIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 352 AVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEEL 431
Cdd:PRK14086 465 NAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSAPEITAAAIMAATADYFGLTVEDL 544
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 500123058 432 RGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQR 504
Cdd:PRK14086 545 CGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQFGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIKNG 617
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
40-501 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 535.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 40 LTPQQ-RAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSEN 118
Cdd:TIGR00362 12 LSEQEyNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGEDEEELEPNSKKPEPAP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 119 PATTSPDTTTDNdeiddsaaargdnqhswpsyfterprntdsatagvtsLNRRYTFDTFVIGASNRFAHAAALAIAEAPA 198
Cdd:TIGR00362 92 PEAPAPPSSASG-------------------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAENPG 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 199 RAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEG 278
Cdd:TIGR00362 135 KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 279 KEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVL 358
Cdd:TIGR00362 215 KERTQEEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVL 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 359 ELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIAdANTMQISAATIMAATAEYFDTTVEELRGPGKTR 438
Cdd:TIGR00362 295 EFIAKNITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLR-AQKKEITIENIQKVVAKYYNIKVSDLKSKKRTR 373
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 500123058 439 ALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRI 501
Cdd:TIGR00362 374 NIVRPRQIAMYLAKELTDLSLPEIGKAFGgRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
168-470 |
2.09e-172 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 487.39 E-value: 2.09e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 168 LNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFI 247
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 248 NSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLI 327
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 328 TDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADAN 407
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 500123058 408 TmQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDH 470
Cdd:COG0593 241 K-EITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGgRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
168-386 |
5.32e-130 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 376.67 E-value: 5.32e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 168 LNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFI 247
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 248 NSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLI 327
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 500123058 328 TDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLN 386
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
415-501 |
2.76e-32 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 118.77 E-value: 2.76e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 415 TIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDH 493
Cdd:cd06571 3 LIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGgRDHSTVLHAVRKIEELLEEDPELKED 82
|
....*...
gi 500123058 494 VKELTTRI 501
Cdd:cd06571 83 VEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
416-479 |
1.72e-25 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 99.12 E-value: 1.72e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500123058 416 IMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAF-GRDHTTVMYAQRK 479
Cdd:smart00760 5 IIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFgGRDHSTVLHACRK 69
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
1-504 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 673.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 1 MTDDPGSgFTTVWNAVVSELNGDpkvddgpssDANLSAPltPQQRAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRA 80
Cdd:PRK14086 1 MADVQAD-LAAVWPRVLEQLLGE---------GDGQSVP--AKDEAWLKRCQPLALVADTALLAVPNEFAKEVLEGRLAP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 81 PITDALSRRLGHQIqlgvRIAPPATDEADDTTVPPSENPATTSPDTTTD------------------------------- 129
Cdd:PRK14086 69 IISETLSRELGRPI----RIAITVDPSAGEPAPPPPHARRTSEPELPRPgrrpyegyggpraddrppglprqdqlptarp 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 130 -----------------------------------------------------NDEIDDSAAARGDNQH----------- 145
Cdd:PRK14086 145 aypayqqrpepgawpraaddygwqqqrlgfpprapyaspasyapeqerdrepyDAGRPEYDQRRRDYDHprpdwdrprrd 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 146 ----------------------------------SWPSYFTERPRNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAAL 191
Cdd:PRK14086 225 rtdrpepppgaghvhrggpgpperddapvvpirpSAPGPLAAQPAPAPGPGEPTARLNPKYTFDTFVIGASNRFAHAAAV 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 192 AIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVD 271
Cdd:PRK14086 305 AVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVD 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 272 DIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERL 351
Cdd:PRK14086 385 DIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 352 AVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEEL 431
Cdd:PRK14086 465 NAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSAPEITAAAIMAATADYFGLTVEDL 544
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 500123058 432 RGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQR 504
Cdd:PRK14086 545 CGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQFGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIKNG 617
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
34-503 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 567.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 34 ANLSAPLTPQQ-RAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSrrlghqiqlgvriappatdeaddtt 112
Cdd:PRK00149 11 ERLKDELSEQEyETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ------------------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 113 vppsenpattspdtttdndeiddsaaargdnqhswpsyfterprntdsatagvtsLNRRYTFDTFVIGASNRFAHAAALA 192
Cdd:PRK00149 66 -------------------------------------------------------LNPKYTFDNFVVGKSNRLAHAAALA 90
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 193 IAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDD 272
Cdd:PRK00149 91 VAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDD 170
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 273 IQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLA 352
Cdd:PRK00149 171 IQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGID 250
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 353 VPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIAdANTMQISAATIMAATAEYFDTTVEELR 432
Cdd:PRK00149 251 LPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLA-AQKKKITIENIQKVVAEYYNIKVSDLK 329
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 500123058 433 GPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQ 503
Cdd:PRK00149 330 SKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGgRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
40-501 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 535.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 40 LTPQQ-RAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSEN 118
Cdd:TIGR00362 12 LSEQEyNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGEDEEELEPNSKKPEPAP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 119 PATTSPDTTTDNdeiddsaaargdnqhswpsyfterprntdsatagvtsLNRRYTFDTFVIGASNRFAHAAALAIAEAPA 198
Cdd:TIGR00362 92 PEAPAPPSSASG-------------------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAENPG 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 199 RAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEG 278
Cdd:TIGR00362 135 KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 279 KEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVL 358
Cdd:TIGR00362 215 KERTQEEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVL 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 359 ELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIAdANTMQISAATIMAATAEYFDTTVEELRGPGKTR 438
Cdd:TIGR00362 295 EFIAKNITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLR-AQKKEITIENIQKVVAKYYNIKVSDLKSKKRTR 373
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 500123058 439 ALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRI 501
Cdd:TIGR00362 374 NIVRPRQIAMYLAKELTDLSLPEIGKAFGgRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
168-470 |
2.09e-172 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 487.39 E-value: 2.09e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 168 LNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFI 247
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 248 NSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLI 327
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 328 TDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADAN 407
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 500123058 408 TmQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDH 470
Cdd:COG0593 241 K-EITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGgRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
168-386 |
5.32e-130 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 376.67 E-value: 5.32e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 168 LNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFI 247
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 248 NSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLI 327
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 500123058 328 TDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLN 386
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
167-501 |
4.49e-69 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 227.80 E-value: 4.49e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 167 SLNRRYTFDTFVIGASN----RFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNyAQRLFpGMRVKYVSTEEF 242
Cdd:PRK12422 103 ELDPLMTFANFLVTPENdlphRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVH-ALRES-GGKILYVRSELF 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 243 TNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRF 322
Cdd:PRK12422 181 TEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRF 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 323 EWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGAL----IRVtAFASLNKTPIDKALAEIV 398
Cdd:PRK12422 261 EWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALtllaKRV-AYKKLSHQLLYVDDIKAL 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 399 LRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQR 478
Cdd:PRK12422 340 LHDVLEAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVFSRDHSTVISSIR 419
|
330 340
....*....|....*....|....
gi 500123058 479 KILSEMAER-REVFDHVKELTTRI 501
Cdd:PRK12422 420 AISQKLEEDdRDISMAIQEITKRL 443
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
415-501 |
2.76e-32 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 118.77 E-value: 2.76e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 415 TIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDH 493
Cdd:cd06571 3 LIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGgRDHSTVLHAVRKIEELLEEDPELKED 82
|
....*...
gi 500123058 494 VKELTTRI 501
Cdd:cd06571 83 VEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
415-480 |
1.87e-30 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 112.88 E-value: 1.87e-30
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500123058 415 TIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKI 480
Cdd:pfam08299 3 KIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGgRDHSTVIHACKKI 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
204-376 |
7.57e-27 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 108.05 E-value: 7.57e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 204 LFIWGESGLGKTHLLHAAGNYAQRLfpGMRVKYVSTEEFTNDFINSLRDDRkvafkrsyrDVDVLLVDDIQFIEGKEGIQ 283
Cdd:TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQADPEVLEGLE---------QADLVCLDDVEAIAGQPEWQ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 284 EEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIAS 363
Cdd:TIGR03420 110 EALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLR 189
|
170
....*....|...
gi 500123058 364 SIERNIRELEGAL 376
Cdd:TIGR03420 190 HGSRDMGSLMALL 202
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
416-479 |
1.72e-25 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 99.12 E-value: 1.72e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 500123058 416 IMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAF-GRDHTTVMYAQRK 479
Cdd:smart00760 5 IIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFgGRDHSTVLHACRK 69
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
173-406 |
3.05e-19 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 86.57 E-value: 3.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 173 TFDTFVIGAsNR--FAHAAALAIAEAPARAYnplFIWGESGLGKTHLLHAAGNYAQRLfpGMRVKYVSTEEFTNDFINSL 250
Cdd:PRK08903 16 TFDNFVAGE-NAelVARLRELAAGPVADRFF---YLWGEAGSGRSHLLQALVADASYG--GRNARYLDAASPLLAFDFDP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 251 RddrkvafkrsyrdVDVLLVDDIQFIEGKEgiQEEFFHTFNTLH-NANKQIVISSDRPPKQLATLEDrLRTRFEWGLITD 329
Cdd:PRK08903 90 E-------------AELYAVDDVERLDDAQ--QIALFNLFNRVRaHGQGALLVAGPAAPLALPLRED-LRTRLGWGLVYE 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 500123058 330 VQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALaeivLRDLIADA 406
Cdd:PRK08903 154 LKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPL----LREMLAQP 226
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
204-393 |
1.57e-18 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 84.73 E-value: 1.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 204 LFIWGESGLGKTHLLHAAGNYAQRLfpGMRVKYVSTEeftndfinslrddrkvafKRSYRDVDVL-------LV--DDIQ 274
Cdd:PRK08084 48 IYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLD------------------KRAWFVPEVLegmeqlsLVciDNIE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 275 FIEGKEGIQEEFFHTFN-TLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAV 353
Cdd:PRK08084 108 CIAGDELWEMAIFDLYNrILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFEL 187
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 500123058 354 PDDVLELIASSIERNIRelegalirvTAFASLNKtpIDKA 393
Cdd:PRK08084 188 PEDVGRFLLKRLDREMR---------TLFMTLDQ--LDRA 216
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
199-326 |
2.47e-16 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 76.03 E-value: 2.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 199 RAYNPLFIWGESGLGKTHLLHAAGNYAQRlfPGMRVKYVSTEEFTNDFINS----LRDDRKVAFKRSYRDVDVLLVDDIQ 274
Cdd:cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAelfgHFLVRLLFELAEKAKPGVLFIDEID 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 500123058 275 FI-EGKEGIQEEFFHTFNTLHNAN---KQIVISSDRPPKQLA-TLEDRLRTRFEWGL 326
Cdd:cd00009 95 SLsRGAQNALLRVLETLNDLRIDRenvRVIGATNRPLLGDLDrALYDRLDIRIVIPL 151
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
202-328 |
9.68e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.00 E-value: 9.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 202 NPLFIWGESGLGKTHLLHAAGNYAQRlfPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRS---------------YRDVD 266
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500123058 267 VLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQ------IVISSDRPPKQLATLEDRLRTRFEWGLIT 328
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLLLLKSeknltvILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
419-480 |
6.21e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 54.01 E-value: 6.21e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 500123058 419 ATAEYFDTTVEELRGP-GKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKI 480
Cdd:PRK06030 31 LLALAFGVSGAEIASPlRGRREVSRIRQIAMYVAHVSLGWPMNEVALAFGRDRTTVGHACHTV 93
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
199-313 |
4.55e-08 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 54.02 E-value: 4.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 199 RAYNPLFIwGESGLGKTHLLHAAGNYAQRLfpGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEG 278
Cdd:COG1484 98 RGENLILL-GPPGTGKTHLAIALGHEACRA--GYRVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDELGYLPL 174
|
90 100 110
....*....|....*....|....*....|....*
gi 500123058 279 KEGIQEEFFHTFNTLHNaNKQIVISSDRPPKQLAT 313
Cdd:COG1484 175 DAEGAELLFELISDRYE-RRSTIITSNLPFSEWGE 208
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
204-314 |
2.34e-07 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 52.59 E-value: 2.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 204 LFIWGESGLGKTHLLHAAGNYAqrLFPGMRVKYVSTEEftndFINSLRDDRKVAFKRSY------RDVDVLLVDDIqfie 277
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTADE----LIEILREIRFNNDKELEevydllINCDLLIIDDL---- 255
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 500123058 278 GKEGIQE----EFFHTFNTLHNANKQIVISSDRPPKQLATL 314
Cdd:PRK06835 256 GTEKITEfsksELFNLINKRLLRQKKMIISTNLSLEELLKT 296
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
202-321 |
5.79e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 47.85 E-value: 5.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 202 NPLFIWGESGLGKTHLLHAAGNY--AQRLFPGMRVKYVstEEFT---NDFinSLRDDRKVAFKRsyrdVDVLLVDDI-QF 275
Cdd:PRK06921 118 NSIALLGQPGSGKTHLLTAAANElmRKKGVPVLYFPFV--EGFGdlkDDF--DLLEAKLNRMKK----VEVLFIDDLfKP 189
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 500123058 276 IEGKEGIQ----EEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTR 321
Cdd:PRK06921 190 VNGKPRATewqiEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSR 239
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
199-307 |
4.85e-03 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 38.58 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 199 RAYNPLFIwGESGLGKTHLLHAAGNYAQRlfPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEG 278
Cdd:pfam01695 91 RAQNVVLL-GPPGVGKTHLAIALGVEACR--AGYSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVLILDEWGYLPL 167
|
90 100
....*....|....*....|....*....
gi 500123058 279 KEGIQEEFFHTFNTLHNaNKQIVISSDRP 307
Cdd:pfam01695 168 DQAEANLLFQVISKRYE-HRSIILTSNLP 195
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
204-359 |
5.00e-03 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 38.85 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 204 LFIWGESGLGKTHLLHAAGNY-AQRLFPgmrVKYVSTEEFTNDF---INSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGK 279
Cdd:PRK08116 117 LLLWGSVGTGKTYLAACIANElIEKGVP---VIFVNFPQLLNRIkstYKSSGKEDENEIIRSLVNADLLILDDLGAERDT 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 280 EGIQEEFFHTFNTLHNANKQIVISSDRPPKQLAT-----LEDRLrtrfewglitdvqppeLETRIAIL------RKKAQM 348
Cdd:PRK08116 194 EWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNqygkrIYDRI----------------LEMCTPVEnegksyRKEIAK 257
|
170
....*....|.
gi 500123058 349 ERLAVPDDVLE 359
Cdd:PRK08116 258 EKLQRLKELLK 268
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
204-362 |
9.80e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 38.29 E-value: 9.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 204 LFIWGESGLGKT----HLLHAAGNYAQRLFPGMRVKYVSTEEFTNDF------INSLRDDRKV-----AFKRSYRDV--- 265
Cdd:COG1474 54 VLIYGPTGTGKTavakYVLEELEEEAEERGVDVRVVYVNCRQASTRYrvlsriLEELGSGEDIpstglSTDELFDRLyea 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500123058 266 -----DVLLV--DDIQFIEGKEGiqEEFFHTFNTLHNANKQ-----IVISSDrpPKQLATLEDRLRTRFewgLITDVQ-P 332
Cdd:COG1474 134 lderdGVLVVvlDEIDYLVDDEG--DDLLYQLLRANEELEGarvgvIGISND--LEFLENLDPRVKSSL---GEEEIVfP 206
|
170 180 190
....*....|....*....|....*....|....*.
gi 500123058 333 P----ELEtriAILRKKAQM--ERLAVPDDVLELIA 362
Cdd:COG1474 207 PydadELR---DILEDRAELafYDGVLSDEVIPLIA 239
|
|
| |
