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Conserved domains on  [gi|501454900|ref|WP_012478345|]
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MULTISPECIES: IS30-like element ISApl1 family transposase [Pseudomonadota]

Protein Classification

IS30 family transposase( domain architecture ID 11458135)

IS30 family transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0032196|GO:0003677
PubMed:  15469518|11774877

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
5-324 5.65e-134

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


:

Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 383.46  E-value: 5.65e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900   5 SYRHLTINEREKIMILLAQGKKQAEIAKALGRSSSTISRELKRHA-LESYSATNAQNSYLKHRQNSKAQRKLEQ-PEYFN 82
Cdd:COG2826    3 SYKHLTLEEREEIEALLKAGLSVREIARRLGRSPSTISRELKRNSgRRGYRAEGAQRLAEDRRRRPKRKRKLATtPELRA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900  83 LVQEKfLTENWSPEQISARLKLE-KSELSISYSTIYRGIYSGLFdigERKASRKLRHKGKTRHTKNHHEK-RGKIQISNH 160
Cdd:COG2826   83 YVEEK-LRKKWSPEQIAGRLKREdDPGMRVSHETIYRYIYAGGL---RKDLYRPLRRKRKRRRPRGRTRKrRGKIPDRRS 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900 161 LNDRPISAQNRSRFGHWEADTVLGKAGGACLLTLTERKSRFELVKKIPAKKAEAVQKAMIELLD---SHILRSITPDRGK 237
Cdd:COG2826  159 ISERPAEVEDRAEPGHWEGDLIIGKRGKSALLTLVERKSRFVILLKLPDKTAESVADALIRLLRklpAFLRKSITTDNGK 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900 238 EFAQHRLVTEALGVEFYFPEPHQPWTRGTNENTNGLLREYFPKHQDINQWSEVDIQQVINKLNLRPRKCLGWKTPYEVYF 317
Cdd:COG2826  239 EFADHKEIEAALGIKVYFADPYSPWQRGTNENTNGLLRQYFPKGTDFSTVTQEELDAIADRLNNRPRKCLGYKTPAEVFA 318


                 ....*..
gi 501454900 318 KKSLHLV 324
Cdd:COG2826  319 EELAALA 325
 
Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
5-324 5.65e-134

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 383.46  E-value: 5.65e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900   5 SYRHLTINEREKIMILLAQGKKQAEIAKALGRSSSTISRELKRHA-LESYSATNAQNSYLKHRQNSKAQRKLEQ-PEYFN 82
Cdd:COG2826    3 SYKHLTLEEREEIEALLKAGLSVREIARRLGRSPSTISRELKRNSgRRGYRAEGAQRLAEDRRRRPKRKRKLATtPELRA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900  83 LVQEKfLTENWSPEQISARLKLE-KSELSISYSTIYRGIYSGLFdigERKASRKLRHKGKTRHTKNHHEK-RGKIQISNH 160
Cdd:COG2826   83 YVEEK-LRKKWSPEQIAGRLKREdDPGMRVSHETIYRYIYAGGL---RKDLYRPLRRKRKRRRPRGRTRKrRGKIPDRRS 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900 161 LNDRPISAQNRSRFGHWEADTVLGKAGGACLLTLTERKSRFELVKKIPAKKAEAVQKAMIELLD---SHILRSITPDRGK 237
Cdd:COG2826  159 ISERPAEVEDRAEPGHWEGDLIIGKRGKSALLTLVERKSRFVILLKLPDKTAESVADALIRLLRklpAFLRKSITTDNGK 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900 238 EFAQHRLVTEALGVEFYFPEPHQPWTRGTNENTNGLLREYFPKHQDINQWSEVDIQQVINKLNLRPRKCLGWKTPYEVYF 317
Cdd:COG2826  239 EFADHKEIEAALGIKVYFADPYSPWQRGTNENTNGLLRQYFPKGTDFSTVTQEELDAIADRLNNRPRKCLGYKTPAEVFA 318


                 ....*..
gi 501454900 318 KKSLHLV 324
Cdd:COG2826  319 EELAALA 325
transpos_IS30 NF033563
IS30 family transposase;
39-305 8.97e-121

IS30 family transposase;


Pssm-ID: 468088 [Multi-domain]  Cd Length: 267  Bit Score: 348.05  E-value: 8.97e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900  39 STISRELKRH-ALESYSATNAQNSYLKHRQNSKAQRKLeQPEYFNLVqEKFLTENWSPEQISARLKLEKSELSISYSTIY 117
Cdd:NF033563   1 STISREIKRNsGLQGYKADQAQRVYEKRRKRCGRKLKL-SPELIEYI-EHLLRLGWSPEQIAGRLKREEKEVSVSHETIY 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900 118 RGIYSGLFDIGerKASRKLRHKGKTRHTKNHHEKRGKIQISNHLNDRPISAQNRSRFGHWEADTVLGKAGGACLLTLTER 197
Cdd:NF033563  79 RYIYAGKLGGG--KLYRHLRRGGKRRRPRGGKDRRGKIPDGRSIEERPEEVEDRSRFGHWEGDTILGKKHKSALLTLVER 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900 198 KSRFELVKKIPAKKAEAVQKAMIELLDS---HILRSITPDRGKEFAQHRLVTEALGVEFYFPEPHQPWTRGTNENTNGLL 274
Cdd:NF033563 157 KSRFVILVKLPDKTAESVNKALIKLLKPlpkHLRKSITADNGKEFARHSEIEEALGIDVYFADPYSPWQRGTNENTNGLL 236

                        250       260       270
                 ....*....|....*....|....*....|.
gi 501454900 275 REYFPKHQDINQWSEVDIQQVINKLNLRPRK 305
Cdd:NF033563 237 RQYLPKGTDLSEVSQEELDRIENWLNNRPRK 267
HTH_38 pfam13936
Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is ...
 5-48 2.89e-14

Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.


Pssm-ID: 433591 [Multi-domain]  Cd Length: 44  Bit Score: 66.00  E-value: 2.89e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 501454900    5 SYRHLTINEREKIMILLAQGKKQAEIAKALGRSSSTISRELKRH 48
Cdd:pfam13936   1 KGKHLSLEEREEIARLLAEGLSLREIARRLGRSPSTISRELRRN 44
transpos_IS630 NF033545
IS630 family transposase;
13-118 3.77e-07

IS630 family transposase;


Pssm-ID: 468076 [Multi-domain]  Cd Length: 298  Bit Score: 50.72  E-value: 3.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900  13 EREKIMILLAQGKKQAEIAKALGRSSSTISRELKRHALESY-SATNAQNSYLKHRQNSKAQRKL------EQPEYFNLvq 85
Cdd:NF033545   1 RRARILLLAAEGLSITEIAERLGVSRSTVYRWLKRFNEGGLeGLLDKPRPGRPRKLLSEQQAELlallleEPPEGAGH-- 78

                         90       100       110
                 ....*....|....*....|....*....|...
gi 501454900  86 ekfltenWSPEQISARLKlEKSELSISYSTIYR 118
Cdd:NF033545  79 -------WTLRELAALLE-EEFGVEYSRSTVRR 103
HTH_LUXR smart00421
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
 7-47 1.35e-03

helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon


Pssm-ID: 197715 [Multi-domain]  Cd Length: 58  Bit Score: 36.35  E-value: 1.35e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 501454900     7 RHLTINEREkIMILLAQGKKQAEIAKALGRSSSTISRELKR 47
Cdd:smart00421   2 ASLTPRERE-VLRLLAEGLTNKEIAERLGISEKTVKTHLSN 41
 
Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
5-324 5.65e-134

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 383.46  E-value: 5.65e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900   5 SYRHLTINEREKIMILLAQGKKQAEIAKALGRSSSTISRELKRHA-LESYSATNAQNSYLKHRQNSKAQRKLEQ-PEYFN 82
Cdd:COG2826    3 SYKHLTLEEREEIEALLKAGLSVREIARRLGRSPSTISRELKRNSgRRGYRAEGAQRLAEDRRRRPKRKRKLATtPELRA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900  83 LVQEKfLTENWSPEQISARLKLE-KSELSISYSTIYRGIYSGLFdigERKASRKLRHKGKTRHTKNHHEK-RGKIQISNH 160
Cdd:COG2826   83 YVEEK-LRKKWSPEQIAGRLKREdDPGMRVSHETIYRYIYAGGL---RKDLYRPLRRKRKRRRPRGRTRKrRGKIPDRRS 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900 161 LNDRPISAQNRSRFGHWEADTVLGKAGGACLLTLTERKSRFELVKKIPAKKAEAVQKAMIELLD---SHILRSITPDRGK 237
Cdd:COG2826  159 ISERPAEVEDRAEPGHWEGDLIIGKRGKSALLTLVERKSRFVILLKLPDKTAESVADALIRLLRklpAFLRKSITTDNGK 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900 238 EFAQHRLVTEALGVEFYFPEPHQPWTRGTNENTNGLLREYFPKHQDINQWSEVDIQQVINKLNLRPRKCLGWKTPYEVYF 317
Cdd:COG2826  239 EFADHKEIEAALGIKVYFADPYSPWQRGTNENTNGLLRQYFPKGTDFSTVTQEELDAIADRLNNRPRKCLGYKTPAEVFA 318


                 ....*..
gi 501454900 318 KKSLHLV 324
Cdd:COG2826  319 EELAALA 325
transpos_IS30 NF033563
IS30 family transposase;
39-305 8.97e-121

IS30 family transposase;


Pssm-ID: 468088 [Multi-domain]  Cd Length: 267  Bit Score: 348.05  E-value: 8.97e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900  39 STISRELKRH-ALESYSATNAQNSYLKHRQNSKAQRKLeQPEYFNLVqEKFLTENWSPEQISARLKLEKSELSISYSTIY 117
Cdd:NF033563   1 STISREIKRNsGLQGYKADQAQRVYEKRRKRCGRKLKL-SPELIEYI-EHLLRLGWSPEQIAGRLKREEKEVSVSHETIY 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900 118 RGIYSGLFDIGerKASRKLRHKGKTRHTKNHHEKRGKIQISNHLNDRPISAQNRSRFGHWEADTVLGKAGGACLLTLTER 197
Cdd:NF033563  79 RYIYAGKLGGG--KLYRHLRRGGKRRRPRGGKDRRGKIPDGRSIEERPEEVEDRSRFGHWEGDTILGKKHKSALLTLVER 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900 198 KSRFELVKKIPAKKAEAVQKAMIELLDS---HILRSITPDRGKEFAQHRLVTEALGVEFYFPEPHQPWTRGTNENTNGLL 274
Cdd:NF033563 157 KSRFVILVKLPDKTAESVNKALIKLLKPlpkHLRKSITADNGKEFARHSEIEEALGIDVYFADPYSPWQRGTNENTNGLL 236

                        250       260       270
                 ....*....|....*....|....*....|.
gi 501454900 275 REYFPKHQDINQWSEVDIQQVINKLNLRPRK 305
Cdd:NF033563 237 RQYLPKGTDLSEVSQEELDRIENWLNNRPRK 267
HTH_38 pfam13936
Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is ...
 5-48 2.89e-14

Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.


Pssm-ID: 433591 [Multi-domain]  Cd Length: 44  Bit Score: 66.00  E-value: 2.89e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 501454900    5 SYRHLTINEREKIMILLAQGKKQAEIAKALGRSSSTISRELKRH 48
Cdd:pfam13936   1 KGKHLSLEEREEIARLLAEGLSLREIARRLGRSPSTISRELRRN 44
transpos_IS630 NF033545
IS630 family transposase;
13-118 3.77e-07

IS630 family transposase;


Pssm-ID: 468076 [Multi-domain]  Cd Length: 298  Bit Score: 50.72  E-value: 3.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900  13 EREKIMILLAQGKKQAEIAKALGRSSSTISRELKRHALESY-SATNAQNSYLKHRQNSKAQRKL------EQPEYFNLvq 85
Cdd:NF033545   1 RRARILLLAAEGLSITEIAERLGVSRSTVYRWLKRFNEGGLeGLLDKPRPGRPRKLLSEQQAELlallleEPPEGAGH-- 78

                         90       100       110
                 ....*....|....*....|....*....|...
gi 501454900  86 ekfltenWSPEQISARLKlEKSELSISYSTIYR 118
Cdd:NF033545  79 -------WTLRELAALLE-EEFGVEYSRSTVRR 103
Csa3 COG3415
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ...
 13-307 7.71e-07

CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system


Pssm-ID: 442641 [Multi-domain]  Cd Length: 325  Bit Score: 49.85  E-value: 7.71e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900  13 EREKIMILLAQGKKQAEIAKALGRSSSTISRELKRhalesYSATNAQNSYLKHRQNSKAQRKLEQPEYF-NLVQEKFLTE 91
Cdd:COG3415   27 RRLRAVLLLAEGLSVREIAERLGVSRSTVYRWLKR-----YREGGLAGLKDRPRGGRPSKLSDEQRERLlELLREKSPDQ 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900  92 --NWSPEQISARLKlEKSELSISYSTIYR-----GIYsglfdigerkasrklRHKGKTRHTKNHHEKRGK-IQISNHLND 163
Cdd:COG3415  102 gsRWTLAELAELLE-EEFGVEVSPSTVRRllkrlGLS---------------YKKPRPRAPKQDPEAVEKfKKELEALLA 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501454900 164 RPISAQNRSRFGHWEADTVLGKAGGACLLTLTERKSRFELVKKIPAKKAEAVQKAMIELLDSHILRSITPDRGKEFAQHR 243
Cdd:COG3415  166 KPAKAEVAGVDEGDEIGALRRAAGGRLLAPGGRVRRTGASVRRGRALLFLALGLALGLRIGLTIDALLAGALLLFLRLLA 245

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501454900 244 LVTEALGVEFYFPEPHQPWTRGTNENTNGLLREYFPKHQDINQWSEVDIQQVINKLNLRPRKCL 307
Cdd:COG3415  246 ERALALLLLLLLLLLLSPSKAVARAAKLLKLELLRLLFLPPSASLLLALEALLRELRERNLLRL 309
HTH_23 pfam13384
Homeodomain-like domain;
13-47 9.55e-05

Homeodomain-like domain;


Pssm-ID: 433164 [Multi-domain]  Cd Length: 50  Bit Score: 39.56  E-value: 9.55e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 501454900   13 EREKIMILLAQGKKQAEIAKALGRSSSTISRELKR 47
Cdd:pfam13384   6 RRARALLLLAEGLSVKEIAELLGVSRRTVYRWLKR 40
CsgD COG2771
DNA-binding transcriptional regulator, CsgD family [Transcription];
8-47 1.21e-03

DNA-binding transcriptional regulator, CsgD family [Transcription];


Pssm-ID: 442052 [Multi-domain]  Cd Length: 188  Bit Score: 39.35  E-value: 1.21e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 501454900   8 HLTINEREkIMILLAQGKKQAEIAKALGRSSSTISRELKR 47
Cdd:COG2771  127 GLTPRERE-VLRLLAEGLTLKEIARILGISERTVRTHLKR 165
HTH_LUXR smart00421
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
 7-47 1.35e-03

helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon


Pssm-ID: 197715 [Multi-domain]  Cd Length: 58  Bit Score: 36.35  E-value: 1.35e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 501454900     7 RHLTINEREkIMILLAQGKKQAEIAKALGRSSSTISRELKR 47
Cdd:smart00421   2 ASLTPRERE-VLRLLAEGLTNKEIAERLGISEKTVKTHLSN 41
CitB COG2197
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ...
 7-47 1.48e-03

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 441799 [Multi-domain]  Cd Length: 131  Bit Score: 37.95  E-value: 1.48e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 501454900   7 RHLTINEREkIMILLAQGKKQAEIAKALGRSSSTISRELKR 47
Cdd:COG2197   68 RLLTPRERE-VLRLLAEGLSNKEIAERLGISERTVKTHVSN 107
YerC COG4496
Predicted DNA-binding transcriptional regulator YerC, contains ArsR-like HTH domain [General ...
 9-43 2.45e-03

Predicted DNA-binding transcriptional regulator YerC, contains ArsR-like HTH domain [General function prediction only];


Pssm-ID: 443584  Cd Length: 92  Bit Score: 36.67  E-value: 2.45e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 501454900   9 LTINERE------KIMILLAQGKKQAEIAKALGRSSSTISR 43
Cdd:COG4496   34 CTPAELKalaqrlEVARLLREGKTYREIAEETGASTATISR 74
HTH_28 pfam13518
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ...
 13-47 2.77e-03

Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.


Pssm-ID: 463908 [Multi-domain]  Cd Length: 52  Bit Score: 35.26  E-value: 2.77e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 501454900   13 EREKIMILLAQGKKQAEIAKALGRSSSTISRELKR 47
Cdd:pfam13518   1 ERLKIVLLALEGESIKEAARLFGISRSTVYRWIRR 35
HTH_32 pfam13565
Homeodomain-like domain;
40-118 4.08e-03

Homeodomain-like domain;


Pssm-ID: 463923 [Multi-domain]  Cd Length: 73  Bit Score: 35.35  E-value: 4.08e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 501454900   40 TISRELKRHALESYSAtnaqnsyLKHRQNSKAQRKLEQPEYFNLVQEKFLTENWSPEQISARLKlEKSELSISYSTIYR 118
Cdd:pfam13565   1 TVYRWRKRYNEEGLEG-------LEDRPRRGRPRKLTDEQEARLLALLCEEPRWSPRLLAERLE-EEFGVKVSRSTVRR 71
DeoR COG2390
DNA-binding transcriptional regulator LsrR, DeoR family [Transcription];
23-47 4.62e-03

DNA-binding transcriptional regulator LsrR, DeoR family [Transcription];


Pssm-ID: 441955 [Multi-domain]  Cd Length: 301  Bit Score: 38.19  E-value: 4.62e-03
                         10        20
                 ....*....|....*....|....*
gi 501454900  23 QGKKQAEIAKALGRSSSTISRELKR 47
Cdd:COG2390    9 EGLTQREIAERLGISRRTVSRLLAE 33
COG2512 COG2512
Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain ...
 2-47 6.06e-03

Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain [General function prediction only];


Pssm-ID: 442002 [Multi-domain]  Cd Length: 80  Bit Score: 35.27  E-value: 6.06e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 501454900   2 MSTSYRHLTINEREKIMILLAQGK--KQAEIAKALGRSSSTISRELKR 47
Cdd:COG2512    6 ALLLYPELLEDERRVLELLRENGGrmTQSEIVKETGWSKSKVSRLLSR 53
KorB pfam08535
KorB domain; This family consists of several KorB transcriptional repressor proteins. The korB ...
 22-46 8.36e-03

KorB domain; This family consists of several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon. This domain includes the DNA-binding HTH motif.


Pssm-ID: 400718  Cd Length: 88  Bit Score: 35.15  E-value: 8.36e-03
                          10        20
                  ....*....|....*....|....*
gi 501454900   22 AQGKKQAEIAKALGRSSSTISRELK 46
Cdd:pfam08535   1 NKGWKQADIAKALGRSKQFVSLYLA 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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