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Conserved domains on  [gi|502253517|ref|WP_012742791|]
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MULTISPECIES: 50S ribosomal protein L35 [Agathobacter]

Protein Classification

50S ribosomal protein L35( domain architecture ID 10000967)

50S ribosomal protein L35 is involved in signal peptide recognition

Gene Symbol:  rpmI
Gene Ontology:  GO:0006412|GO:0003735|GO:0015934
PubMed:  24524803
SCOP:  4003406

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-64 9.49e-19

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440060  Cd Length: 64  Bit Score: 71.23  E-value: 9.49e-19
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502253517  1 MPKMKTSRAAAKRFKVTGTGKLKRNKAYKRHILTKKTTKTKRNLRKATMTDETNVKNMKKILPY 64
Cdd:COG0291   1 MPKMKTHSGAKKRFKVTGSGKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLLPY 64
 
Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-64 9.49e-19

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440060  Cd Length: 64  Bit Score: 71.23  E-value: 9.49e-19
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502253517  1 MPKMKTSRAAAKRFKVTGTGKLKRNKAYKRHILTKKTTKTKRNLRKATMTDETNVKNMKKILPY 64
Cdd:COG0291   1 MPKMKTHSGAKKRFKVTGSGKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLLPY 64
Ribosomal_L35p pfam01632
Ribosomal protein L35;
2-62 1.05e-14

Ribosomal protein L35;


Pssm-ID: 460273  Cd Length: 61  Bit Score: 61.23  E-value: 1.05e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502253517   2 PKMKTSRAAAKRFKVTGTGKLKRNKAYKRHILTKKTTKTKRNLRKATMTDETNVKNMKKIL 62
Cdd:pfam01632  1 PKMKTHKGAAKRFKVTGSGKIKRRKAGKRHILTKKSTKRKRRLRKTVLVSKADAKRVKKLL 61
rpmI_bact TIGR00001
ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is ...
 2-64 1.88e-13

ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272847  Cd Length: 63  Bit Score: 58.06  E-value: 1.88e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502253517   2 PKMKTSRAAAKRFKVTGTGKLKRNKAYKRHILTKKTTKTKRNLRKATMTDETNVKNMKKILPY 64
Cdd:TIGR00001  1 PKMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRQLRKKAVVSKGDLKRVKLLLPY 63
rpl35 CHL00103
ribosomal protein L35
 1-65 1.12e-09

ribosomal protein L35


Pssm-ID: 214367  Cd Length: 65  Bit Score: 48.54  E-value: 1.12e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502253517  1 MPKMKTSRAAAKRFKVTGTGKLKRNKAYKRHILTKKTTKTKRNLRKATMTDETNVKNMKKILPYM 65
Cdd:CHL00103  1 MPKLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCVSKGDSKSIKLMLPYL 65
 
Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-64 9.49e-19

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440060  Cd Length: 64  Bit Score: 71.23  E-value: 9.49e-19
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 502253517  1 MPKMKTSRAAAKRFKVTGTGKLKRNKAYKRHILTKKTTKTKRNLRKATMTDETNVKNMKKILPY 64
Cdd:COG0291   1 MPKMKTHSGAKKRFKVTGSGKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLLPY 64
Ribosomal_L35p pfam01632
Ribosomal protein L35;
2-62 1.05e-14

Ribosomal protein L35;


Pssm-ID: 460273  Cd Length: 61  Bit Score: 61.23  E-value: 1.05e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 502253517   2 PKMKTSRAAAKRFKVTGTGKLKRNKAYKRHILTKKTTKTKRNLRKATMTDETNVKNMKKIL 62
Cdd:pfam01632  1 PKMKTHKGAAKRFKVTGSGKIKRRKAGKRHILTKKSTKRKRRLRKTVLVSKADAKRVKKLL 61
rpmI_bact TIGR00001
ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is ...
 2-64 1.88e-13

ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272847  Cd Length: 63  Bit Score: 58.06  E-value: 1.88e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 502253517   2 PKMKTSRAAAKRFKVTGTGKLKRNKAYKRHILTKKTTKTKRNLRKATMTDETNVKNMKKILPY 64
Cdd:TIGR00001  1 PKMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRQLRKKAVVSKGDLKRVKLLLPY 63
rpl35 CHL00103
ribosomal protein L35
 1-65 1.12e-09

ribosomal protein L35


Pssm-ID: 214367  Cd Length: 65  Bit Score: 48.54  E-value: 1.12e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 502253517  1 MPKMKTSRAAAKRFKVTGTGKLKRNKAYKRHILTKKTTKTKRNLRKATMTDETNVKNMKKILPYM 65
Cdd:CHL00103  1 MPKLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCVSKGDSKSIKLMLPYL 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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