NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|503151549|ref|WP_013386210|]
View 

DUF4046 domain-containing protein [Paenibacillus polymyxa]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 15-104 8.17e-52

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


:

Pssm-ID: 404192  Cd Length: 90  Bit Score: 172.13  E-value: 8.17e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549   15 IIDIYDAVIEGKLAILPRNFWGKYEEEVQHRLKLCFRYLVLQKLKIKPHEIRLRVQKPFLIKYKLFNAVYQRQSKGLREL 94
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80

                          90
                  ....*....|
gi 503151549   95 LMHIFPEIGY 104
Cdd:pfam13255  81 LIDIFPEIGY 90
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 398-487 7.50e-50

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


:

Pssm-ID: 404192  Cd Length: 90  Bit Score: 167.12  E-value: 7.50e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  398 IIEVFDAAIEGESAQWPRGFWGKHEEEVQHRLQLCLRYLVLEKLKIKPHEIRLRVQKPFLVKYKLDYVVYQRQSKRLQEL 477
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80

                          90
                  ....*....|
gi 503151549  478 LSDIFPEIEY 487
Cdd:pfam13255  81 LIDIFPEIGY 90
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 116-205 1.27e-49

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


:

Pssm-ID: 404192  Cd Length: 90  Bit Score: 166.35  E-value: 1.27e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  116 IINIYDAALEGRLAQFPQGFWGNPEEEVQHRLKLCLRYLVLEKLKIPPHEILLEVTWLFLSKYKLNYAVYQLQSKGLQEL 195
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80

                          90
                  ....*....|
gi 503151549  196 LIDVFPEIEF 205
Cdd:pfam13255  81 LIDIFPEIGY 90
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 492-580 1.62e-49

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


:

Pssm-ID: 404192  Cd Length: 90  Bit Score: 166.35  E-value: 1.62e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  492 IINMYDAVIEGRLAQFPHGFWGKEEEEVQHRLKLCLRHVVLQKLNMEPQEILSEVKTSFLMKYKLFHCVYERQTKGLDEL 571
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80


                  ....*....
gi 503151549  572 LKEAFPEID 580
Cdd:pfam13255  81 LIDIFPEIG 89
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 307-393 4.87e-49

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


:

Pssm-ID: 404192  Cd Length: 90  Bit Score: 164.81  E-value: 4.87e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  307 VYDAAIEGKLAQLPNGFWGKHEEEVQHRLQLCLRYLVLEKLKIKPHEILLRVQKPFLVKYKLDYVVYQRQSKGLRELLMN 386
Cdd:pfam13255   4 IYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTELLID 83


                  ....*..
gi 503151549  387 IFPEIEF 393
Cdd:pfam13255  84 IFPEIGY 90
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 210-295 1.90e-46

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


:

Pssm-ID: 404192  Cd Length: 90  Bit Score: 157.87  E-value: 1.90e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  210 IINLYNAAIEGKLTRFPRGFWGNHEEEVQHRLKLCLRYLVLEKLKIKPENILLRVQQPFLMKYKLHQVVYKRQSKGLQEL 289
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80


                  ....*.
gi 503151549  290 LMHIFP 295
Cdd:pfam13255  81 LIDIFP 86
 
Name Accession Description Interval E-value
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 15-104 8.17e-52

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 172.13  E-value: 8.17e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549   15 IIDIYDAVIEGKLAILPRNFWGKYEEEVQHRLKLCFRYLVLQKLKIKPHEIRLRVQKPFLIKYKLFNAVYQRQSKGLREL 94
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80

                          90
                  ....*....|
gi 503151549   95 LMHIFPEIGY 104
Cdd:pfam13255  81 LIDIFPEIGY 90
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 398-487 7.50e-50

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 167.12  E-value: 7.50e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  398 IIEVFDAAIEGESAQWPRGFWGKHEEEVQHRLQLCLRYLVLEKLKIKPHEIRLRVQKPFLVKYKLDYVVYQRQSKRLQEL 477
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80

                          90
                  ....*....|
gi 503151549  478 LSDIFPEIEY 487
Cdd:pfam13255  81 LIDIFPEIGY 90
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 116-205 1.27e-49

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 166.35  E-value: 1.27e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  116 IINIYDAALEGRLAQFPQGFWGNPEEEVQHRLKLCLRYLVLEKLKIPPHEILLEVTWLFLSKYKLNYAVYQLQSKGLQEL 195
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80

                          90
                  ....*....|
gi 503151549  196 LIDVFPEIEF 205
Cdd:pfam13255  81 LIDIFPEIGY 90
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 492-580 1.62e-49

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 166.35  E-value: 1.62e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  492 IINMYDAVIEGRLAQFPHGFWGKEEEEVQHRLKLCLRHVVLQKLNMEPQEILSEVKTSFLMKYKLFHCVYERQTKGLDEL 571
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80


                  ....*....
gi 503151549  572 LKEAFPEID 580
Cdd:pfam13255  81 LIDIFPEIG 89
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 307-393 4.87e-49

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 164.81  E-value: 4.87e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  307 VYDAAIEGKLAQLPNGFWGKHEEEVQHRLQLCLRYLVLEKLKIKPHEILLRVQKPFLVKYKLDYVVYQRQSKGLRELLMN 386
Cdd:pfam13255   4 IYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTELLID 83


                  ....*..
gi 503151549  387 IFPEIEF 393
Cdd:pfam13255  84 IFPEIGY 90
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 210-295 1.90e-46

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 157.87  E-value: 1.90e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  210 IINLYNAAIEGKLTRFPRGFWGNHEEEVQHRLKLCLRYLVLEKLKIKPENILLRVQQPFLMKYKLHQVVYKRQSKGLQEL 289
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80


                  ....*.
gi 503151549  290 LMHIFP 295
Cdd:pfam13255  81 LIDIFP 86
 
Name Accession Description Interval E-value
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 15-104 8.17e-52

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 172.13  E-value: 8.17e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549   15 IIDIYDAVIEGKLAILPRNFWGKYEEEVQHRLKLCFRYLVLQKLKIKPHEIRLRVQKPFLIKYKLFNAVYQRQSKGLREL 94
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80

                          90
                  ....*....|
gi 503151549   95 LMHIFPEIGY 104
Cdd:pfam13255  81 LIDIFPEIGY 90
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 398-487 7.50e-50

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 167.12  E-value: 7.50e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  398 IIEVFDAAIEGESAQWPRGFWGKHEEEVQHRLQLCLRYLVLEKLKIKPHEIRLRVQKPFLVKYKLDYVVYQRQSKRLQEL 477
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80

                          90
                  ....*....|
gi 503151549  478 LSDIFPEIEY 487
Cdd:pfam13255  81 LIDIFPEIGY 90
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 116-205 1.27e-49

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 166.35  E-value: 1.27e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  116 IINIYDAALEGRLAQFPQGFWGNPEEEVQHRLKLCLRYLVLEKLKIPPHEILLEVTWLFLSKYKLNYAVYQLQSKGLQEL 195
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80

                          90
                  ....*....|
gi 503151549  196 LIDVFPEIEF 205
Cdd:pfam13255  81 LIDIFPEIGY 90
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 492-580 1.62e-49

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 166.35  E-value: 1.62e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  492 IINMYDAVIEGRLAQFPHGFWGKEEEEVQHRLKLCLRHVVLQKLNMEPQEILSEVKTSFLMKYKLFHCVYERQTKGLDEL 571
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80


                  ....*....
gi 503151549  572 LKEAFPEID 580
Cdd:pfam13255  81 LIDIFPEIG 89
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 307-393 4.87e-49

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 164.81  E-value: 4.87e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  307 VYDAAIEGKLAQLPNGFWGKHEEEVQHRLQLCLRYLVLEKLKIKPHEILLRVQKPFLVKYKLDYVVYQRQSKGLRELLMN 386
Cdd:pfam13255   4 IYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTELLID 83


                  ....*..
gi 503151549  387 IFPEIEF 393
Cdd:pfam13255  84 IFPEIGY 90
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 210-295 1.90e-46

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 157.87  E-value: 1.90e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503151549  210 IINLYNAAIEGKLTRFPRGFWGNHEEEVQHRLKLCLRYLVLEKLKIKPENILLRVQQPFLMKYKLHQVVYKRQSKGLQEL 289
Cdd:pfam13255   1 IINIYDAAIEGKLAQLPRGFWGNHEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYAVYQRQSKGLTEL 80


                  ....*.
gi 503151549  290 LMHIFP 295
Cdd:pfam13255  81 LIDIFP 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH