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Conserved domains on  [gi|503492706|ref|WP_013727367|]
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DUF1836 domain-containing protein [Lentilactobacillus buchneri]

Protein Classification

DUF1836 domain-containing protein( domain architecture ID 10556141)

DUF1836 domain-containing protein belongs to the helix-turn-helix (HTH) transcription regulator MerR superfamily and may bind DNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1836 pfam08876
Domain of unknown function (DUF1836); This family of proteins are functionally uncharacterized.
 13-109 8.76e-31

Domain of unknown function (DUF1836); This family of proteins are functionally uncharacterized.


:

Pssm-ID: 430279  Cd Length: 102  Bit Score: 107.35  E-value: 8.76e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503492706   13 PMWEELPAFSLHLDQLLDLTNEYLEPIIGDKITKTMLHNYFKAKILVPPVKKKYQRTQLAGAIVVGLLKNIFTLNEVKAG 92
Cdd:pfam08876   1 PKWEELPNIDLYMDQVITLINDKLEPLDDKILTKTMINNYVKNKLIPPPKKKKYSKEQIALLIIIYYLKSVLSIDEIKKG 80

                          90       100
                  ....*....|....*....|..
gi 503492706   93 LITLLGNGT-----PKTGYNNF 109
Cdd:pfam08876  81 LSLATNTINdreisLEEAYDYF 102
 
Name Accession Description Interval E-value
DUF1836 pfam08876
Domain of unknown function (DUF1836); This family of proteins are functionally uncharacterized.
 13-109 8.76e-31

Domain of unknown function (DUF1836); This family of proteins are functionally uncharacterized.


Pssm-ID: 430279  Cd Length: 102  Bit Score: 107.35  E-value: 8.76e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503492706   13 PMWEELPAFSLHLDQLLDLTNEYLEPIIGDKITKTMLHNYFKAKILVPPVKKKYQRTQLAGAIVVGLLKNIFTLNEVKAG 92
Cdd:pfam08876   1 PKWEELPNIDLYMDQVITLINDKLEPLDDKILTKTMINNYVKNKLIPPPKKKKYSKEQIALLIIIYYLKSVLSIDEIKKG 80

                          90       100
                  ....*....|....*....|..
gi 503492706   93 LITLLGNGT-----PKTGYNNF 109
Cdd:pfam08876  81 LSLATNTINdreisLEEAYDYF 102
 
Name Accession Description Interval E-value
DUF1836 pfam08876
Domain of unknown function (DUF1836); This family of proteins are functionally uncharacterized.
 13-109 8.76e-31

Domain of unknown function (DUF1836); This family of proteins are functionally uncharacterized.


Pssm-ID: 430279  Cd Length: 102  Bit Score: 107.35  E-value: 8.76e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503492706   13 PMWEELPAFSLHLDQLLDLTNEYLEPIIGDKITKTMLHNYFKAKILVPPVKKKYQRTQLAGAIVVGLLKNIFTLNEVKAG 92
Cdd:pfam08876   1 PKWEELPNIDLYMDQVITLINDKLEPLDDKILTKTMINNYVKNKLIPPPKKKKYSKEQIALLIIIYYLKSVLSIDEIKKG 80

                          90       100
                  ....*....|....*....|..
gi 503492706   93 LITLLGNGT-----PKTGYNNF 109
Cdd:pfam08876  81 LSLATNTINdreisLEEAYDYF 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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