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Conserved domains on  [gi|503674327|ref|WP_013908403|]
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flagellar basal body rod protein FlgB [Thermodesulfatator indicus]

Protein Classification

flagellar basal body rod protein FlgB( domain architecture ID 11448558)

flagellar basal body rod protein FlgB forms, together with FlgC and FlgF, the proximal portion of the central rod at the core of the flagellar organelle's basal body

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
4-133 2.66e-47

Flagellar basal body rod protein FlgB [Cell motility];


:

Pssm-ID: 441420  Cd Length: 135  Bit Score: 148.90  E-value: 2.66e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327   4 AKLFGKTWQVVSEALKVRLMRHEVIAANIANVDTPGYSRKDIPFEKVMAAYLKGSP---PLKTTNPRHIkPGLAPDGGIP 80
Cdd:COG1815    2 SILFDKTFGLLEKALDLRSLRQEVIASNIANADTPGYKARDVDFEAALKAALGGGSaglALATTNPRHI-PGSAGSSVSP 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 503674327  81 LVEEEPPVEGTP--NNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAITEGG 133
Cdd:COG1815   81 EVLYRTPTQPSLdgNTVDLDEEMAKLAENALQYQAALTFLNKKFSMLKTAIKGGR 135
 
Name Accession Description Interval E-value
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
4-133 2.66e-47

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 148.90  E-value: 2.66e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327   4 AKLFGKTWQVVSEALKVRLMRHEVIAANIANVDTPGYSRKDIPFEKVMAAYLKGSP---PLKTTNPRHIkPGLAPDGGIP 80
Cdd:COG1815    2 SILFDKTFGLLEKALDLRSLRQEVIASNIANADTPGYKARDVDFEAALKAALGGGSaglALATTNPRHI-PGSAGSSVSP 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 503674327  81 LVEEEPPVEGTP--NNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAITEGG 133
Cdd:COG1815   81 EVLYRTPTQPSLdgNTVDLDEEMAKLAENALQYQAALTFLNKKFSMLKTAIKGGR 135
FlgB TIGR01396
flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components ...
 7-130 2.85e-32

flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components of bacterial flagella that share a domain described by pfam00460. FlgB is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 273598 [Multi-domain]  Cd Length: 131  Bit Score: 110.56  E-value: 2.85e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327    7 FGKTWQVVSEALKVRLMRHEVIAANIANVDTPGYSRKDIPFEKVMAAYL------KGSPPLKTTNPRHIKPGLAPDGGIP 80
Cdd:TIGR01396   1 FSNAFGLLQQALDVRSLRQEVIANNIANVDTPGYKAKDVSFEAELKKALdnernsKLTLARTDTRPRHLNAQDSNSVEPS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 503674327   81 LVEEEPP-VEGTPNNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAIT 130
Cdd:TIGR01396  81 LQYDYTTqVKNDGNNVDIDQEMAELAQNQMHYQALTQFLNGKIKGLNYVLR 131
flgB PRK12621
flagellar basal body rod protein FlgB; Provisional
 6-134 3.52e-21

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 171613  Cd Length: 136  Bit Score: 82.49  E-value: 3.52e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327   6 LFGKTWQVVSEALKVRLMRHEVIAANIANVDTPGYSRKDIPFEKVM--AAYLKGSPPLKTTNPRHIKPGLAPDGGIPLVE 83
Cdd:PRK12621   4 LFESHINLVGKVMDMQLQRQNVVMSNLANVNTPGYKPRELEFEKELqaALGLDAKGKMTRTEKNHLPAVFDPEGFEPEWS 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 503674327  84 E--EPPVEGTPNNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAITEGGK 134
Cdd:PRK12621  84 KafKPRVVHGEDRVDLDKEMAKMAKNTLQYNALATVIKKNFEGLKTIIMEGQK 136
Flg_bb_rod pfam00460
Flagella basal body rod protein;
12-40 8.78e-05

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 37.55  E-value: 8.78e-05
                          10        20
                  ....*....|....*....|....*....
gi 503674327   12 QVVSEALKVRLMRHEVIAANIANVDTPGY 40
Cdd:pfam00460   2 YTAVSALNAQQIRLDVIANNIANANTPGY 30
 
Name Accession Description Interval E-value
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
4-133 2.66e-47

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 148.90  E-value: 2.66e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327   4 AKLFGKTWQVVSEALKVRLMRHEVIAANIANVDTPGYSRKDIPFEKVMAAYLKGSP---PLKTTNPRHIkPGLAPDGGIP 80
Cdd:COG1815    2 SILFDKTFGLLEKALDLRSLRQEVIASNIANADTPGYKARDVDFEAALKAALGGGSaglALATTNPRHI-PGSAGSSVSP 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 503674327  81 LVEEEPPVEGTP--NNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAITEGG 133
Cdd:COG1815   81 EVLYRTPTQPSLdgNTVDLDEEMAKLAENALQYQAALTFLNKKFSMLKTAIKGGR 135
FlgB TIGR01396
flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components ...
 7-130 2.85e-32

flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components of bacterial flagella that share a domain described by pfam00460. FlgB is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 273598 [Multi-domain]  Cd Length: 131  Bit Score: 110.56  E-value: 2.85e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327    7 FGKTWQVVSEALKVRLMRHEVIAANIANVDTPGYSRKDIPFEKVMAAYL------KGSPPLKTTNPRHIKPGLAPDGGIP 80
Cdd:TIGR01396   1 FSNAFGLLQQALDVRSLRQEVIANNIANVDTPGYKAKDVSFEAELKKALdnernsKLTLARTDTRPRHLNAQDSNSVEPS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 503674327   81 LVEEEPP-VEGTPNNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAIT 130
Cdd:TIGR01396  81 LQYDYTTqVKNDGNNVDIDQEMAELAQNQMHYQALTQFLNGKIKGLNYVLR 131
flgB PRK12621
flagellar basal body rod protein FlgB; Provisional
 6-134 3.52e-21

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 171613  Cd Length: 136  Bit Score: 82.49  E-value: 3.52e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327   6 LFGKTWQVVSEALKVRLMRHEVIAANIANVDTPGYSRKDIPFEKVM--AAYLKGSPPLKTTNPRHIKPGLAPDGGIPLVE 83
Cdd:PRK12621   4 LFESHINLVGKVMDMQLQRQNVVMSNLANVNTPGYKPRELEFEKELqaALGLDAKGKMTRTEKNHLPAVFDPEGFEPEWS 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 503674327  84 E--EPPVEGTPNNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAITEGGK 134
Cdd:PRK12621  84 KafKPRVVHGEDRVDLDKEMAKMAKNTLQYNALATVIKKNFEGLKTIIMEGQK 136
flgB PRK12623
flagellar basal body rod protein FlgB; Provisional
 10-129 3.48e-18

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183630  Cd Length: 131  Bit Score: 74.83  E-value: 3.48e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327  10 TWQVVSEALKVRLMRHEVIAANIANVDTPGYSRKDIPFEKVmaayLKGSP---PLKTTNPRHIKPGlAPDGGIPLVEEEP 86
Cdd:PRK12623  12 VYDLLKKGLDASSYRGKVISNNIANVNTKGYKRHYVTFEEN----LKNNLdnlELKTTNEKHINDG-VEFGQIKEKVDES 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 503674327  87 -PVEGTPNNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAI 129
Cdd:PRK12623  87 tSMRTDGNNVDIDNEMVNQAANTLMYNALITQLNNRLATTRYVI 130
flgB PRK06003
flagellar basal body rod protein FlgB; Reviewed
 24-106 8.55e-17

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 168340  Cd Length: 126  Bit Score: 70.81  E-value: 8.55e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327  24 RHEVIAANIANVDTPGYSRKDI-PFEKVMAaylKGSPPLKTTNPRHIKpglAPDGGIPLVE----EEPPVEGTPNNVSLE 98
Cdd:PRK06003  20 RQATVAGNIANANTPGYRARDVqPFADVLD---KTGLTMAATSPGHLG---ASATGIDVTEarpdDSWEVTHSGNSVSLE 93


                 ....*...
gi 503674327  99 QEMAKLSE 106
Cdd:PRK06003  94 QEMMKAGE 101
flgB PRK12627
FlgB family protein;
24-107 2.12e-15

FlgB family protein;


Pssm-ID: 237152 [Multi-domain]  Cd Length: 128  Bit Score: 67.45  E-value: 2.12e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327  24 RHEVIAANIANVDTPGYSRKDI-PFEKVMAAylKGSPPLKTTNPRHIKPGLAPDGGIPLVEEEPPVEGTPNNVSLEQEMA 102
Cdd:PRK12627  21 RQAVVARNVANADTPGYRARDLaDFAESYRA--EGTTGMRATRPGHLNGAAAGAADPVVTDAGGPASPNGNSVSLEEEML 98


                 ....*
gi 503674327 103 KLSEN 107
Cdd:PRK12627  99 RAVEA 103
flgB PRK12626
flagellar basal body rod protein FlgB; Provisional
 16-133 7.32e-15

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183632  Cd Length: 162  Bit Score: 66.88  E-value: 7.32e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327  16 EALKVRLMRHEVIAANIANVDTPGYSRKDIPFEKVMAAYLK----GSPP-------------------LKTTNPRHI--K 70
Cdd:PRK12626  14 QALDVRAYRQELLSSNIANADTPGYRARDVDFASTLARALKqtdgGAAAsnaaqlpmaqpagvtsgmsMASTAPGHMagN 93

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503674327  71 PGLAPDGG-----------IPLveeEPPVEGtpNNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAITEGG 133
Cdd:PRK12626  94 VKLIPTGGpsddygraqyrMPL---QPALDG--NTVDLDTERVQFADNALHYEAGMTVMTQQIKTMIAAITSNS 162
flgB PRK06004
flagellar basal body rod protein FlgB; Reviewed
 17-135 2.66e-14

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 235667  Cd Length: 127  Bit Score: 64.73  E-value: 2.66e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327  17 ALKVRLM----RHEVIAANIANVDTPGYSRKDI---PFEKVMAAYLKGSP----PLKTTNPRHIKPGLAPDGGIPlvEEE 85
Cdd:PRK06004   1 MLRTRMQwhqeRQKVLAENVANADTPGFRPRDLvepKFDASGQAQAAGAStgglGMMRTSASHMAPAGASPSFDA--RRG 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 503674327  86 PPVEGTP--NNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAItegGKR 135
Cdd:PRK06004  79 AGFETRPagNAVNLEDEMLKVSDNQMDYAAAASLYQKSLGLLKTAI---GKR 127
flgB PRK12685
flagellar basal body rod protein FlgB; Reviewed
 16-132 3.41e-14

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 183682  Cd Length: 116  Bit Score: 64.05  E-value: 3.41e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327  16 EALKVRLMRHEVIAANIANVDTPGYSRKDIPFEKVMAAYLKGSPPlkttnprhiKPGLAPDGGIPlveEEPPVEGtpNNV 95
Cdd:PRK12685  14 QTLDFRVERSKVLASNLANAETPGYKARDLDFKAVMSQINAGMVP---------NQQYEAQYRVP---YQNSADG--NTV 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 503674327  96 SLEQEMAKLSENNLMYQATIQALMKEIELLREAItEG 132
Cdd:PRK12685  80 ELGKEQARYSQNAMDYQTSLTFLNMKISGLKSAI-EG 115
flgB PRK12620
flagellar basal body rod protein FlgB; Provisional
 13-130 4.85e-13

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183628  Cd Length: 132  Bit Score: 61.57  E-value: 4.85e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327  13 VVSEALKVRLMRHEVIAANIANVDTPGYSRKDIPFEKVM--AAYLKGSPPLKTTNPRHIK---PGLAPdGGIPLVEEEPP 87
Cdd:PRK12620  11 VHGDALTLREQRMKLIASNLSNVDTPGYKAKDLNFEAALksAQGEQDGGLMQTTDAKHYEvggGGLNP-FQITRESDQPS 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 503674327  88 VEGtpNNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAIT 130
Cdd:PRK12620  90 LDG--NTVDPDAERAAYGRAALEYRASLSFLESKVRSMLTAIT 130
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 7-126 1.16e-11

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 57.89  E-value: 1.16e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327   7 FGKTWQVVSEALKVRLMRHEVIAANIANVDTPGYSRKDIPFEkVMAAYLKGSPPLKTTNPRHIKPGLAP--DGGIPLVEE 84
Cdd:PRK12632   4 FSKSLSVSASGMRAQALRLRHVSENIANADTPGYRRKTVSFQ-EARDFDPGSGLVSTGPVRLDRSELPRiyDPSHPLADE 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 503674327  85 EPPVEGTpnNVSLEQEMAKLSENNLMYQATI----------QALMkeiELLR 126
Cdd:PRK12632  83 TGYYDGS--NVDLVVEIADAREAQRSYEANLrmfdqarqmsSSLL---DLLR 129
flgB PRK07182
flagellar basal body rod protein FlgB; Reviewed
 7-129 1.37e-10

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 75964 [Multi-domain]  Cd Length: 148  Bit Score: 55.66  E-value: 1.37e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327   7 FGKTWQVVSEALKVRLMRHEVIAANIANVDTPGYSRKDIPFEK----------VMAAYLKGSPPLKTT--------NPRH 68
Cdd:PRK07182   5 FQKALGVHPMAMQLRLTRAELLSANLANVNTPNFQAKDIDFAAemqrakrgngVMAAPDRSSAQMLSTqmssaqmsSPQM 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 503674327  69 I-KPGLAPDGGIPL-VEEEPPVEGtpNNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAI 129
Cdd:PRK07182  85 MsSPQIMSSPQIKYrLPYQPSLDG--NTVALNVEQAEFSKNALDYQTSLSFLNMKLTGLKQAI 145
flgB PRK06797
flagellar basal body rod protein FlgB; Reviewed
 24-118 8.19e-10

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 180697  Cd Length: 135  Bit Score: 53.10  E-value: 8.19e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327  24 RHEVIAANIANVDTPGYSRKDIPFEKVM----------AAYLKGSPPLKTTNPRHIkPGLAPDGGIPLVEEEP-PVEGTP 92
Cdd:PRK06797  18 KRNTVSSNIANANTPGYKAQDVTFAEQMnkssalyksnAADLKSNPDLYQTNEMHL-PTVNTKNTYAKIQTKSmQTNKDG 96

                         90       100
                 ....*....|....*....|....*.
gi 503674327  93 NNVSLEQEMAKLSENNLMYQATIQAL 118
Cdd:PRK06797  97 NSVDVTTEMLDLMKANQLYGISINAI 122
flgB PRK12619
flagellar basal body rod protein FlgB; Provisional
 15-129 4.02e-09

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183627  Cd Length: 130  Bit Score: 51.32  E-value: 4.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327  15 SEALKVRLMRHEVIAANIANVDTPGYSRKDIPFEKVMAAYLKG-SPPLKTTNPRHIKPGlaPDGGIPL---VEEEPPVEG 90
Cdd:PRK12619  13 AKALIARDQRASVLANNIANVNTPNFKARDVDFNEVLTATMAGnSQQLRVTSDQHISTN--ADFMTHLkyrMTHHASLDG 90

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 503674327  91 tpNNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAI 129
Cdd:PRK12619  91 --NTVDKDMETTEFARNALNYQASLSFLNGKIKSMLTAL 127
flgB PRK12622
flagellar basal body rod protein FlgB; Provisional
 18-117 8.43e-09

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183629  Cd Length: 135  Bit Score: 50.31  E-value: 8.43e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327  18 LKVRLMRHEVIAANIANVDTPGYSRKDIPFE-KVMAAYL---KGSPPLKTTNPRHI----KPGLAPDGGIPLVEEEPPVE 89
Cdd:PRK12622  15 LDVLSLRQSVIADNIANVDTPNFKRSKVTFEsELERAILnedKNDLSLIRGNDKHLsgfkELGYLDVKPHRMLDHLSTLN 94

                         90       100       110
                 ....*....|....*....|....*....|
gi 503674327  90 GTPNNVSLEQEMAKLSENNLMYQ--ATIQA 117
Cdd:PRK12622  95 NNGNNVDIDSEMKALVQNQMMYHlfTNIQA 124
flgB PRK12624
flagellar basal body rod protein FlgB; Provisional
 1-129 4.40e-08

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 139107  Cd Length: 143  Bit Score: 48.91  E-value: 4.40e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327   1 MIGAKLFGKTWQVVSEALKVRLMRHEVIAANIANVDTPGYSRKDIPFEKVMAAYLKGSP-------PLKTTNPRHI---K 70
Cdd:PRK12624   1 MFEKTHFMKTQDLLERGMNNSIQKRKVISDNIANADVPHFKRSEVIFESMIKRAIESEKiekekevPTQISDERHIqffK 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 503674327  71 P----GLAPDGGIPLVEEEPPvEGtpNNVSLEQEMAKLSENNLMYQATIQALMKEIELLREAI 129
Cdd:PRK12624  81 PldyrEVQPKTNLDYLTTMRA-DG--NNVDVEKEVVEASNSQMQYMLMIERLNQNYRLLKQVM 140
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 13-126 3.59e-06

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 43.50  E-value: 3.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327   13 VVSEALKVRLMRHEVIAANIANVDT---PG---YSRKDIPFEKVMAAYLKGSPPLKTTNPRHIKPGLAP-----DGGIPL 81
Cdd:TIGR01395   6 VSASALSAQRVRMNVVSSNLANADStrtPAgdpYRRRRPVFEAELFQDRASRPGGSGVKVAKIVEDDSPfklvyDPTHPD 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 503674327   82 VEEEPPVEgTPNnVSLEQEMAKLSENNLMYQATIQA-------LMKEIELLR 126
Cdd:TIGR01395  86 ADAEGYVK-MPN-VNVVEEMVDMIEASRSYEANVQVfntaksmFLRTLEIGR 135
Flg_bb_rod pfam00460
Flagella basal body rod protein;
12-40 8.78e-05

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 37.55  E-value: 8.78e-05
                          10        20
                  ....*....|....*....|....*....
gi 503674327   12 QVVSEALKVRLMRHEVIAANIANVDTPGY 40
Cdd:pfam00460   2 YTAVSALNAQQIRLDVIANNIANANTPGY 30
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
23-83 2.65e-04

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 39.03  E-value: 2.65e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 503674327  23 MRHEVIAANIANVDTPGYSRKDIPFEKVMAAYLKGsPPLKTTNPRHIKPGLAPDGGIPLVE 83
Cdd:COG4786   13 TRLDVISNNLANVNTTGFKRDRAVFEDLLYQLIRR-PGAPSSQGTQTPVGLQLGTGVRVAA 72
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 26-63 3.31e-04

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 38.77  E-value: 3.31e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 503674327   26 EVIAANIANVDTPGYSRKDIPFEKVMAAYLKGSPPLKT 63
Cdd:TIGR03506  18 DVIANNIANANTTGFKRSRAEFQDLLSQSVSGSGQVGG 55
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
26-43 3.38e-04

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 39.09  E-value: 3.38e-04
                         10
                 ....*....|....*...
gi 503674327  26 EVIAANIANVDTPGYSRK 43
Cdd:COG1256   21 DVTSHNIANANTPGYSRQ 38
flgC PRK12782
flagellar basal body rod protein FlgC; Reviewed
 12-126 5.28e-04

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 139220  Cd Length: 138  Bit Score: 37.43  E-value: 5.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327  12 QVVSEALKVRLMRHEVIAANIANVD----TPG---YSRKDIPFEKVMAAYLkGSPPLKTtnpRHIKPGLAP-----DGGI 79
Cdd:PRK12782  10 RIASSGLEAQSTRLRVVSENLANAQstgrTPGadpYARKTVTFRAELDRAA-GAASVRV---KEIGVDTAPfrveyDPGN 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 503674327  80 PLVEEEPPVEgTPNnVSLEQEMAKLSENNLMYQATIQALMKE-------IELLR 126
Cdd:PRK12782  86 PAADENGYVK-LPN-VNMLIEMADMREANRSYEANLQVIKQAramvamtIDLLR 137
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 17-126 6.19e-04

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 37.11  E-value: 6.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503674327  17 ALKVRLMRHEVIAANIANVDT----PG--YSRKDIPFEKVMAAYLKGSP-----------PLKTT-NPRHikpglapdgg 78
Cdd:PRK05681  13 GLSAQSQRLNVISSNIANADStaapDGdpYRRKQVVFAAELDPGQGTGGvkvakivedqsPFKLVyDPGH---------- 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 503674327  79 iPLVEEEPPVEgTPnNVSLEQEMAKLSENNLMYQATIQAL-------MKEIELLR 126
Cdd:PRK05681  83 -PAADAKGYVK-YP-NVNVVVEMVDMISASRSYEANVEVLnaaksmmQKTLTIGQ 134
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 26-43 3.18e-03

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 36.17  E-value: 3.18e-03
                          10
                  ....*....|....*...
gi 503674327   26 EVIAANIANVDTPGYSRK 43
Cdd:TIGR02492  18 SVTSNNIANANTPGYSRQ 35
flgK PRK05683
flagellar hook-associated protein FlgK; Validated
 27-45 3.64e-03

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235558 [Multi-domain]  Cd Length: 676  Bit Score: 36.25  E-value: 3.64e-03
                         10
                 ....*....|....*....
gi 503674327  27 VIAANIANVDTPGYSRKDI 45
Cdd:PRK05683  20 VTGNNIANVDTAGYSRQQT 38
flgK PRK07521
flagellar hook-associated protein FlgK; Validated
 26-44 4.50e-03

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236038 [Multi-domain]  Cd Length: 483  Bit Score: 35.68  E-value: 4.50e-03
                         10
                 ....*....|....*....
gi 503674327  26 EVIAANIANVDTPGYSRKD 44
Cdd:PRK07521  22 SVVSRNIANAGTPGYSRRE 40
flgF PRK12690
flagellar hook-basal body complex protein;
22-61 6.46e-03

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 35.04  E-value: 6.46e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 503674327  22 LMRH-EVIAANIANVDTPGYSRKDIPFEKVMAAYLKGSPPL 61
Cdd:PRK12690  15 LMREmQVVANNIANASTTGFRREGLVFSEYVKSLDSGEASL 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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