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Conserved domains on  [gi|504229790|ref|WP_014416892|]
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LLM class flavin-dependent oxidoreductase [Bacillus amyloliquefaciens]

Protein Classification

LLM class flavin-dependent oxidoreductase( domain architecture ID 10023993)

LLM (luciferase-like monooxygenase) class flavin-dependent oxidoreductase transfers one oxygen atom of an oxygen molecule to a substrate while reducing the other oxygen atom to water

CATH:  3.20.20.30
EC:  1.-.-.-
Gene Ontology:  GO:0010181|GO:0016491
PubMed:  24361254|33460580
SCOP:  3000585

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
9-428 0e+00

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


:

Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 723.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790    9 LGVFLAGTGHHVASWRHPQAPADASMNLDYFKELAKTAERGKLDMLFLADSLSIDG-----KSHPNVLTRFEPFTLLSAL 83
Cdd:TIGR03860   1 LGAFLNGVGHHPGLWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVYDvpdaaLRRAAQLPRFEPLTLLSAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790   84 AQVTSRIGLTATASTTYSEPFHIARQFASLDHLSNGRAGWNVVTSSIESTALNFSGEKHLEHHLRYQRAEEFVEVVKGLW 163
Cdd:TIGR03860  81 AAVTEHIGLGATASTTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAARNFGLDEHPPHDERYERAEEFVDVVYKLW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  164 DSWEEDAFIRDKESGAFFDKDKMHELNHKGTYFSVRGPLNVARTPQGRPVIIQAGSSGDGKALAAKTAEVIFTAQNHLES 243
Cdd:TIGR03860 161 DSWEDDAFVRDKASGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTAQPTLED 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  244 AQEFYQSIKEQAASFGRDPEKIAIMPGIFPVIADTEEEAKAKYEELQDLIIPSVGLNILQNYLgGVDLSACPLDGPLPEL 323
Cdd:TIGR03860 241 AQAFYADIKARAAAAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGWT-GIDLSQYDLDAPLPDL 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  324 DADASNavKSRFKLVQEMAKRDNMTIRELYKYVAGSRGHHIFVGTPEQLADKMEEWVGKQACDGFNIMPPLLPEGLTLFV 403
Cdd:TIGR03860 320 PTEAGQ--KSRFDLILELARRENLTLRQLALRLAGGRGHPVFVGTPEQVADQLEEWFEEGAADGFNLMPPVLPGGLEDFV 397
                         410       420
                  ....*....|....*....|....*
gi 504229790  404 DKVIPILQERGVFRKEYEGTTLREH 428
Cdd:TIGR03860 398 DLVVPELQRRGLFRTEYEGGTLREH 422
 
Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
9-428 0e+00

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 723.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790    9 LGVFLAGTGHHVASWRHPQAPADASMNLDYFKELAKTAERGKLDMLFLADSLSIDG-----KSHPNVLTRFEPFTLLSAL 83
Cdd:TIGR03860   1 LGAFLNGVGHHPGLWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVYDvpdaaLRRAAQLPRFEPLTLLSAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790   84 AQVTSRIGLTATASTTYSEPFHIARQFASLDHLSNGRAGWNVVTSSIESTALNFSGEKHLEHHLRYQRAEEFVEVVKGLW 163
Cdd:TIGR03860  81 AAVTEHIGLGATASTTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAARNFGLDEHPPHDERYERAEEFVDVVYKLW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  164 DSWEEDAFIRDKESGAFFDKDKMHELNHKGTYFSVRGPLNVARTPQGRPVIIQAGSSGDGKALAAKTAEVIFTAQNHLES 243
Cdd:TIGR03860 161 DSWEDDAFVRDKASGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTAQPTLED 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  244 AQEFYQSIKEQAASFGRDPEKIAIMPGIFPVIADTEEEAKAKYEELQDLIIPSVGLNILQNYLgGVDLSACPLDGPLPEL 323
Cdd:TIGR03860 241 AQAFYADIKARAAAAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGWT-GIDLSQYDLDAPLPDL 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  324 DADASNavKSRFKLVQEMAKRDNMTIRELYKYVAGSRGHHIFVGTPEQLADKMEEWVGKQACDGFNIMPPLLPEGLTLFV 403
Cdd:TIGR03860 320 PTEAGQ--KSRFDLILELARRENLTLRQLALRLAGGRGHPVFVGTPEQVADQLEEWFEEGAADGFNLMPPVLPGGLEDFV 397
                         410       420
                  ....*....|....*....|....*
gi 504229790  404 DKVIPILQERGVFRKEYEGTTLREH 428
Cdd:TIGR03860 398 DLVVPELQRRGLFRTEYEGGTLREH 422
Nitrilotriacetate_monoxgenase cd01095
nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin ...
7-416 0e+00

nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2.


Pssm-ID: 238528 [Multi-domain]  Cd Length: 358  Bit Score: 518.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790   7 IKLGVFLAGTGHHVASWRHPqAPADASMNLDYFKELAKTAERGKLDMLFLADSLSIDGKSHPNVLTRFEPFTLLSALAQV 86
Cdd:cd01095    1 LHLGAFLHGAGHHAAAWRHP-APPDASIDFDHYVRLARTAERAKFDAVFLADGLAIRALSRPHPVARLEPLTLLAALAAV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  87 TSRIGLTATASTTYSEPFHIARQFASLDHLSNGRAGWNVVTSSIESTALNFSGEKHLEHHLRYQRAEEFVEVVKGLWDSW 166
Cdd:cd01095   80 TERIGLVATASTTYNEPYHLARRFASLDHISGGRAGWNVVTSANPGEARNFGRDEHPEHDERYARAEEFVEVVKGLWDSW 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 167 EEDAFIRDKESGAFFDKDKMHELNHKGTYFSVRGPLNVARTPQGRPVIIQAGSSGDGKALAAKTAEVIFTAQNHLESAQE 246
Cdd:cd01095  160 EDDALVRDKASGRFADPAKVHPLDHVGDHFGVRGPLNGPRSPQGRPVIVQAGSSEAGREFAARHAEAVFTAQQTLEEAQA 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 247 FYQSIKEQAASFGRdpekiaimpgifpviadteeeakakyeelqdliipsvglnilqnylggvdlsacpLDGPLPELDAD 326
Cdd:cd01095  240 FYADVKARAAAAGR-------------------------------------------------------LDPPPPDLPDL 264
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 327 ASNAVKSRFKL------VQEMAKRDNMTIRELYKYVAGSRGHHIFVgtPEQLADKMEEWVGKQACDGFNIMPPLLPEGLT 400
Cdd:cd01095  265 GSRLSASRLLLadllarGGLHRREVGTAREVADRLERAAGGGTVVG--PEQIADELEEWFEAGAADGFNIMPPYLPGGLD 342
                        410
                 ....*....|....*.
gi 504229790 401 LFVDKVIPILQERGVF 416
Cdd:cd01095  343 DFVDLVVPELQRRGLF 358
SsuD COG2141
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ...
46-412 1.30e-77

Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) [Coenzyme transport and metabolism, General function prediction only]; Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 441744 [Multi-domain]  Cd Length: 301  Bit Score: 243.30  E-value: 1.30e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  46 AERGKLDMLFLADSLsidgksHPNVLTRFEPFTLLSALAQVTSRIGL-TATASTTYSEPFHIARQFASLDHLSNGRAGWN 124
Cdd:COG2141    1 AERLGFDRVWVADHH------FPPGGASPDPWVLLAALAAATSRIRLgTGVVVLPLRHPLVVAEQFATLDHLSGGRLDLG 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 125 VVTSSIESTALNFSgekhLEHHLRYQRAEEFVEVVKGLWDSweedafirdkesgaffdkdkmHELNHKGTYFSVRGPLNV 204
Cdd:COG2141   75 VGRGWGPDEFAAFG----LDHDERYERFEEALEVLRRLWTG---------------------EPVTFEGEFFTVEGARLV 129
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 205 ARTPQG-RPVIIQAGSSGDGKALAAKTAEVIFTAQNHLESAQEFYQSIKEQAASFGRDPEKIAIMPGIFPVIADTEEeak 283
Cdd:COG2141  130 PRPVQGpHPPIWIAGSSPAGARLAARLGDGVFTAGGTPEELAEAIAAYREAAAAAGRDPDDLRVSVGLHVIVAETDE--- 206
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 284 akyeelqdliipsvglnilqnylggvdlsacpldgplpELDADASNAVKSRFKLVQEMAKRDNMTIRELYKYVAGsRGHH 363
Cdd:COG2141  207 --------------------------------------EARERARPYLRALLALPRGRPPEEAEEGLTVREDLLE-LLGA 247
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 504229790 364 IFVGTPEQLADKMEEWVGKQACDGFNIMPPLLP-----EGLTLFVDKVIPILQE 412
Cdd:COG2141  248 ALVGTPEQVAERLEELAEAAGVDEFLLQFPGLDpedrlRSLELFAEEVLPLLRR 301
Bac_luciferase pfam00296
Luciferase-like monooxygenase;
18-381 1.20e-54

Luciferase-like monooxygenase;


Pssm-ID: 425589 [Multi-domain]  Cd Length: 313  Bit Score: 184.10  E-value: 1.20e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790   18 HHVASWRHPQAPADASMNLDYFKELAKTAERGKLDMLFLADSLSIDGKshpnvltrFEPFTLLSALAQVTSRIGLTATAS 97
Cdd:pfam00296   4 GVFLPTRNGGGLGAGSESLRYLVELARAAEELGFDGVWLAEHHGGPGG--------PDPFVVLAALAAATSRIRLGTAVV 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790   98 TTYS-EPFHIARQFASLDHLSNGRAGWNVVTSSIESTALNFSgekhLEHHLRYQRAEEFVEVVKGLWDsweedafirdke 176
Cdd:pfam00296  76 PLPTrHPAVLAEQAATLDHLSGGRFDLGLGTGGPAVEFRRFG----VDHDERYARLREFLEVLRRLWR------------ 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  177 sgaffdkdkMHELNHKGTYFSVRGPLNVARTPQGRPVIIqAGSSGDGKALAAKTAEVIFTA-QNHLESAQEFYQSIKEQA 255
Cdd:pfam00296 140 ---------GEPVDFEGEFFTLDGAFLLPRPVQGIPVWV-AASSPAMLELAARHADGLLLWgFAPPAAAAELIERVRAGA 209
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  256 ASFGRDPEKIAIMPGIFPVIADTeeeakakYEELQDLIIPsvglnilqnYLGGVDLSACPLDGPLPELDADAsnavKSRF 335
Cdd:pfam00296 210 AEAGRDPADIRVGASLTVIVADT-------EEEARAEARA---------LIAGLPFYRMDSEGAGRLAEARE----IGEE 269
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 504229790  336 KLVQEMAKRDNMTIRELYKYVAGsrghhifVGTPEQLADKMEEWVG 381
Cdd:pfam00296 270 YDAGDWAGAADAVPDELVRAFAL-------VGTPEQVAERLAAYAE 308
PRK00719 PRK00719
alkanesulfonate monooxygenase; Provisional
35-260 1.18e-09

alkanesulfonate monooxygenase; Provisional


Pssm-ID: 234821 [Multi-domain]  Cd Length: 378  Bit Score: 59.58  E-value: 1.18e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  35 NLDYFKELAKTAergkldmlflaDSLSIDGKSHPNVLTRFEPFTLLSALAQVTSRIGLTATASTTYSEPFHIARQFASLD 114
Cdd:PRK00719  26 DHGYLQQIAQAA-----------DRLGYTGVLIPTGRSCEDAWLVAASLIPVTQRLKFLVALRPGLMSPTVAARMAATLD 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 115 HLSNGRAGWNVVTSSiESTALNFSGeKHLEHHLRYQRAEEFVEVvkglWdsweedafiRDKESGAFFDkdkmhelnHKGT 194
Cdd:PRK00719  95 RLSNGRLLINLVTGG-DPAELAGDG-LFLDHDERYEASAEFLRI----W---------RRLLEGETVD--------FEGK 151
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504229790 195 YFSVRG------PLNvartpQGRPVIIQAGSSGDGKALAAKTAEVIFTAQNHLESAQEFYQSIKEQAASFGR 260
Cdd:PRK00719 152 HIQVKGakllfpPVQ-----QPYPPLYFGGSSDAAQELAAEQVDLYLTWGEPPAQVKEKIEQVRAKAAAHGR 218
 
Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
9-428 0e+00

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 723.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790    9 LGVFLAGTGHHVASWRHPQAPADASMNLDYFKELAKTAERGKLDMLFLADSLSIDG-----KSHPNVLTRFEPFTLLSAL 83
Cdd:TIGR03860   1 LGAFLNGVGHHPGLWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVYDvpdaaLRRAAQLPRFEPLTLLSAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790   84 AQVTSRIGLTATASTTYSEPFHIARQFASLDHLSNGRAGWNVVTSSIESTALNFSGEKHLEHHLRYQRAEEFVEVVKGLW 163
Cdd:TIGR03860  81 AAVTEHIGLGATASTTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAARNFGLDEHPPHDERYERAEEFVDVVYKLW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  164 DSWEEDAFIRDKESGAFFDKDKMHELNHKGTYFSVRGPLNVARTPQGRPVIIQAGSSGDGKALAAKTAEVIFTAQNHLES 243
Cdd:TIGR03860 161 DSWEDDAFVRDKASGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTAQPTLED 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  244 AQEFYQSIKEQAASFGRDPEKIAIMPGIFPVIADTEEEAKAKYEELQDLIIPSVGLNILQNYLgGVDLSACPLDGPLPEL 323
Cdd:TIGR03860 241 AQAFYADIKARAAAAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGWT-GIDLSQYDLDAPLPDL 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  324 DADASNavKSRFKLVQEMAKRDNMTIRELYKYVAGSRGHHIFVGTPEQLADKMEEWVGKQACDGFNIMPPLLPEGLTLFV 403
Cdd:TIGR03860 320 PTEAGQ--KSRFDLILELARRENLTLRQLALRLAGGRGHPVFVGTPEQVADQLEEWFEEGAADGFNLMPPVLPGGLEDFV 397
                         410       420
                  ....*....|....*....|....*
gi 504229790  404 DKVIPILQERGVFRKEYEGTTLREH 428
Cdd:TIGR03860 398 DLVVPELQRRGLFRTEYEGGTLREH 422
Nitrilotriacetate_monoxgenase cd01095
nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin ...
7-416 0e+00

nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2.


Pssm-ID: 238528 [Multi-domain]  Cd Length: 358  Bit Score: 518.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790   7 IKLGVFLAGTGHHVASWRHPqAPADASMNLDYFKELAKTAERGKLDMLFLADSLSIDGKSHPNVLTRFEPFTLLSALAQV 86
Cdd:cd01095    1 LHLGAFLHGAGHHAAAWRHP-APPDASIDFDHYVRLARTAERAKFDAVFLADGLAIRALSRPHPVARLEPLTLLAALAAV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  87 TSRIGLTATASTTYSEPFHIARQFASLDHLSNGRAGWNVVTSSIESTALNFSGEKHLEHHLRYQRAEEFVEVVKGLWDSW 166
Cdd:cd01095   80 TERIGLVATASTTYNEPYHLARRFASLDHISGGRAGWNVVTSANPGEARNFGRDEHPEHDERYARAEEFVEVVKGLWDSW 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 167 EEDAFIRDKESGAFFDKDKMHELNHKGTYFSVRGPLNVARTPQGRPVIIQAGSSGDGKALAAKTAEVIFTAQNHLESAQE 246
Cdd:cd01095  160 EDDALVRDKASGRFADPAKVHPLDHVGDHFGVRGPLNGPRSPQGRPVIVQAGSSEAGREFAARHAEAVFTAQQTLEEAQA 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 247 FYQSIKEQAASFGRdpekiaimpgifpviadteeeakakyeelqdliipsvglnilqnylggvdlsacpLDGPLPELDAD 326
Cdd:cd01095  240 FYADVKARAAAAGR-------------------------------------------------------LDPPPPDLPDL 264
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 327 ASNAVKSRFKL------VQEMAKRDNMTIRELYKYVAGSRGHHIFVgtPEQLADKMEEWVGKQACDGFNIMPPLLPEGLT 400
Cdd:cd01095  265 GSRLSASRLLLadllarGGLHRREVGTAREVADRLERAAGGGTVVG--PEQIADELEEWFEAGAADGFNIMPPYLPGGLD 342
                        410
                 ....*....|....*.
gi 504229790 401 LFVDKVIPILQERGVF 416
Cdd:cd01095  343 DFVDLVVPELQRRGLF 358
SsuD COG2141
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ...
46-412 1.30e-77

Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) [Coenzyme transport and metabolism, General function prediction only]; Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 441744 [Multi-domain]  Cd Length: 301  Bit Score: 243.30  E-value: 1.30e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  46 AERGKLDMLFLADSLsidgksHPNVLTRFEPFTLLSALAQVTSRIGL-TATASTTYSEPFHIARQFASLDHLSNGRAGWN 124
Cdd:COG2141    1 AERLGFDRVWVADHH------FPPGGASPDPWVLLAALAAATSRIRLgTGVVVLPLRHPLVVAEQFATLDHLSGGRLDLG 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 125 VVTSSIESTALNFSgekhLEHHLRYQRAEEFVEVVKGLWDSweedafirdkesgaffdkdkmHELNHKGTYFSVRGPLNV 204
Cdd:COG2141   75 VGRGWGPDEFAAFG----LDHDERYERFEEALEVLRRLWTG---------------------EPVTFEGEFFTVEGARLV 129
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 205 ARTPQG-RPVIIQAGSSGDGKALAAKTAEVIFTAQNHLESAQEFYQSIKEQAASFGRDPEKIAIMPGIFPVIADTEEeak 283
Cdd:COG2141  130 PRPVQGpHPPIWIAGSSPAGARLAARLGDGVFTAGGTPEELAEAIAAYREAAAAAGRDPDDLRVSVGLHVIVAETDE--- 206
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 284 akyeelqdliipsvglnilqnylggvdlsacpldgplpELDADASNAVKSRFKLVQEMAKRDNMTIRELYKYVAGsRGHH 363
Cdd:COG2141  207 --------------------------------------EARERARPYLRALLALPRGRPPEEAEEGLTVREDLLE-LLGA 247
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 504229790 364 IFVGTPEQLADKMEEWVGKQACDGFNIMPPLLP-----EGLTLFVDKVIPILQE 412
Cdd:COG2141  248 ALVGTPEQVAERLEELAEAAGVDEFLLQFPGLDpedrlRSLELFAEEVLPLLRR 301
Bac_luciferase pfam00296
Luciferase-like monooxygenase;
18-381 1.20e-54

Luciferase-like monooxygenase;


Pssm-ID: 425589 [Multi-domain]  Cd Length: 313  Bit Score: 184.10  E-value: 1.20e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790   18 HHVASWRHPQAPADASMNLDYFKELAKTAERGKLDMLFLADSLSIDGKshpnvltrFEPFTLLSALAQVTSRIGLTATAS 97
Cdd:pfam00296   4 GVFLPTRNGGGLGAGSESLRYLVELARAAEELGFDGVWLAEHHGGPGG--------PDPFVVLAALAAATSRIRLGTAVV 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790   98 TTYS-EPFHIARQFASLDHLSNGRAGWNVVTSSIESTALNFSgekhLEHHLRYQRAEEFVEVVKGLWDsweedafirdke 176
Cdd:pfam00296  76 PLPTrHPAVLAEQAATLDHLSGGRFDLGLGTGGPAVEFRRFG----VDHDERYARLREFLEVLRRLWR------------ 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  177 sgaffdkdkMHELNHKGTYFSVRGPLNVARTPQGRPVIIqAGSSGDGKALAAKTAEVIFTA-QNHLESAQEFYQSIKEQA 255
Cdd:pfam00296 140 ---------GEPVDFEGEFFTLDGAFLLPRPVQGIPVWV-AASSPAMLELAARHADGLLLWgFAPPAAAAELIERVRAGA 209
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  256 ASFGRDPEKIAIMPGIFPVIADTeeeakakYEELQDLIIPsvglnilqnYLGGVDLSACPLDGPLPELDADAsnavKSRF 335
Cdd:pfam00296 210 AEAGRDPADIRVGASLTVIVADT-------EEEARAEARA---------LIAGLPFYRMDSEGAGRLAEARE----IGEE 269
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 504229790  336 KLVQEMAKRDNMTIRELYKYVAGsrghhifVGTPEQLADKMEEWVG 381
Cdd:pfam00296 270 YDAGDWAGAADAVPDELVRAFAL-------VGTPEQVAERLAAYAE 308
Alkanesulfonate_monoxygenase cd01094
Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the ...
7-278 4.94e-40

Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).


Pssm-ID: 238527 [Multi-domain]  Cd Length: 244  Bit Score: 143.57  E-value: 4.94e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790   7 IKLGVFLAGTGHhvaSWRHPQAPADASMNLDYFKELAKTAERGKLDMLFLadslsidgkshPNVLTRFEPFTLLSALAQV 86
Cdd:cd01094    1 LEFGWFIPNVSG---GWSLSTPPRGRPWDFEYNRQIAQAAEELGFDGALS-----------PTGSSGPDGWTVAAALAAA 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  87 TSRIGLTATASTTYSEPFHIARQFASLDHLSNGRAGWNVVT--SSIESTALnfsGEkHLEHHLRYQRAEEFVEVVKGLWd 164
Cdd:cd01094   67 TERLKFLVAIRPGLIAPTVAARQAATLDHISGGRLGLNVVTggDPAELRMD---GD-FLDHDERYARADEFLEVLRRLW- 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 165 sweedafirdkESGAFFDkdkmhelnHKGTYFSVR-GPLNVARTPQGRPVIIQAGSSGDGKALAAKTAEVIFTAQNHLES 243
Cdd:cd01094  142 -----------TSDEPFD--------FEGKFYRFKnAFLRPKPPQQPHPPIYFGGSSEAAIEFAARHADVYFTWGEPPAQ 202
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 504229790 244 AQEFYQSIKEQAASFGRDPeKIAIMPgiFPVIADT 278
Cdd:cd01094  203 VAEAIARVRAAAAAAGRDV-RFGIRL--HVIVRDT 234
PRK00719 PRK00719
alkanesulfonate monooxygenase; Provisional
35-260 1.18e-09

alkanesulfonate monooxygenase; Provisional


Pssm-ID: 234821 [Multi-domain]  Cd Length: 378  Bit Score: 59.58  E-value: 1.18e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  35 NLDYFKELAKTAergkldmlflaDSLSIDGKSHPNVLTRFEPFTLLSALAQVTSRIGLTATASTTYSEPFHIARQFASLD 114
Cdd:PRK00719  26 DHGYLQQIAQAA-----------DRLGYTGVLIPTGRSCEDAWLVAASLIPVTQRLKFLVALRPGLMSPTVAARMAATLD 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 115 HLSNGRAGWNVVTSSiESTALNFSGeKHLEHHLRYQRAEEFVEVvkglWdsweedafiRDKESGAFFDkdkmhelnHKGT 194
Cdd:PRK00719  95 RLSNGRLLINLVTGG-DPAELAGDG-LFLDHDERYEASAEFLRI----W---------RRLLEGETVD--------FEGK 151
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504229790 195 YFSVRG------PLNvartpQGRPVIIQAGSSGDGKALAAKTAEVIFTAQNHLESAQEFYQSIKEQAASFGR 260
Cdd:PRK00719 152 HIQVKGakllfpPVQ-----QPYPPLYFGGSSDAAQELAAEQVDLYLTWGEPPAQVKEKIEQVRAKAAAHGR 218
PRK07677 PRK07677
short chain dehydrogenase; Provisional
210-268 4.13e-05

short chain dehydrogenase; Provisional


Pssm-ID: 181077 [Multi-domain]  Cd Length: 252  Bit Score: 45.05  E-value: 4.13e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504229790 210 GRPVIIQAGSSGDGKALAAKTAE----VIFTAQNH--LESAQEFYQSIKEQAASFG---RDPEKIAIM 268
Cdd:PRK07677   1 EKVVIITGGSSGMGKAMAKRFAEeganVVITGRTKekLEEAKLEIEQFPGQVLTVQmdvRNPEDVQKM 68
Flavin_utilizing_monoxygenases cd00347
Flavin-utilizing monoxygenases
209-260 2.47e-04

Flavin-utilizing monoxygenases


Pssm-ID: 238209 [Multi-domain]  Cd Length: 90  Bit Score: 39.65  E-value: 2.47e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 504229790 209 QGRPVIIQAGSSGDGkalaaktaeVIFTAQNHLESAQEFYQSIKEQAASFGR 260
Cdd:cd00347   48 SSPPVAEQAGESGDG---------LLFAAREPPEEVAEALARYREAAAAAGR 90
PRK02271 PRK02271
methylenetetrahydromethanopterin reductase; Provisional
41-265 8.65e-04

methylenetetrahydromethanopterin reductase; Provisional


Pssm-ID: 235022 [Multi-domain]  Cd Length: 325  Bit Score: 41.08  E-value: 8.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790  41 ELAKTAERGKLDMLFLADslsidgksHPNvlTRfEPFTLLSALAQVTSRIGLTATASTTY-SEPFHIARQFASLDHLSNG 119
Cdd:PRK02271  18 YLAKLAEDNGFDYAWITD--------HYN--NR-DVYMTLAAIAAATDTIKLGPGVTNPYtRHPAITASAIATLDEISGG 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504229790 120 RAgwnvvTSSI----EST--ALNFSGEKHLehhlryQRAEEFVEVVKGLWDSweedafirdkesgaffdkdkmHELNHKG 193
Cdd:PRK02271  87 RA-----VLGIgpgdKATldALGIEWEKPL------RTVKEAIEVIRKLWAG---------------------ERVEHDG 134
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504229790 194 TYFSVRGPLNVARTPQGRPVIIqaGSSGDgKAL--AAKTAE-VIFTAQN--HLESAQEfyqSIKEQAASFGRDPEKI 265
Cdd:PRK02271 135 TFKAAGAKLNVKPVQGEIPIYM--GAQGP-KMLelAGEIADgVLINASNpkDFEWAVP---LIKKGAEEAGKSRGEF 205
Flavin_utilizing_monoxygenases cd00347
Flavin-utilizing monoxygenases
7-57 9.70e-04

Flavin-utilizing monoxygenases


Pssm-ID: 238209 [Multi-domain]  Cd Length: 90  Bit Score: 38.11  E-value: 9.70e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 504229790   7 IKLGVFLAGTGHHVASwrhpqapadASMNLDYFKELAKTAERGKLDMLFLA 57
Cdd:cd00347    1 MKFGLFLPPPGGGGAT---------AAEDLEYLVELARLAERLGFDAAWVA 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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