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Conserved domains on  [gi|504292602|ref|WP_014479704|]
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MULTISPECIES: YhcN/YlaJ family sporulation lipoprotein [Bacillus]

Protein Classification

YhcN/YlaJ family sporulation lipoprotein( domain architecture ID 11495572)

YhcN/YlaJ family sporulation lipoprotein similar to Bacillus subtilis proteins YlaJ and YhcN that contribute to the efficiency of spore germination

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
spore_YhcN_YlaJ TIGR02898
sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have ...
 3-161 5.18e-54

sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment. [Cellular processes, Sporulation and germination]


:

Pssm-ID: 131944  Cd Length: 158  Bit Score: 169.86  E-value: 5.18e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292602    3 ILFIIVQLTLILSACAYQQGKQgqnveKESTRQQET----KPIHVKDTTQETKDnGTRTDIAKHLVSVAEKNPDVKDATA 78
Cdd:TIGR02898   1 ILFIILLLLLVLTGCTNAQKKN-----PPNNNVGETnvmsKNNNGMNTTNDTND-GDLYDVADEIASEAAKVKGVKDATV 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292602   79 VVLGGYAVVGIDVDDTLDRSKVETIKYSVAQALKN-DRYGANAVVIADPDTVGRLREMSREISEGHPVTGILDELAAIVG 157
Cdd:TIGR02898  75 VITGNYAYVGVDLTNGLEGSVTDELKEKVAETVKStDNRIANVYVSADPDTVERIRRYGKGIKEGRPVEGFLDELAEIVR 154


                  ....
gi 504292602  158 RVLP 161
Cdd:TIGR02898 155 RVFP 158
 
Name Accession Description Interval E-value
spore_YhcN_YlaJ TIGR02898
sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have ...
 3-161 5.18e-54

sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment. [Cellular processes, Sporulation and germination]


Pssm-ID: 131944  Cd Length: 158  Bit Score: 169.86  E-value: 5.18e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292602    3 ILFIIVQLTLILSACAYQQGKQgqnveKESTRQQET----KPIHVKDTTQETKDnGTRTDIAKHLVSVAEKNPDVKDATA 78
Cdd:TIGR02898   1 ILFIILLLLLVLTGCTNAQKKN-----PPNNNVGETnvmsKNNNGMNTTNDTND-GDLYDVADEIASEAAKVKGVKDATV 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292602   79 VVLGGYAVVGIDVDDTLDRSKVETIKYSVAQALKN-DRYGANAVVIADPDTVGRLREMSREISEGHPVTGILDELAAIVG 157
Cdd:TIGR02898  75 VITGNYAYVGVDLTNGLEGSVTDELKEKVAETVKStDNRIANVYVSADPDTVERIRRYGKGIKEGRPVEGFLDELAEIVR 154


                  ....
gi 504292602  158 RVLP 161
Cdd:TIGR02898 155 RVFP 158
CoxA COG5912
Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, ...
 2-163 1.02e-41

Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444614  Cd Length: 181  Bit Score: 139.38  E-value: 1.02e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292602   2 RILFIIVQLTLILSACayQQGKQGQNVEKESTRQQETKPIHVKDTTQETKDN----------------GTRTDIAKHLVS 65
Cdd:COG5912    5 RLLAIALLAALALAGC--GTNNKPAPNTETNNVEPNNRPTRVKNTANNGDANtnnhlngnrdrtgdynNENQELADRIAN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292602  66 VAEKNPDVKDATAVVLGGYAVVGIDVDDTLDRSKVETIKYSVAQALK-NDRYGANAVVIADPDTVGRLREMSREISEGHP 144
Cdd:COG5912   83 RAARVPGVKDATVVVTGNNAYVGIDLKGNLDGKRTDTIKYKVAEAVKsADPRIKNVYVSADPDFVDRIRNIANDIRNGRP 162

                        170
                 ....*....|....*....
gi 504292602 145 VTGILDELAAIVGRVLPEV 163
Cdd:COG5912  163 VSGFFDELAEIVRRIFPEA 181
Spore_YhcN_YlaJ pfam09580
Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); This entry contains YhcN and YlaJ, which ...
 18-160 3.39e-13

Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.


Pssm-ID: 401497  Cd Length: 157  Bit Score: 64.64  E-value: 3.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292602   18 AYQQGKQGQNVEKESTRQQETKPIHVKDTTQETKDNGTRTDIAKHLVSVAEKNPDVKDATAVVLGGYAVVGIDVDDTLDR 97
Cdd:pfam09580  16 GYNDNNNPSRTDDNGYVRYQKHPVSGQNTTNNGYPNANRGELADKITSRVLRLPGVEDAAVLVTGNTALVAVDTDNNGSD 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504292602   98 SkvETIKYSVAQALKN-DRYGANAVVIADPDTVGRLREMSREISEGHPVTGILDELAAIVGRVL 160
Cdd:pfam09580  96 R--DELKDQVKKAVKSvDPRIYNVYVSTDPDLFDRIRNFADRLQNGRPVEGFGQEIKEMIERMF 157
 
Name Accession Description Interval E-value
spore_YhcN_YlaJ TIGR02898
sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have ...
 3-161 5.18e-54

sporulation lipoprotein, YhcN/YlaJ family; YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment. [Cellular processes, Sporulation and germination]


Pssm-ID: 131944  Cd Length: 158  Bit Score: 169.86  E-value: 5.18e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292602    3 ILFIIVQLTLILSACAYQQGKQgqnveKESTRQQET----KPIHVKDTTQETKDnGTRTDIAKHLVSVAEKNPDVKDATA 78
Cdd:TIGR02898   1 ILFIILLLLLVLTGCTNAQKKN-----PPNNNVGETnvmsKNNNGMNTTNDTND-GDLYDVADEIASEAAKVKGVKDATV 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292602   79 VVLGGYAVVGIDVDDTLDRSKVETIKYSVAQALKN-DRYGANAVVIADPDTVGRLREMSREISEGHPVTGILDELAAIVG 157
Cdd:TIGR02898  75 VITGNYAYVGVDLTNGLEGSVTDELKEKVAETVKStDNRIANVYVSADPDTVERIRRYGKGIKEGRPVEGFLDELAEIVR 154


                  ....
gi 504292602  158 RVLP 161
Cdd:TIGR02898 155 RVFP 158
CoxA COG5912
Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, ...
 2-163 1.02e-41

Spore cortex protein CoxA (YrbB), YhcN/YlaJ family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444614  Cd Length: 181  Bit Score: 139.38  E-value: 1.02e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292602   2 RILFIIVQLTLILSACayQQGKQGQNVEKESTRQQETKPIHVKDTTQETKDN----------------GTRTDIAKHLVS 65
Cdd:COG5912    5 RLLAIALLAALALAGC--GTNNKPAPNTETNNVEPNNRPTRVKNTANNGDANtnnhlngnrdrtgdynNENQELADRIAN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292602  66 VAEKNPDVKDATAVVLGGYAVVGIDVDDTLDRSKVETIKYSVAQALK-NDRYGANAVVIADPDTVGRLREMSREISEGHP 144
Cdd:COG5912   83 RAARVPGVKDATVVVTGNNAYVGIDLKGNLDGKRTDTIKYKVAEAVKsADPRIKNVYVSADPDFVDRIRNIANDIRNGRP 162

                        170
                 ....*....|....*....
gi 504292602 145 VTGILDELAAIVGRVLPEV 163
Cdd:COG5912  163 VSGFFDELAEIVRRIFPEA 181
Spore_YhcN_YlaJ pfam09580
Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); This entry contains YhcN and YlaJ, which ...
 18-160 3.39e-13

Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.


Pssm-ID: 401497  Cd Length: 157  Bit Score: 64.64  E-value: 3.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504292602   18 AYQQGKQGQNVEKESTRQQETKPIHVKDTTQETKDNGTRTDIAKHLVSVAEKNPDVKDATAVVLGGYAVVGIDVDDTLDR 97
Cdd:pfam09580  16 GYNDNNNPSRTDDNGYVRYQKHPVSGQNTTNNGYPNANRGELADKITSRVLRLPGVEDAAVLVTGNTALVAVDTDNNGSD 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504292602   98 SkvETIKYSVAQALKN-DRYGANAVVIADPDTVGRLREMSREISEGHPVTGILDELAAIVGRVL 160
Cdd:pfam09580  96 R--DELKDQVKKAVKSvDPRIYNVYVSTDPDLFDRIRNFADRLQNGRPVEGFGQEIKEMIERMF 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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